Experiment set12S327 for Pantoea sp. MT58

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TNT nitrogen source

Group: nitrogen source
Media: M9 minimal media_noNitrogen + TNT (0.44 mM)
Culturing: MT058_ML2
By: Alex Rivier on 1/9/25
Media components: 4 g/L D-Glucose, 2 mM Magnesium sulfate, 0.1 mM Calcium chloride, 12.8 g/L Sodium phosphate dibasic heptahydrate, 3 g/L Potassium phosphate monobasic, 0.5 g/L Sodium Chloride

Specific Phenotypes

For 12 genes in this experiment

For nitrogen source TNT in Pantoea sp. MT58

For nitrogen source TNT across organisms

SEED Subsystems

Subsystem #Specific
Multidrug Resistance Efflux Pumps 2
Bacterial hemoglobins 1
Glutathione: Redox cycle 1
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
di-trans,poly-cis-undecaprenyl phosphate biosynthesis 2 2 1
glutathione-peroxide redox reactions 3 2 1
microcin B17 biosynthesis 3 1 1
polyisoprenoid biosynthesis (E. coli) 5 5 1
Salmonella enterica serotype O:3,10 O antigen biosynthesis 5 1 1
Salmonella enterica serotype O:9,46 O antigen biosynthesis 6 1 1
Salmonella enterica serotype O:2 O antigen biosynthesis 6 1 1
Salmonella enterica serotype O:9 O antigen biosynthesis 6 1 1
Salmonella enterica serotype O:4 O antigen biosynthesis (group B1) 6 1 1
Porphyromonas gingivalis O-LPS antigen biosynthesis 6 1 1
Salmonella enterica serotype O:8 O antigen biosynthesis 8 1 1
Salmonella enterica serotype O:9,46,27 O antigen biosynthesis 9 1 1
succinoglycan biosynthesis 14 1 1