Experiment set12S323 for Pantoea sp. MT58

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -5.4 -2.4 Tol-Pal system protein TolB compare
IAI47_20705 -5.3 -1.2 sulfur carrier protein ThiS compare
IAI47_07090 -5.0 -7.7 histidinol dehydrogenase compare
IAI47_17225 -4.9 -18.0 sulfite reductase subunit alpha compare
IAI47_00905 -4.9 -12.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_00915 -4.7 -14.0 argininosuccinate synthase compare
IAI47_01030 -4.7 -15.1 branched-chain amino acid transaminase compare
IAI47_07080 -4.6 -11.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_18045 -4.6 -3.2 phosphoribosylamine--glycine ligase compare
IAI47_06275 -4.5 -12.3 amidophosphoribosyltransferase compare
IAI47_06235 -4.5 -3.1 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_04895 -4.5 -3.1 pyridoxine 5'-phosphate synthase compare
IAI47_17220 -4.5 -28.0 glutamate synthase large subunit compare
IAI47_00920 -4.4 -17.5 argininosuccinate lyase compare
IAI47_16350 -4.4 -3.0 phosphoserine phosphatase compare
IAI47_04930 -4.4 -7.3 phosphoribosylformylglycinamidine synthase compare
IAI47_07075 -4.3 -9.1 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_03975 -4.2 -16.5 amino-acid N-acetyltransferase compare
IAI47_13900 -4.2 -6.5 asparagine synthase B compare
IAI47_05180 -4.2 -9.4 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_00910 -4.1 -11.5 acetylglutamate kinase compare
IAI47_01040 -4.1 -13.6 threonine ammonia-lyase, biosynthetic compare
IAI47_09170 -4.1 -16.8 tryptophan synthase subunit beta compare
IAI47_07085 -4.0 -15.1 histidinol-phosphate transaminase compare
IAI47_03725 -4.0 -3.9 phosphoglycerate dehydrogenase compare
IAI47_00895 -4.0 -20.7 phosphoenolpyruvate carboxylase compare
IAI47_00455 -3.9 -8.4 nitrogen regulation protein NR(II) compare
IAI47_01050 -3.9 -17.4 ketol-acid reductoisomerase compare
IAI47_14355 -3.8 -2.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_16830 -3.8 -14.7 ornithine carbamoyltransferase compare
IAI47_16080 -3.8 -9.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_08440 -3.8 -2.5 crossover junction endodeoxyribonuclease RuvC compare
IAI47_08705 -3.8 -14.7 carboxy terminal-processing peptidase compare
IAI47_16005 -3.7 -12.9 3-isopropylmalate dehydrogenase compare
IAI47_00755 -3.7 -11.1 envelope stress sensor histidine kinase CpxA compare
IAI47_18040 -3.6 -4.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_03860 -3.6 -12.6 diaminopimelate decarboxylase compare
IAI47_09190 -3.5 -13.1 anthranilate synthase component 1 compare
IAI47_09165 -3.5 -11.1 tryptophan synthase subunit alpha compare
IAI47_04335 -3.5 -4.3 tRNA-Arg compare
IAI47_15115 -3.5 -7.7 glutamate-5-semialdehyde dehydrogenase compare
IAI47_14350 -3.4 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_07070 -3.4 -6.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_16205 -3.4 -9.2 threonine synthase compare
IAI47_16210 -3.3 -10.2 homoserine kinase compare
IAI47_17205 -3.3 -1.1 PTS phosphocarrier protein NPr compare
IAI47_09275 -3.3 -2.3 orotidine-5'-phosphate decarboxylase compare
IAI47_17900 -3.3 -1.3 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_01035 -3.3 -16.1 dihydroxy-acid dehydratase compare
IAI47_16215 -3.3 -15.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_18015 -3.3 -15.6 homoserine O-succinyltransferase compare
IAI47_07065 -3.2 -9.8 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_09180 -3.2 -10.7 anthranilate phosphoribosyltransferase compare
IAI47_07095 -3.2 -8.3 ATP phosphoribosyltransferase compare
IAI47_16120 -3.2 -2.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_18145 -3.2 -1.9 elongation factor Tu compare
IAI47_00900 -3.2 -11.5 acetylornithine deacetylase compare
IAI47_15120 -3.2 -5.3 glutamate 5-kinase compare
IAI47_16010 -3.2 -13.6 3-isopropylmalate dehydratase large subunit compare
IAI47_15970 -3.1 -1.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_04190 -3.1 -2.2 adenylyl-sulfate kinase compare
IAI47_00735 -3.1 -1.7 protein-export chaperone SecB compare
IAI47_09010 -3.1 -7.9 formyltetrahydrofolate deformylase compare
IAI47_00780 -3.1 -2.1 6-phosphofructokinase compare
IAI47_09185 -3.0 -4.1 glutamine amidotransferase compare
IAI47_00880 -3.0 -12.7 cystathionine gamma-synthase compare
IAI47_09175 -3.0 -10.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_12705 -3.0 -2.1 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_05275 -3.0 -2.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_07060 -3.0 -8.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_12215 -3.0 -2.0 dihydroorotase compare
IAI47_17965 -3.0 -12.0 glucose-6-phosphate isomerase compare
IAI47_16000 -2.9 -13.1 2-isopropylmalate synthase compare
IAI47_07550 -2.9 -1.3 tRNA-Asn compare
IAI47_12915 -2.9 -9.4 leucine-responsive transcriptional regulator Lrp compare
IAI47_00300 -2.9 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_17185 -2.8 -5.7 RNA polymerase factor sigma-54 compare
IAI47_13065 -2.8 -2.6 DUF1418 family protein compare
IAI47_16115 -2.8 -7.6 carbamoyl-phosphate synthase large subunit compare
IAI47_10320 -2.8 -0.9 Rrf2 family transcriptional regulator compare
IAI47_13695 -2.8 -0.6 colicin uptake protein TolR compare
IAI47_15660 -2.8 -5.7 pantoate--beta-alanine ligase conserved
IAI47_17215 -2.8 -0.9 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_16860 -2.8 -6.6 aspartate carbamoyltransferase compare
IAI47_12060 -2.7 -4.1 beta-ketoacyl-ACP synthase II compare
IAI47_12865 -2.7 -1.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_00450 -2.7 -10.0 nitrogen regulation protein NR(I) compare
IAI47_18315 -2.6 -5.2 HTH-type transcriptional regulator MetR compare
IAI47_13770 -2.6 -9.9 citrate synthase compare
IAI47_13745 -2.6 -4.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_13690 -2.5 -0.5 cell envelope integrity protein TolA compare
IAI47_08845 -2.4 -1.3 cell division topological specificity factor MinE compare
IAI47_07480 -2.4 -3.1 hypothetical protein compare
IAI47_19850 -2.4 -3.7 hypothetical protein compare
IAI47_01740 -2.4 -2.0 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_00730 -2.4 -2.5 glutaredoxin 3 compare
IAI47_21450 -2.4 -1.2 general stress protein compare
IAI47_15025 -2.4 -2.0 transcriptional regulator LldR compare
IAI47_15635 -2.3 -1.1 RNA polymerase-binding protein DksA compare
IAI47_19675 -2.3 -2.3 ParD-like family protein compare
IAI47_06475 -2.3 -5.9 transcriptional regulator RcsB compare
IAI47_13180 -2.3 -4.9 manganese-binding transcriptional regulator MntR compare
IAI47_04410 -2.3 -9.6 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_05440 -2.3 -8.0 cysteine synthase A compare
IAI47_19295 -2.3 -2.4 hypothetical protein compare
IAI47_07020 -2.3 -1.7 hypothetical protein compare
IAI47_11200 -2.2 -4.6 DotU family type IV/VI secretion system protein compare
IAI47_20850 -2.2 -3.9 TetR/AcrR family transcriptional regulator compare
IAI47_06360 -2.2 -2.2 NADH-quinone oxidoreductase subunit A compare
IAI47_08435 -2.1 -1.4 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_11930 -2.1 -1.4 two-component system response regulator PhoP compare
IAI47_18090 -2.1 -8.7 thiamine phosphate synthase compare
IAI47_14945 -2.1 -1.4 pyrroline-5-carboxylate reductase compare
IAI47_04605 -2.0 -2.8 magnesium-translocating P-type ATPase compare
IAI47_04150 -2.0 -9.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_06810 -2.0 -4.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
IAI47_03855 -2.0 -5.3 LysR family transcriptional regulator compare
IAI47_10520 -2.0 -1.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_17000 -2.0 -8.2 lipoprotein NlpI compare
IAI47_03235 -2.0 -4.8 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_02750 -1.9 -11.4 class 1 fructose-bisphosphatase compare
IAI47_01750 -1.9 -5.1 glycerol-3-phosphate dehydrogenase compare
IAI47_13700 -1.9 -3.3 Tol-Pal system protein TolQ compare
IAI47_06385 -1.9 -4.3 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_02090 -1.9 -3.1 elongation factor Tu compare
IAI47_13950 -1.9 -1.2 PhoH family protein compare
IAI47_13530 -1.9 -6.3 biotin synthase BioB compare
IAI47_16870 -1.9 -4.0 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_08040 -1.8 -2.9 hypothetical protein compare
IAI47_00110 -1.8 -5.3 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_00600 -1.8 -2.8 orotate phosphoribosyltransferase compare
IAI47_10840 -1.8 -3.8 pyruvate kinase PykF compare
IAI47_04450 -1.8 -1.5 tRNA-Ala compare
IAI47_05035 -1.8 -2.4 nucleoside-diphosphate kinase compare
IAI47_15655 -1.8 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase conserved
IAI47_01955 -1.8 -7.3 aspartate aminotransferase family protein compare
IAI47_14470 -1.8 -1.7 YbaB/EbfC family nucleoid-associated protein compare
IAI47_16015 -1.7 -3.7 3-isopropylmalate dehydratase small subunit compare
IAI47_14775 -1.7 -2.4 transcriptional regulator NrdR compare
IAI47_08430 -1.7 -2.6 dihydroneopterin triphosphate diphosphatase compare
IAI47_04185 -1.7 -7.9 sulfate adenylyltransferase subunit CysN compare
IAI47_02585 -1.7 -1.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_05745 -1.7 -1.8 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_04155 -1.7 -8.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_08405 -1.7 -5.0 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
IAI47_13535 -1.6 -7.1 adenosylmethionine--8-amino-7-oxononanoate transaminase conserved
IAI47_02725 -1.6 -5.0 gamma-glutamylcyclotransferase compare
IAI47_20680 -1.6 -2.9 hypothetical protein compare
IAI47_19050 -1.6 -2.3 hypothetical protein compare
IAI47_04175 -1.6 -5.4 uroporphyrinogen-III C-methyltransferase compare
IAI47_17385 -1.6 -2.0 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_20695 -1.6 -5.5 HesA/MoeB/ThiF family protein compare
IAI47_20755 -1.5 -6.0 methionine synthase compare
IAI47_03805 -1.5 -4.0 FAD assembly factor SdhE compare
IAI47_13515 -1.5 -4.7 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_10145 -1.5 -2.6 winged helix-turn-helix transcriptional regulator compare
IAI47_00465 -1.5 -4.6 ribosome-dependent GTPase TypA compare
IAI47_12800 -1.5 -2.7 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
IAI47_04750 -1.5 -1.5 hypothetical protein compare
IAI47_08450 -1.5 -2.6 Holliday junction branch migration DNA helicase RuvB compare
IAI47_20600 -1.5 -1.4 hypothetical protein compare
IAI47_15110 -1.5 -3.4 chromophore lyase compare
IAI47_06805 -1.5 -4.0 hydroxyethylthiazole kinase compare
IAI47_01100 -1.5 -7.7 malate dehydrogenase (quinone) compare
IAI47_11550 -1.5 -1.6 hypothetical protein compare
IAI47_13310 -1.5 -4.2 MerR family transcriptional regulator compare
IAI47_14805 -1.4 -4.7 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_05155 -1.4 -7.8 polyphosphate kinase 1 compare
IAI47_19040 -1.4 -4.1 hypothetical protein compare
IAI47_11310 -1.4 -2.3 redox-regulated ATPase YchF compare
IAI47_06455 -1.4 -3.5 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_13740 -1.4 -0.6 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_04870 -1.4 -3.8 elongation factor 4 compare
IAI47_02350 -1.3 -0.7 tRNA-Thr compare
IAI47_06355 -1.3 -5.2 transcriptional regulator LrhA compare
IAI47_11600 -1.3 -3.9 protein of avirulence locus ImpE compare
IAI47_14680 -1.3 -4.0 cytochrome o ubiquinol oxidase subunit II compare
IAI47_00290 -1.3 -2.4 F0F1 ATP synthase subunit I compare
IAI47_05425 -1.3 -2.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_01840 -1.3 -3.1 ribosome-associated heat shock protein Hsp15 compare
IAI47_11935 -1.3 -4.8 two-component system sensor histidine kinase PhoQ compare
IAI47_20630 -1.3 -3.5 DUF2534 family protein compare
IAI47_01475 -1.2 -4.3 MurR/RpiR family transcriptional regulator compare
IAI47_02400 -1.2 -0.5 YhdT family protein compare
IAI47_18085 -1.2 -7.2 phosphomethylpyrimidine synthase ThiC compare
IAI47_13795 -1.2 -3.9 5-oxoprolinase subunit PxpA compare
IAI47_04180 -1.2 -4.6 sulfate adenylyltransferase subunit CysD compare
IAI47_16795 -1.2 -4.4 leucyl aminopeptidase compare
IAI47_07475 -1.2 -0.6 hypothetical protein compare
IAI47_00595 -1.2 -3.8 ribonuclease PH compare
IAI47_05465 -1.2 -2.5 bile acid:sodium symporter compare
IAI47_20710 -1.2 -4.1 FAD-dependent oxidoreductase compare
IAI47_00930 -1.2 -5.2 DNA-binding transcriptional regulator OxyR compare
IAI47_06120 -1.2 -1.9 YfcZ/YiiS family protein compare
IAI47_01045 -1.2 -4.1 HTH-type transcriptional activator IlvY compare
IAI47_12175 -1.1 -2.0 anti-sigma-28 factor FlgM compare
IAI47_02765 -1.1 -5.8 metalloprotease PmbA compare
IAI47_20780 -1.1 -2.3 cupin domain-containing protein compare
IAI47_11630 -1.1 -1.8 hypothetical protein compare
IAI47_18250 -1.1 -3.2 transcription/translation regulatory transformer protein RfaH compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Ammonium chloride in Pantoea sp. MT58

For nitrogen source Ammonium chloride across organisms