Experiment set12S327 for Pantoea sp. MT58

Compare to:

TNT nitrogen source

200 most important genes:

  gene name fitness t score description  
IAI47_08705 -4.5 -25.7 carboxy terminal-processing peptidase compare
IAI47_00300 -3.5 -2.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_03725 -3.3 -10.2 phosphoglycerate dehydrogenase compare
IAI47_07020 -3.3 -2.7 hypothetical protein compare
IAI47_16350 -3.3 -12.9 phosphoserine phosphatase compare
IAI47_17185 -3.2 -7.4 RNA polymerase factor sigma-54 compare
IAI47_13685 -3.2 -2.1 Tol-Pal system protein TolB compare
IAI47_17000 -3.1 -17.0 lipoprotein NlpI compare
IAI47_12865 -3.0 -7.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_06980 -3.0 -4.0 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_16860 -2.9 -10.1 aspartate carbamoyltransferase compare
IAI47_13900 -2.9 -18.0 asparagine synthase B compare
IAI47_16120 -2.8 -9.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_05155 -2.8 -19.8 polyphosphate kinase 1 compare
IAI47_16115 -2.8 -14.9 carbamoyl-phosphate synthase large subunit compare
IAI47_08435 -2.8 -1.9 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_09275 -2.7 -8.0 orotidine-5'-phosphate decarboxylase compare
IAI47_04190 -2.6 -6.4 adenylyl-sulfate kinase compare
IAI47_12705 -2.6 -10.2 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_04605 -2.5 -7.0 magnesium-translocating P-type ATPase compare
IAI47_11930 -2.5 -2.9 two-component system response regulator PhoP compare
IAI47_00755 -2.4 -13.1 envelope stress sensor histidine kinase CpxA compare
IAI47_12215 -2.4 -9.9 dihydroorotase compare
IAI47_18045 -2.4 -13.3 phosphoribosylamine--glycine ligase compare
IAI47_05180 -2.4 -13.5 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_14355 -2.3 -10.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_17900 -2.3 -2.4 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_05275 -2.3 -4.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_04930 -2.2 -15.9 phosphoribosylformylglycinamidine synthase compare
IAI47_18040 -2.2 -14.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_14350 -2.2 -7.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_13155 -2.1 -2.7 H-NS histone family protein compare
IAI47_06275 -2.1 -14.8 amidophosphoribosyltransferase compare
IAI47_06965 -2.1 -2.4 glycosyltransferase family 2 protein compare
IAI47_08410 -2.0 -2.4 carboxy-S-adenosyl-L-methionine synthase CmoA compare
IAI47_07000 -2.0 -13.7 UDP-glucose 4-epimerase GalE compare
IAI47_15635 -2.0 -2.6 RNA polymerase-binding protein DksA compare
IAI47_06900 -2.0 -5.3 phosphatase PAP2 family protein compare
IAI47_17965 -2.0 -15.5 glucose-6-phosphate isomerase compare
IAI47_00600 -1.9 -5.4 orotate phosphoribosyltransferase compare
IAI47_17005 -1.9 -9.1 polyribonucleotide nucleotidyltransferase compare
IAI47_02750 -1.8 -14.3 class 1 fructose-bisphosphatase compare
IAI47_06235 -1.8 -8.2 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_08405 -1.8 -5.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
IAI47_11935 -1.8 -6.9 two-component system sensor histidine kinase PhoQ compare
IAI47_18840 -1.7 -3.8 membrane protein insertion efficiency factor YidD compare
IAI47_04895 -1.7 -3.6 pyridoxine 5'-phosphate synthase compare
IAI47_06055 -1.7 -2.3 tRNA-Arg compare
IAI47_06475 -1.7 -5.5 transcriptional regulator RcsB compare
IAI47_00930 -1.7 -11.3 DNA-binding transcriptional regulator OxyR compare
IAI47_00770 -1.7 -1.3 general stress protein compare
IAI47_02765 -1.6 -12.3 metalloprotease PmbA compare
IAI47_06925 -1.6 -9.0 undecaprenyl-phosphate galactose phosphotransferase WbaP compare
IAI47_02465 -1.6 -12.9 metalloprotease TldD compare
IAI47_06355 -1.6 -8.2 transcriptional regulator LrhA compare
IAI47_13065 -1.6 -3.3 DUF1418 family protein compare
IAI47_13690 -1.6 -0.7 cell envelope integrity protein TolA compare
IAI47_07965 -1.6 -6.8 transcriptional regulator RcsA compare
IAI47_18400 -1.5 -3.5 tyrosine recombinase XerC compare
IAI47_14515 -1.5 -13.2 multidrug efflux RND transporter permease subunit compare
IAI47_01325 -1.5 -10.6 glutathione-disulfide reductase compare
IAI47_16080 -1.4 -6.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_12175 -1.4 -4.9 anti-sigma-28 factor FlgM compare
IAI47_02585 -1.4 -2.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_12915 -1.4 -7.6 leucine-responsive transcriptional regulator Lrp compare
IAI47_17235 -1.4 -9.8 stringent starvation protein A compare
IAI47_17975 -1.3 -5.1 YjbF family lipoprotein compare
IAI47_13570 -1.3 -2.0 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_11205 -1.3 -7.1 type VI secretion system membrane subunit TssM compare
IAI47_18250 -1.3 -4.9 transcription/translation regulatory transformer protein RfaH compare
IAI47_15485 -1.3 -1.4 molecular chaperone Skp compare
IAI47_00660 -1.3 -9.0 putative lipopolysaccharide heptosyltransferase III compare
IAI47_14510 -1.3 -9.9 efflux RND transporter periplasmic adaptor subunit compare
IAI47_17985 -1.3 -11.2 YjbH domain-containing protein compare
IAI47_12110 -1.3 -2.9 ribonuclease E compare
IAI47_08440 -1.2 -2.0 crossover junction endodeoxyribonuclease RuvC compare
IAI47_00455 -1.2 -7.4 nitrogen regulation protein NR(II) compare
IAI47_18830 -1.2 -0.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_01120 -1.2 -6.6 manganese efflux pump MntP compare
IAI47_06630 -1.2 -7.3 phosphatase PAP2 family protein compare
IAI47_12945 -1.2 -8.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_06395 -1.2 -1.4 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_15110 -1.2 -5.2 chromophore lyase compare
IAI47_09165 -1.2 -7.5 tryptophan synthase subunit alpha compare
IAI47_15540 -1.2 -8.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_12935 -1.2 -6.3 leucyl/phenylalanyl-tRNA--protein transferase compare
IAI47_14695 -1.2 -3.2 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_15995 -1.2 -2.2 leu operon leader peptide compare
IAI47_09185 -1.2 -3.2 glutamine amidotransferase compare
IAI47_09235 -1.2 -0.9 type I DNA topoisomerase compare
IAI47_16795 -1.2 -6.7 leucyl aminopeptidase compare
IAI47_13545 -1.1 -7.7 6-phosphogluconolactonase compare
IAI47_21635 -1.1 -6.1 hypothetical protein compare
IAI47_00450 -1.1 -7.6 nitrogen regulation protein NR(I) compare
IAI47_08445 -1.1 -1.2 Holliday junction branch migration protein RuvA compare
IAI47_08700 -1.1 -5.1 RNA chaperone ProQ compare
IAI47_18465 -1.1 -7.1 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
IAI47_13415 -1.1 -8.6 L,D-transpeptidase family protein compare
IAI47_04120 -1.1 -8.8 GTP diphosphokinase compare
IAI47_13795 -1.1 -4.6 5-oxoprolinase subunit PxpA compare
IAI47_00920 -1.1 -7.9 argininosuccinate lyase compare
IAI47_13180 -1.1 -5.5 manganese-binding transcriptional regulator MntR compare
IAI47_21690 -1.1 -7.1 TetR/AcrR family transcriptional regulator compare
IAI47_17970 -1.1 -4.5 hypothetical protein compare
IAI47_13840 -1.1 -2.7 replication initiation negative regulator SeqA compare
IAI47_18505 -1.0 -6.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI47_04800 -1.0 -1.0 RnfH family protein compare
IAI47_17980 -1.0 -5.6 capsule biosynthesis GfcC family protein compare
IAI47_15115 -1.0 -6.2 glutamate-5-semialdehyde dehydrogenase compare
IAI47_01820 -1.0 -5.2 two-component system response regulator OmpR compare
IAI47_12950 -1.0 -7.3 ATP-dependent Clp protease adapter ClpS compare
IAI47_18510 -1.0 -6.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI47_18055 -1.0 -4.1 DNA-binding protein HU-alpha compare
IAI47_11575 -1.0 -6.7 protein kinase compare
IAI47_17215 -1.0 -1.1 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_11310 -1.0 -2.7 redox-regulated ATPase YchF compare
IAI47_06750 -1.0 -6.9 outer membrane permeability protein SanA compare
IAI47_11975 -1.0 -7.7 transcription-repair coupling factor compare
IAI47_20680 -0.9 -3.8 hypothetical protein compare
IAI47_09175 -0.9 -5.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_00760 -0.9 -1.8 envelope stress response regulator transcription factor CpxR compare
IAI47_01750 -0.9 -4.3 glycerol-3-phosphate dehydrogenase compare
IAI47_14690 -0.9 -3.5 cytochrome o ubiquinol oxidase subunit III compare
IAI47_11200 -0.9 -2.9 DotU family type IV/VI secretion system protein compare
IAI47_16095 -0.9 -3.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_15600 -0.9 -1.0 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_11605 -0.9 -3.9 hypothetical protein compare
IAI47_14545 -0.9 -3.3 hypothetical protein compare
IAI47_12375 -0.9 -1.5 acyl carrier protein compare
IAI47_04160 -0.9 -2.2 phosphoadenylyl-sulfate reductase compare
IAI47_03820 -0.9 -3.5 site-specific tyrosine recombinase XerD compare
IAI47_00905 -0.9 -6.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_01345 -0.9 -6.9 oligopeptidase A compare
IAI47_04740 -0.9 -2.6 hypothetical protein compare
IAI47_16995 -0.9 -1.9 protein YrbN compare
IAI47_11630 -0.9 -2.3 hypothetical protein compare
IAI47_15120 -0.9 -3.8 glutamate 5-kinase compare
IAI47_17220 -0.9 -7.9 glutamate synthase large subunit compare
IAI47_00875 -0.9 -0.7 met regulon transcriptional regulator MetJ compare
IAI47_12410 -0.9 -3.7 MarR family transcriptional regulator compare
IAI47_10845 -0.9 -3.7 major outer membrane lipoprotein compare
IAI47_17225 -0.9 -6.8 sulfite reductase subunit alpha compare
IAI47_09720 -0.9 -5.2 TetR/AcrR family transcriptional regulator compare
IAI47_09010 -0.9 -4.8 formyltetrahydrofolate deformylase compare
IAI47_06245 -0.9 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_18490 -0.9 -3.3 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_17130 -0.9 -6.7 phospholipid-binding protein MlaC compare
IAI47_16090 -0.8 -4.9 Co2+/Mg2+ efflux protein ApaG compare
IAI47_01995 -0.8 -5.9 LacI family DNA-binding transcriptional regulator compare
IAI47_09170 -0.8 -6.0 tryptophan synthase subunit beta compare
IAI47_20600 -0.8 -1.7 hypothetical protein compare
IAI47_06330 -0.8 -4.9 DUF412 domain-containing protein compare
IAI47_08430 -0.8 -2.0 dihydroneopterin triphosphate diphosphatase compare
IAI47_10520 -0.8 -1.7 pyridoxamine 5'-phosphate oxidase compare
IAI47_13950 -0.8 -1.3 PhoH family protein compare
IAI47_18485 -0.8 -6.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_06370 -0.8 -4.2 NADH-quinone oxidoreductase subunit C/D compare
IAI47_17125 -0.8 -5.0 lipid asymmetry maintenance protein MlaB compare
IAI47_16085 -0.8 -0.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_11700 -0.8 -3.7 SH3 domain-containing protein compare
IAI47_04185 -0.8 -6.0 sulfate adenylyltransferase subunit CysN compare
IAI47_09180 -0.8 -5.5 anthranilate phosphoribosyltransferase compare
IAI47_06115 -0.8 -6.6 long-chain fatty acid transporter FadL compare
IAI47_03150 -0.8 -5.7 3',5'-cyclic-AMP phosphodiesterase compare
IAI47_14805 -0.8 -3.9 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_08905 -0.8 -6.3 undecaprenyl-phosphate galactose phosphotransferase WbaP compare
IAI47_07360 -0.8 -1.5 hypothetical protein compare
IAI47_17135 -0.8 -4.1 outer membrane lipid asymmetry maintenance protein MlaD compare
IAI47_03750 -0.8 -5.2 Xaa-Pro aminopeptidase compare
IAI47_05090 -0.8 -3.1 hypothetical protein compare
IAI47_07350 -0.8 -0.8 hypothetical protein compare
IAI47_04150 -0.8 -4.8 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_18475 -0.8 -5.1 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_17140 -0.8 -5.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
IAI47_04155 -0.7 -4.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_03920 -0.7 -5.6 phosphoenolpyruvate--protein phosphotransferase compare
IAI47_13770 -0.7 -5.1 citrate synthase compare
IAI47_00465 -0.7 -3.7 ribosome-dependent GTPase TypA compare
IAI47_04805 -0.7 -2.3 outer membrane protein assembly factor BamE compare
IAI47_00915 -0.7 -5.6 argininosuccinate synthase compare
IAI47_17785 -0.7 -5.2 oligosaccharide flippase family protein compare
IAI47_15970 -0.7 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_16830 -0.7 -5.4 ornithine carbamoyltransferase compare
IAI47_11600 -0.7 -2.6 protein of avirulence locus ImpE compare
IAI47_15025 -0.7 -1.4 transcriptional regulator LldR compare
IAI47_04835 -0.7 -4.2 ATP-dependent RNA helicase SrmB compare
IAI47_06405 -0.7 -2.9 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_05510 -0.7 -5.4 putative DNA-binding transcriptional regulator compare
IAI47_07165 -0.7 -0.5 exodeoxyribonuclease I compare
IAI47_11635 -0.7 -3.2 hypothetical protein compare
IAI47_09190 -0.7 -5.0 anthranilate synthase component 1 compare
IAI47_00725 -0.7 -3.5 rhodanese-like domain-containing protein compare
IAI47_12470 -0.7 -5.8 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_04775 -0.7 -1.2 SIR2 family protein compare
IAI47_19660 -0.7 -3.2 hypothetical protein compare
IAI47_09265 -0.7 -2.2 LapA family protein compare
IAI47_21490 -0.7 -3.9 H-NS histone family protein compare
IAI47_02625 -0.7 -5.3 ribonuclease R compare
IAI47_04425 -0.7 -3.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_17145 -0.7 -5.3 phospholipid ABC transporter ATP-binding protein MlaF compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source TNT in Pantoea sp. MT58

For nitrogen source TNT across organisms