Experiment set12S330 for Pantoea sp. MT58

Compare to:

TNT nitrogen source

200 most important genes:

  gene name fitness t score description  
IAI47_08705 -3.9 -25.0 carboxy terminal-processing peptidase compare
IAI47_15970 -3.8 -2.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_00300 -3.5 -2.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_04190 -3.5 -4.7 adenylyl-sulfate kinase compare
IAI47_13685 -3.0 -3.7 Tol-Pal system protein TolB compare
IAI47_06965 -2.9 -4.4 glycosyltransferase family 2 protein compare
IAI47_05155 -2.9 -19.3 polyphosphate kinase 1 compare
IAI47_16120 -2.8 -9.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_08435 -2.8 -1.9 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_18045 -2.8 -12.4 phosphoribosylamine--glycine ligase compare
IAI47_13690 -2.7 -0.9 cell envelope integrity protein TolA compare
IAI47_16860 -2.7 -10.7 aspartate carbamoyltransferase compare
IAI47_17000 -2.6 -14.9 lipoprotein NlpI compare
IAI47_13900 -2.6 -16.6 asparagine synthase B compare
IAI47_06980 -2.6 -3.5 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_12705 -2.5 -9.9 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_17185 -2.5 -8.6 RNA polymerase factor sigma-54 compare
IAI47_09235 -2.5 -1.6 type I DNA topoisomerase compare
IAI47_16350 -2.5 -10.3 phosphoserine phosphatase compare
IAI47_07020 -2.5 -3.1 hypothetical protein compare
IAI47_09275 -2.4 -8.8 orotidine-5'-phosphate decarboxylase compare
IAI47_16115 -2.4 -14.4 carbamoyl-phosphate synthase large subunit compare
IAI47_05180 -2.4 -13.7 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_12215 -2.3 -9.5 dihydroorotase compare
IAI47_06235 -2.3 -10.1 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_04930 -2.2 -15.6 phosphoribosylformylglycinamidine synthase compare
IAI47_12865 -2.2 -8.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_18040 -2.2 -14.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_06055 -2.1 -2.1 tRNA-Arg compare
IAI47_14350 -2.1 -7.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_11930 -2.1 -3.4 two-component system response regulator PhoP compare
IAI47_03725 -2.1 -9.0 phosphoglycerate dehydrogenase compare
IAI47_17005 -2.0 -10.2 polyribonucleotide nucleotidyltransferase compare
IAI47_08410 -2.0 -3.9 carboxy-S-adenosyl-L-methionine synthase CmoA compare
IAI47_04605 -2.0 -6.8 magnesium-translocating P-type ATPase compare
IAI47_17965 -1.9 -15.5 glucose-6-phosphate isomerase compare
IAI47_06275 -1.9 -13.2 amidophosphoribosyltransferase compare
IAI47_13155 -1.9 -2.9 H-NS histone family protein compare
IAI47_14355 -1.9 -8.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_11475 -1.9 -2.1 hypothetical protein compare
IAI47_05275 -1.9 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_17900 -1.8 -2.1 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_00755 -1.8 -9.8 envelope stress sensor histidine kinase CpxA compare
IAI47_02585 -1.7 -2.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_02750 -1.7 -12.9 class 1 fructose-bisphosphatase compare
IAI47_08405 -1.7 -5.4 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
IAI47_04895 -1.7 -4.3 pyridoxine 5'-phosphate synthase compare
IAI47_06355 -1.7 -9.7 transcriptional regulator LrhA compare
IAI47_18840 -1.6 -3.0 membrane protein insertion efficiency factor YidD compare
IAI47_08440 -1.6 -2.5 crossover junction endodeoxyribonuclease RuvC compare
IAI47_12175 -1.6 -5.0 anti-sigma-28 factor FlgM compare
IAI47_16080 -1.6 -8.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_06475 -1.5 -6.2 transcriptional regulator RcsB compare
IAI47_14515 -1.5 -13.3 multidrug efflux RND transporter permease subunit compare
IAI47_07000 -1.5 -8.6 UDP-glucose 4-epimerase GalE compare
IAI47_07965 -1.5 -5.7 transcriptional regulator RcsA compare
IAI47_02465 -1.5 -12.1 metalloprotease TldD compare
IAI47_00930 -1.4 -9.4 DNA-binding transcriptional regulator OxyR compare
IAI47_00515 -1.4 -2.4 DNA-directed RNA polymerase subunit omega compare
IAI47_06630 -1.4 -7.6 phosphatase PAP2 family protein compare
IAI47_14545 -1.4 -5.2 hypothetical protein compare
IAI47_14510 -1.4 -10.6 efflux RND transporter periplasmic adaptor subunit conserved
IAI47_21635 -1.4 -7.4 hypothetical protein compare
IAI47_06925 -1.4 -7.7 undecaprenyl-phosphate galactose phosphotransferase WbaP compare
IAI47_01325 -1.4 -10.1 glutathione-disulfide reductase compare
IAI47_00600 -1.4 -5.3 orotate phosphoribosyltransferase compare
IAI47_02765 -1.3 -9.6 metalloprotease PmbA compare
IAI47_05525 -1.3 -2.4 tRNA-Ala compare
IAI47_17970 -1.3 -5.6 hypothetical protein compare
IAI47_17255 -1.3 -2.2 DUF1043 family protein compare
IAI47_01750 -1.3 -4.5 glycerol-3-phosphate dehydrogenase compare
IAI47_18250 -1.3 -5.6 transcription/translation regulatory transformer protein RfaH compare
IAI47_16795 -1.3 -6.4 leucyl aminopeptidase compare
IAI47_13065 -1.2 -2.9 DUF1418 family protein compare
IAI47_00780 -1.2 -4.2 6-phosphofructokinase compare
IAI47_07350 -1.2 -1.2 hypothetical protein compare
IAI47_11200 -1.2 -3.7 DotU family type IV/VI secretion system protein compare
IAI47_14730 -1.2 -1.6 exodeoxyribonuclease VII small subunit compare
IAI47_18830 -1.2 -0.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_16095 -1.2 -4.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_18215 -1.2 -1.7 Trk system potassium transporter TrkH compare
IAI47_13840 -1.2 -3.1 replication initiation negative regulator SeqA compare
IAI47_21690 -1.2 -8.6 TetR/AcrR family transcriptional regulator compare
IAI47_06900 -1.2 -2.2 phosphatase PAP2 family protein compare
IAI47_01820 -1.2 -5.9 two-component system response regulator OmpR compare
IAI47_00660 -1.2 -9.2 putative lipopolysaccharide heptosyltransferase III compare
IAI47_21880 -1.2 -1.0 ParA family protein compare
IAI47_11205 -1.2 -7.1 type VI secretion system membrane subunit TssM compare
IAI47_13695 -1.2 -0.6 colicin uptake protein TolR compare
IAI47_12110 -1.2 -2.3 ribonuclease E compare
IAI47_13950 -1.2 -1.9 PhoH family protein compare
IAI47_06565 -1.1 -2.1 YejL family protein compare
IAI47_04450 -1.1 -1.9 tRNA-Ala compare
IAI47_21655 -1.1 -1.2 LacI family DNA-binding transcriptional regulator compare
IAI47_12645 -1.1 -4.0 porin OmpA compare
IAI47_20600 -1.1 -2.3 hypothetical protein compare
IAI47_07550 -1.1 -1.7 tRNA-Asn compare
IAI47_15115 -1.1 -6.6 glutamate-5-semialdehyde dehydrogenase compare
IAI47_17975 -1.1 -4.3 YjbF family lipoprotein compare
IAI47_11935 -1.1 -5.0 two-component system sensor histidine kinase PhoQ compare
IAI47_07010 -1.0 -2.4 ABC transporter permease compare
IAI47_09165 -1.0 -6.3 tryptophan synthase subunit alpha compare
IAI47_12570 -1.0 -1.2 tRNA-Ser compare
IAI47_14680 -1.0 -4.1 cytochrome o ubiquinol oxidase subunit II compare
IAI47_00920 -1.0 -7.4 argininosuccinate lyase compare
IAI47_15120 -1.0 -4.4 glutamate 5-kinase compare
IAI47_11375 -1.0 -1.8 hypothetical protein compare
IAI47_01780 -1.0 -1.4 Fe-S biogenesis protein NfuA compare
IAI47_09720 -1.0 -5.8 TetR/AcrR family transcriptional regulator compare
IAI47_01120 -1.0 -6.4 manganese efflux pump MntP compare
IAI47_17235 -1.0 -6.8 stringent starvation protein A compare
IAI47_13570 -1.0 -2.2 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_06245 -1.0 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_18505 -1.0 -4.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI47_12945 -1.0 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_17120 -1.0 -2.5 BolA family iron metabolism protein IbaG compare
IAI47_09175 -0.9 -6.5 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_04185 -0.9 -7.2 sulfate adenylyltransferase subunit CysN compare
IAI47_00450 -0.9 -6.3 nitrogen regulation protein NR(I) compare
IAI47_15540 -0.9 -6.7 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_13795 -0.9 -4.1 5-oxoprolinase subunit PxpA compare
IAI47_12915 -0.9 -5.3 leucine-responsive transcriptional regulator Lrp compare
IAI47_04160 -0.9 -2.0 phosphoadenylyl-sulfate reductase compare
IAI47_15305 -0.9 -2.8 allantoin racemase compare
IAI47_10925 -0.9 -2.4 EAL domain-containing protein compare
IAI47_18510 -0.9 -5.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI47_17985 -0.9 -8.1 YjbH domain-containing protein compare
IAI47_13545 -0.9 -5.7 6-phosphogluconolactonase compare
IAI47_16090 -0.9 -5.0 Co2+/Mg2+ efflux protein ApaG compare
IAI47_06370 -0.9 -4.4 NADH-quinone oxidoreductase subunit C/D compare
IAI47_17225 -0.9 -6.9 sulfite reductase subunit alpha compare
IAI47_11575 -0.9 -5.9 protein kinase compare
IAI47_12935 -0.9 -4.9 leucyl/phenylalanyl-tRNA--protein transferase compare
IAI47_00455 -0.8 -5.2 nitrogen regulation protein NR(II) compare
IAI47_06405 -0.8 -2.8 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_17220 -0.8 -7.5 glutamate synthase large subunit compare
IAI47_05510 -0.8 -6.1 putative DNA-binding transcriptional regulator compare
IAI47_00655 -0.8 -1.4 glycosyltransferase family 4 protein compare
IAI47_11760 -0.8 -0.7 TonB-dependent siderophore receptor compare
IAI47_09170 -0.8 -5.8 tryptophan synthase subunit beta compare
IAI47_06115 -0.8 -6.7 long-chain fatty acid transporter FadL compare
IAI47_18530 -0.8 -1.6 thioredoxin TrxA compare
IAI47_06390 -0.8 -2.6 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_16085 -0.8 -0.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_02350 -0.8 -0.9 tRNA-Thr compare
IAI47_13415 -0.8 -5.9 L,D-transpeptidase family protein compare
IAI47_04150 -0.8 -5.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_09010 -0.8 -4.7 formyltetrahydrofolate deformylase compare
IAI47_11975 -0.8 -6.8 transcription-repair coupling factor compare
IAI47_03820 -0.8 -2.3 site-specific tyrosine recombinase XerD compare
IAI47_14945 -0.8 -1.7 pyrroline-5-carboxylate reductase compare
IAI47_19675 -0.8 -2.6 ParD-like family protein compare
IAI47_08700 -0.8 -3.7 RNA chaperone ProQ compare
IAI47_15485 -0.8 -1.0 molecular chaperone Skp compare
IAI47_04835 -0.8 -4.9 ATP-dependent RNA helicase SrmB compare
IAI47_11700 -0.8 -4.5 SH3 domain-containing protein compare
IAI47_18400 -0.8 -1.6 tyrosine recombinase XerC compare
IAI47_06330 -0.8 -5.2 DUF412 domain-containing protein compare
IAI47_03750 -0.8 -5.2 Xaa-Pro aminopeptidase compare
IAI47_17785 -0.8 -5.6 oligosaccharide flippase family protein compare
IAI47_00915 -0.8 -6.0 argininosuccinate synthase compare
IAI47_18485 -0.8 -6.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_01995 -0.8 -5.6 LacI family DNA-binding transcriptional regulator compare
IAI47_18055 -0.8 -3.9 DNA-binding protein HU-alpha compare
IAI47_13770 -0.8 -5.7 citrate synthase compare
IAI47_09190 -0.8 -5.5 anthranilate synthase component 1 compare
IAI47_14835 -0.8 -5.5 branched-chain amino acid transporter carrier protein BrnQ compare
IAI47_15110 -0.7 -3.0 chromophore lyase compare
IAI47_17980 -0.7 -4.3 capsule biosynthesis GfcC family protein compare
IAI47_08905 -0.7 -5.8 undecaprenyl-phosphate galactose phosphotransferase WbaP compare
IAI47_12950 -0.7 -5.6 ATP-dependent Clp protease adapter ClpS compare
IAI47_17215 -0.7 -0.9 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_07165 -0.7 -0.5 exodeoxyribonuclease I compare
IAI47_17130 -0.7 -5.7 phospholipid-binding protein MlaC compare
IAI47_11625 -0.7 -1.9 DUF1311 domain-containing protein compare
IAI47_04800 -0.7 -0.8 RnfH family protein compare
IAI47_11195 -0.7 -3.3 SH3 domain-containing protein compare
IAI47_03645 -0.7 -6.2 O-antigen ligase family protein compare
IAI47_18495 -0.7 -4.0 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_03920 -0.7 -5.4 phosphoenolpyruvate--protein phosphotransferase compare
IAI47_18475 -0.7 -4.9 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_04175 -0.7 -4.6 uroporphyrinogen-III C-methyltransferase compare
IAI47_00770 -0.7 -0.7 general stress protein compare
IAI47_07065 -0.7 -4.3 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_12760 -0.7 -4.7 porin OmpF compare
IAI47_18465 -0.7 -4.8 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
IAI47_00900 -0.7 -4.6 acetylornithine deacetylase compare
IAI47_02875 -0.7 -3.8 phage holin family protein compare
IAI47_01345 -0.7 -5.3 oligopeptidase A compare
IAI47_17145 -0.7 -5.1 phospholipid ABC transporter ATP-binding protein MlaF compare
IAI47_11480 -0.7 -1.0 hypothetical protein compare
IAI47_07570 -0.7 -4.3 nitrogen assimilation transcriptional regulator NAC compare
IAI47_04805 -0.7 -2.7 outer membrane protein assembly factor BamE compare
IAI47_13180 -0.7 -3.3 manganese-binding transcriptional regulator MntR compare
IAI47_17385 -0.7 -1.8 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_04010 -0.7 -3.0 cysteine desulfurase sulfur acceptor subunit CsdE compare
IAI47_04300 -0.7 -3.0 recombinase RecA compare
IAI47_13030 -0.7 -3.8 putrescine ABC transporter permease PotI compare
IAI47_15995 -0.7 -1.8 leu operon leader peptide compare
IAI47_19690 -0.7 -1.1 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source Trinitrotoluene in Pantoea sp. MT58

For nitrogen source Trinitrotoluene across organisms