Experiment set12S327 for Pantoea sp. MT58

Compare to:

TNT nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
IAI47_04235 +3.1 22.4 RNA polymerase sigma factor RpoS compare
IAI47_01365 +3.0 2.0 inorganic phosphate transporter PitA compare
IAI47_03845 +2.4 14.9 serine protease compare
IAI47_05420 +2.2 1.4 PTS glucose transporter subunit IIA compare
IAI47_19945 +2.0 1.8 hypothetical protein compare
IAI47_17870 +1.9 14.3 conjugal transfer protein TraF compare
IAI47_01000 +1.5 12.7 HTH-type transcriptional regulator HdfR compare
IAI47_05580 +1.2 2.0 membrane protein YpdK compare
IAI47_13050 +1.2 2.7 YbjN domain-containing protein compare
IAI47_18540 +1.2 6.6 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_16410 +1.1 4.2 YbaK/EbsC family protein compare
IAI47_11830 +1.1 7.0 muramoyltetrapeptide carboxypeptidase compare
IAI47_09020 +1.1 6.7 patatin-like phospholipase RssA compare
IAI47_19585 +1.1 8.2 EAL domain-containing protein compare
IAI47_05255 +1.0 5.9 thioredoxin-dependent thiol peroxidase compare
IAI47_09245 +1.0 3.8 YmiA family putative membrane protein compare
IAI47_12280 +1.0 7.2 glucan biosynthesis protein G compare
IAI47_13480 +1.0 2.9 molybdopterin synthase sulfur carrier subunit compare
IAI47_12275 +1.0 8.4 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_11210 +0.9 5.8 type VI secretion system-associated protein TagF compare
IAI47_08590 +0.9 2.8 hypothetical protein compare
IAI47_14955 +0.9 2.6 phosphate starvation-inducible protein compare
IAI47_21680 +0.9 2.7 hypothetical protein compare
IAI47_09580 +0.8 2.2 FNR family transcription factor compare
IAI47_01695 +0.8 7.1 glycogen synthase GlgA compare
IAI47_07475 +0.8 1.3 hypothetical protein compare
IAI47_09015 +0.8 4.0 YchJ family protein compare
IAI47_01680 +0.8 7.0 1,4-alpha-glucan branching enzyme compare
IAI47_07930 +0.8 0.7 DUF2158 domain-containing protein compare
IAI47_12565 +0.8 6.3 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_00885 +0.7 6.2 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI47_06940 +0.7 0.5 tyrosine-protein kinase Wzc compare
IAI47_07450 +0.7 1.9 winged helix-turn-helix domain-containing protein compare
IAI47_21610 +0.7 5.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_15595 +0.7 0.5 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_04855 +0.7 2.4 anti-sigma-E factor RseA compare
IAI47_12790 +0.7 0.6 chromosome partition protein MukE compare
IAI47_15130 +0.7 4.9 sigma factor-binding protein Crl compare
IAI47_13885 +0.7 0.9 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_12220 +0.7 2.6 DNA damage-inducible protein I compare
IAI47_18685 +0.7 3.8 HTH-type transcriptional regulator compare
IAI47_12545 +0.7 2.1 general stress protein compare
IAI47_18580 +0.6 5.0 insulinase family protein compare
IAI47_01180 +0.6 0.9 prolyl oligopeptidase family serine peptidase compare
IAI47_13510 +0.6 3.6 ATP-binding cassette domain-containing protein compare
IAI47_09615 +0.6 3.1 LysR family transcriptional regulator compare
IAI47_16990 +0.6 1.4 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_08455 +0.6 3.3 zinc ABC transporter permease subunit ZnuB compare
IAI47_14555 +0.6 2.1 hemolysin expression modulator Hha compare
IAI47_11690 +0.6 4.0 type VI secretion system baseplate subunit TssK compare
IAI47_00870 +0.6 0.4 50S ribosomal protein L31 compare
IAI47_12355 +0.6 1.1 hydroxymyristoyl-ACP dehydratase compare
IAI47_07030 +0.6 3.7 HAD family hydrolase compare
IAI47_01835 +0.6 3.3 Hsp33 family molecular chaperone HslO compare
IAI47_14930 +0.6 1.7 shikimate kinase AroL compare
IAI47_08460 +0.6 3.5 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_08465 +0.6 3.6 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_17050 +0.6 2.3 preprotein translocase subunit SecG compare
IAI47_21015 +0.6 1.5 helix-turn-helix transcriptional regulator compare
IAI47_15980 +0.6 3.6 catabolite repressor/activator compare
IAI47_19540 +0.6 3.5 nitroreductase family protein compare
IAI47_15155 +0.6 2.0 DUF943 family protein compare
IAI47_16430 +0.6 1.9 histidine phosphatase family protein compare
IAI47_18265 +0.5 1.2 Sec-independent protein translocase subunit TatB compare
IAI47_05490 +0.5 2.2 tRNA-Val compare
IAI47_10470 +0.5 0.7 electron transport complex subunit E compare
IAI47_16415 +0.5 4.1 nucleoside hydrolase compare
IAI47_15895 +0.5 1.3 secA regulator SecM compare
IAI47_08800 +0.5 2.2 YoaH family protein compare
IAI47_18930 +0.5 1.7 carboxymuconolactone decarboxylase family protein compare
IAI47_07525 +0.5 1.5 conjugal transfer protein TraD compare
IAI47_05540 +0.5 2.7 DUF2502 domain-containing protein compare
IAI47_00730 +0.5 1.7 glutaredoxin 3 compare
IAI47_02655 +0.5 2.0 hypothetical protein compare
IAI47_16205 +0.5 3.0 threonine synthase compare
IAI47_11685 +0.5 3.4 DotU family type VI secretion system protein compare
IAI47_12925 +0.5 1.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_11520 +0.5 2.0 type VI secretion system tip protein VgrG compare
IAI47_01545 +0.5 2.5 cell division ATP-binding protein FtsE compare
IAI47_01550 +0.5 3.4 cell division protein FtsX compare
IAI47_10040 +0.5 2.1 helix-turn-helix transcriptional regulator compare
IAI47_13255 +0.5 2.0 imidazolonepropionase compare
IAI47_02590 +0.5 2.0 RNA chaperone Hfq compare
IAI47_16685 +0.5 2.2 DUF2501 domain-containing protein compare
IAI47_11225 +0.5 2.8 hypothetical protein compare
IAI47_14940 +0.5 0.8 YaiI/YqxD family protein compare
IAI47_09410 +0.5 1.8 phage shock protein PspD compare
IAI47_19030 +0.5 1.9 hypothetical protein compare
IAI47_19600 +0.5 1.7 ABC transporter ATP-binding protein compare
IAI47_07185 +0.5 2.7 substrate-binding domain-containing protein compare
IAI47_16055 +0.5 3.6 RNA polymerase-associated protein RapA compare
IAI47_13720 +0.5 1.3 cytochrome d ubiquinol oxidase subunit II compare
IAI47_07455 +0.5 1.9 hypothetical protein compare
IAI47_10320 +0.5 0.5 Rrf2 family transcriptional regulator compare
IAI47_11150 +0.5 2.3 D-threitol dehydrogenase compare
IAI47_11675 +0.5 2.7 type VI secretion system-associated protein TagF compare
IAI47_13825 +0.5 1.8 YbfA family protein compare
IAI47_15345 +0.5 3.9 murein transglycosylase D compare
IAI47_03940 +0.5 2.8 prepilin peptidase-dependent protein compare
IAI47_12435 +0.4 1.3 hypothetical protein compare
IAI47_18710 +0.4 2.9 MltR family transcriptional regulator compare
IAI47_15625 +0.4 1.7 RNA 2',3'-cyclic phosphodiesterase compare
IAI47_11610 +0.4 2.2 serine/threonine-protein phosphatase compare
IAI47_14210 +0.4 1.4 hypothetical protein compare
IAI47_03040 +0.4 2.8 TetR/AcrR family transcriptional regulator compare
IAI47_05520 +0.4 0.5 tRNA-Ala compare
IAI47_11220 +0.4 2.3 serine/threonine-protein phosphatase compare
IAI47_09195 +0.4 2.3 PHP domain-containing protein compare
IAI47_07790 +0.4 1.3 ribose 1,5-bisphosphokinase compare
IAI47_11005 +0.4 2.8 YniB family protein compare
IAI47_09040 +0.4 0.2 NAD-dependent epimerase compare
IAI47_13300 +0.4 1.4 GNAT family N-acetyltransferase compare
IAI47_21675 +0.4 1.6 helix-turn-helix domain-containing protein compare
IAI47_14490 +0.4 1.7 primosomal replication protein compare
IAI47_02265 +0.4 2.0 alternative ribosome-rescue factor A compare
IAI47_11110 +0.4 1.9 MarR family transcriptional regulator compare
IAI47_20660 +0.4 2.4 lycopene beta-cyclase CrtY compare
IAI47_12570 +0.4 0.7 tRNA-Ser compare
IAI47_02040 +0.4 2.1 peptidylprolyl isomerase compare
IAI47_18675 +0.4 1.9 MarR family transcriptional regulator compare
IAI47_18735 +0.4 1.5 DeoR/GlpR transcriptional regulator compare
IAI47_08955 +0.4 1.8 DUF1315 family protein compare
IAI47_04070 +0.4 1.8 flavodoxin compare
IAI47_19690 +0.4 0.7 hypothetical protein compare
IAI47_05340 +0.4 3.0 DUF1176 domain-containing protein compare
IAI47_17565 +0.4 1.5 N-acetylglucosamine kinase compare
IAI47_17620 +0.4 1.4 VOC family metalloprotein YjdN compare
IAI47_03505 +0.4 2.4 SelT/SelW/SelH family protein compare
IAI47_15840 +0.4 2.2 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
IAI47_21600 +0.4 1.3 EamA family transporter compare
IAI47_17895 +0.4 1.8 diacylglycerol kinase compare
IAI47_06520 +0.4 1.6 hypothetical protein compare
IAI47_15920 +0.4 1.8 D-alanine--D-alanine ligase compare
IAI47_08040 +0.4 1.6 hypothetical protein compare
IAI47_03080 +0.4 3.1 undecaprenyl-diphosphate phosphatase compare
IAI47_15975 +0.4 1.8 division/cell wall cluster transcriptional repressor MraZ compare
IAI47_11360 +0.4 0.9 hypothetical protein compare
IAI47_15090 +0.4 1.6 hypothetical protein compare
IAI47_12775 +0.4 2.6 YcbK family protein compare
IAI47_10435 +0.4 1.6 transcription modulator YdgT compare
IAI47_06265 +0.4 2.6 cell division protein DedD compare
IAI47_19575 +0.4 1.4 hypothetical protein compare
IAI47_14985 +0.4 1.6 hypothetical protein compare
IAI47_05375 +0.4 1.3 DUF2919 domain-containing protein compare
IAI47_21565 +0.4 2.1 FAD-dependent oxidoreductase compare
IAI47_11745 +0.4 2.0 phosphatase compare
IAI47_04755 +0.4 1.5 AlpA family transcriptional regulator compare
IAI47_01330 +0.4 1.8 ribonuclease Z compare
IAI47_20585 +0.4 2.2 dihydroxyacetone kinase subunit DhaK compare
IAI47_05150 +0.4 2.4 exopolyphosphatase compare
IAI47_09390 +0.4 2.2 phage shock protein operon transcriptional activator compare
IAI47_07005 +0.4 2.4 glycosyltransferase family 4 protein compare
IAI47_06585 +0.4 1.7 16S rRNA pseudouridine(516) synthase RsuA compare
IAI47_04750 +0.4 1.2 hypothetical protein compare
IAI47_11680 +0.4 3.2 type VI secretion system membrane subunit TssM compare
IAI47_17560 +0.4 0.3 ROK family transcriptional regulator compare
IAI47_04505 +0.4 2.3 transcriptional repressor MprA compare
IAI47_18775 +0.4 2.0 hypothetical protein compare
IAI47_13850 +0.4 1.3 LexA regulated protein compare
IAI47_14960 +0.4 1.3 anti-adapter protein IraP compare
IAI47_21735 +0.4 1.9 LysR family transcriptional regulator compare
IAI47_03600 +0.4 2.1 type IV pilus twitching motility protein PilT compare
IAI47_08860 +0.4 2.0 YcgL domain-containing protein compare
IAI47_14495 +0.4 1.3 hypothetical protein compare
IAI47_15400 +0.4 2.1 Rcs stress response system protein RcsF compare
IAI47_03550 +0.4 2.7 membrane-bound lytic murein transglycosylase MltC compare
IAI47_13700 +0.4 1.0 Tol-Pal system protein TolQ compare
IAI47_21245 +0.4 2.4 alcohol dehydrogenase catalytic domain-containing protein compare
IAI47_06240 +0.4 1.7 aspartate-semialdehyde dehydrogenase compare
IAI47_14785 +0.3 1.4 DUF3251 domain-containing protein compare
IAI47_02045 +0.3 1.1 SlyX family protein compare
IAI47_14075 +0.3 0.5 transcription antiterminator/RNA stability regulator CspE compare
IAI47_04950 +0.3 1.9 nitrogen regulatory protein P-II compare
IAI47_01950 +0.3 1.5 aminodeoxychorismate/anthranilate synthase component II compare
IAI47_10785 +0.3 2.2 C40 family peptidase compare
IAI47_05670 +0.3 1.2 AlpA family transcriptional regulator compare
IAI47_11880 +0.3 0.7 hypothetical protein compare
IAI47_01685 +0.3 2.6 glycogen debranching protein GlgX compare
IAI47_09635 +0.3 1.4 hypothetical protein compare
IAI47_04575 +0.3 2.7 spermidine N1-acetyltransferase compare
IAI47_11765 +0.3 1.7 GlsB/YeaQ/YmgE family stress response membrane protein compare
IAI47_16490 +0.3 1.5 PTS sugar transporter subunit IIA compare
IAI47_02400 +0.3 0.5 YhdT family protein compare
IAI47_21530 +0.3 1.5 FeoA domain-containing protein compare
IAI47_12285 +0.3 2.7 glucans biosynthesis protein MdoC compare
IAI47_09800 +0.3 1.6 YnfA family protein compare
IAI47_20265 +0.3 1.1 DUF1641 domain-containing protein compare
IAI47_01980 +0.3 1.8 YheU family protein compare
IAI47_09675 +0.3 0.9 YoaK family small membrane protein compare
IAI47_06920 +0.3 2.6 TerC family protein compare
IAI47_14155 +0.3 2.0 hypothetical protein compare
IAI47_12145 +0.3 1.7 flagellar basal body rod protein FlgF compare
IAI47_06670 +0.3 2.3 YeiH family putative sulfate export transporter compare
IAI47_03515 +0.3 1.9 hemin-degrading factor compare
IAI47_09360 +0.3 0.5 peptide ABC transporter ATP-binding protein SapF compare
IAI47_13475 +0.3 0.8 molybdopterin synthase catalytic subunit MoaE compare
IAI47_10240 +0.3 1.5 helix-turn-helix transcriptional regulator compare
IAI47_09480 +0.3 1.4 hypothetical protein compare
IAI47_02820 +0.3 2.2 LysR family transcriptional regulator compare
IAI47_09400 +0.3 1.3 envelope stress response membrane protein PspB compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source TNT in Pantoea sp. MT58

For nitrogen source TNT across organisms