Experiment set12S323 for Pantoea sp. MT58

Compare to:

Ammonium chloride nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
IAI47_04235 +2.9 19.8 RNA polymerase sigma factor RpoS compare
IAI47_03845 +2.3 14.0 serine protease compare
IAI47_17870 +1.8 12.4 conjugal transfer protein TraF compare
IAI47_19945 +1.6 0.8 hypothetical protein compare
IAI47_09580 +1.4 2.5 FNR family transcription factor compare
IAI47_12275 +1.2 9.6 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_00940 +1.2 6.8 HTH-type transcriptional repressor FabR compare
IAI47_07930 +1.2 1.1 DUF2158 domain-containing protein compare
IAI47_15895 +1.1 1.9 secA regulator SecM compare
IAI47_15595 +1.0 0.5 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_12280 +1.0 6.5 glucan biosynthesis protein G compare
IAI47_10755 +1.0 1.7 DUF1289 domain-containing protein compare
IAI47_08035 +1.0 1.4 flagellar hook-basal body complex protein FliE compare
IAI47_05630 +1.0 1.6 hypothetical protein compare
IAI47_12355 +1.0 2.3 hydroxymyristoyl-ACP dehydratase compare
IAI47_19550 +0.9 0.9 DUF1471 domain-containing protein compare
IAI47_10565 +0.9 1.6 DUF4113 domain-containing protein compare
IAI47_03865 +0.9 1.5 PTS lactose/cellobiose transporter subunit IIA compare
IAI47_08800 +0.9 1.6 YoaH family protein compare
IAI47_12545 +0.9 1.9 general stress protein compare
IAI47_04070 +0.9 2.8 flavodoxin compare
IAI47_17170 +0.9 3.6 LPS export ABC transporter periplasmic protein LptC compare
IAI47_18770 +0.8 1.9 type I addiction module toxin, SymE family compare
IAI47_09945 +0.8 2.5 hydroxyisourate hydrolase compare
IAI47_06940 +0.8 0.4 tyrosine-protein kinase Wzc compare
IAI47_01125 +0.8 2.4 stress response protein AzuC compare
IAI47_18930 +0.8 1.6 carboxymuconolactone decarboxylase family protein compare
IAI47_05195 +0.8 1.0 DnaA inactivator Hda compare
IAI47_21655 +0.8 0.7 LacI family DNA-binding transcriptional regulator compare
IAI47_09020 +0.8 4.2 patatin-like phospholipase RssA compare
IAI47_00675 +0.8 6.0 glycosyltransferase family 9 protein compare
IAI47_11210 +0.8 4.1 type VI secretion system-associated protein TagF compare
IAI47_21235 +0.8 0.9 hypothetical protein compare
IAI47_06955 +0.8 4.6 acyltransferase compare
IAI47_12565 +0.8 5.5 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_04865 +0.8 1.0 SoxR-reducing system protein RseC compare
IAI47_21335 +0.8 2.4 RepB family plasmid replication initiator protein compare
IAI47_11260 +0.8 2.4 SirB2 family protein compare
IAI47_15425 +0.8 3.1 Rho-binding antiterminator compare
IAI47_07040 +0.8 1.0 acyltransferase compare
IAI47_18055 +0.8 2.5 DNA-binding protein HU-alpha compare
IAI47_19275 +0.7 2.1 DMT family transporter compare
IAI47_08755 +0.7 2.3 DUF986 domain-containing protein compare
IAI47_00885 +0.7 5.1 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI47_14930 +0.7 1.5 shikimate kinase AroL compare
IAI47_12435 +0.7 1.6 hypothetical protein compare
IAI47_07450 +0.7 1.1 winged helix-turn-helix domain-containing protein compare
IAI47_09245 +0.7 2.2 YmiA family putative membrane protein compare
IAI47_14960 +0.7 1.5 anti-adapter protein IraP compare
IAI47_10260 +0.7 2.7 MarR family transcriptional regulator compare
IAI47_02385 +0.7 3.9 tRNA dihydrouridine synthase DusB compare
IAI47_03820 +0.7 2.0 site-specific tyrosine recombinase XerD compare
IAI47_07045 +0.7 3.6 succinylglutamate desuccinylase/aspartoacylase family protein compare
IAI47_08355 +0.7 1.8 flagellar protein FlhE compare
IAI47_21680 +0.7 1.9 hypothetical protein compare
IAI47_05830 +0.7 1.6 hypothetical protein compare
IAI47_05735 +0.7 1.3 hypothetical protein compare
IAI47_12145 +0.7 2.5 flagellar basal body rod protein FlgF compare
IAI47_03550 +0.7 4.1 membrane-bound lytic murein transglycosylase MltC compare
IAI47_13925 +0.7 1.0 tRNA-Met compare
IAI47_14955 +0.6 1.1 phosphate starvation-inducible protein compare
IAI47_15130 +0.6 3.8 sigma factor-binding protein Crl compare
IAI47_08445 +0.6 0.5 Holliday junction branch migration protein RuvA compare
IAI47_18765 +0.6 1.4 damage-inducible protein J compare
IAI47_07985 +0.6 2.2 flagellar biosynthetic protein FliO compare
IAI47_13890 +0.6 2.4 ROK family transcriptional regulator compare
IAI47_20555 +0.6 1.4 ATP-binding cassette domain-containing protein compare
IAI47_17255 +0.6 1.2 DUF1043 family protein compare
IAI47_06565 +0.6 0.7 YejL family protein compare
IAI47_14780 +0.6 2.1 peptidoglycan-binding protein LysM compare
IAI47_11150 +0.6 1.0 D-threitol dehydrogenase compare
IAI47_15305 +0.6 1.1 allantoin racemase compare
IAI47_19545 +0.6 3.2 MFS transporter compare
IAI47_08850 +0.6 2.0 septum site-determining protein MinD compare
IAI47_08975 +0.6 1.7 NAD(P)H nitroreductase compare
IAI47_03505 +0.6 2.5 SelT/SelW/SelH family protein compare
IAI47_17910 +0.6 0.9 chorismate lyase compare
IAI47_08605 +0.6 1.2 hypothetical protein compare
IAI47_07375 +0.6 2.2 ABC transporter permease compare
IAI47_13475 +0.6 1.1 molybdopterin synthase catalytic subunit MoaE compare
IAI47_14525 +0.6 2.0 50S ribosomal protein L36 compare
IAI47_19750 +0.6 1.3 GNAT family N-acetyltransferase compare
IAI47_10430 +0.6 1.2 hypothetical protein compare
IAI47_11595 +0.6 2.2 type VI secretion system baseplate subunit TssE compare
IAI47_05050 +0.6 1.9 cytoskeleton protein RodZ compare
IAI47_21155 +0.6 1.3 IS6 family transposase compare
IAI47_12715 +0.6 3.6 glycosyltransferase family 2 protein compare
IAI47_05950 +0.6 1.4 head-tail adaptor compare
IAI47_18580 +0.6 3.6 insulinase family protein compare
IAI47_04855 +0.5 1.7 anti-sigma-E factor RseA compare
IAI47_05520 +0.5 0.4 tRNA-Ala compare
IAI47_12170 +0.5 2.5 flagellar basal body P-ring formation protein FlgA compare
IAI47_07510 +0.5 1.5 hypothetical protein compare
IAI47_16190 +0.5 1.3 molybdopterin adenylyltransferase compare
IAI47_19350 +0.5 1.3 DUF305 domain-containing protein compare
IAI47_01950 +0.5 1.9 aminodeoxychorismate/anthranilate synthase component II compare
IAI47_05810 +0.5 0.9 hypothetical protein compare
IAI47_12220 +0.5 1.6 DNA damage-inducible protein I compare
IAI47_19030 +0.5 1.4 hypothetical protein compare
IAI47_08025 +0.5 2.6 flagellar motor switch protein FliG compare
IAI47_19585 +0.5 3.5 EAL domain-containing protein compare
IAI47_08460 +0.5 2.5 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_09120 +0.5 1.3 hypothetical protein compare
IAI47_16560 +0.5 2.1 hypothetical protein compare
IAI47_16490 +0.5 1.3 PTS sugar transporter subunit IIA compare
IAI47_00670 +0.5 4.1 sugar glycosyltransferase compare
IAI47_04505 +0.5 2.2 transcriptional repressor MprA compare
IAI47_16430 +0.5 1.0 histidine phosphatase family protein compare
IAI47_15735 +0.5 2.1 four-carbon acid sugar kinase family protein compare
IAI47_15815 +0.5 1.6 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
IAI47_06030 +0.5 1.3 hypothetical protein compare
IAI47_12165 +0.5 1.8 flagellar basal body rod protein FlgB compare
IAI47_01940 +0.5 0.8 DUF2559 family protein compare
IAI47_05765 +0.5 0.7 hypothetical protein compare
IAI47_15850 +0.5 1.6 prepilin peptidase-dependent pilin compare
IAI47_06815 +0.5 1.8 GntR family transcriptional regulator compare
IAI47_06950 +0.5 2.9 SGNH/GDSL hydrolase family protein compare
IAI47_10285 +0.5 1.9 SrfC compare
IAI47_16900 +0.5 1.3 efflux RND transporter periplasmic adaptor subunit compare
IAI47_00845 +0.5 1.7 HslU--HslV peptidase ATPase subunit compare
IAI47_07485 +0.5 1.0 DUF4756 family protein compare
IAI47_06855 +0.5 2.4 two-component system sensor histidine kinase BaeS compare
IAI47_13885 +0.5 0.5 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_10795 +0.5 2.0 HTH-type transcriptional repressor PurR compare
IAI47_05240 +0.5 2.5 ABC transporter ATP-binding protein compare
IAI47_08010 +0.5 2.0 flagella biosynthesis chaperone FliJ compare
IAI47_11610 +0.5 2.3 serine/threonine-protein phosphatase compare
IAI47_03570 +0.5 1.3 YggL family protein compare
IAI47_06680 +0.5 1.6 LysR family transcriptional regulator compare
IAI47_00440 +0.5 1.9 Der GTPase-activating protein YihI compare
IAI47_06770 +0.5 2.2 CidA/LrgA family protein compare
IAI47_11685 +0.5 2.4 DotU family type VI secretion system protein compare
IAI47_08745 +0.5 1.2 transcription antiterminator/RNA stability regulator CspE compare
IAI47_01765 +0.5 2.1 DeoR/GlpR family transcriptional regulator compare
IAI47_12300 +0.5 0.8 hypothetical protein compare
IAI47_21280 +0.5 1.8 amino acid ABC transporter substrate-binding protein compare
IAI47_07975 +0.5 1.8 flagellar biosynthesis protein FliQ compare
IAI47_11140 +0.5 2.0 DUF2291 domain-containing protein compare
IAI47_09585 +0.5 2.1 DNA endonuclease SmrA compare
IAI47_21730 +0.5 1.4 hypothetical protein compare
IAI47_12085 +0.5 1.8 phosphate acyltransferase PlsX compare
IAI47_18270 +0.5 1.4 twin-arginine translocase TatA/TatE family subunit compare
IAI47_18685 +0.5 2.1 HTH-type transcriptional regulator compare
IAI47_09215 +0.5 1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
IAI47_13155 +0.5 0.7 H-NS histone family protein compare
IAI47_05870 +0.5 1.3 lysis protein compare
IAI47_05540 +0.5 2.0 DUF2502 domain-containing protein compare
IAI47_08955 +0.5 1.6 DUF1315 family protein compare
IAI47_21375 +0.5 1.7 CsbD family protein compare
IAI47_08270 +0.5 1.4 trehalose-phosphatase compare
IAI47_15875 +0.5 1.6 cell division protein ZapD compare
IAI47_07530 +0.4 1.6 type III restriction-modification system endonuclease compare
IAI47_11375 +0.4 0.6 hypothetical protein compare
IAI47_19430 +0.4 1.0 GNAT family N-acetyltransferase compare
IAI47_19035 +0.4 0.6 transcriptional regulator compare
IAI47_02655 +0.4 1.2 hypothetical protein compare
IAI47_06975 +0.4 2.6 amylovoran biosynthesis protein AmsF compare
IAI47_07700 +0.4 1.1 EAL domain-containing protein compare
IAI47_04965 +0.4 1.8 3-phenylpropionate MFS transporter compare
IAI47_11690 +0.4 1.9 type VI secretion system baseplate subunit TssK compare
IAI47_17200 +0.4 2.3 RNase adapter RapZ compare
IAI47_10400 +0.4 2.3 L-arabinose isomerase compare
IAI47_01180 +0.4 0.2 prolyl oligopeptidase family serine peptidase compare
IAI47_17475 +0.4 1.5 type VI secretion system contractile sheath small subunit compare
IAI47_01550 +0.4 2.2 cell division protein FtsX compare
IAI47_08030 +0.4 2.3 flagellar M-ring protein FliF compare
IAI47_15155 +0.4 0.8 DUF943 family protein compare
IAI47_20715 +0.4 1.6 helix-turn-helix transcriptional regulator compare
IAI47_16625 +0.4 2.5 IS3 family transposase compare
IAI47_00725 +0.4 1.2 rhodanese-like domain-containing protein compare
IAI47_03080 +0.4 2.9 undecaprenyl-diphosphate phosphatase compare
IAI47_14465 +0.4 1.1 recombination protein RecR compare
IAI47_08840 +0.4 1.3 ribonuclease D compare
IAI47_06470 +0.4 2.6 two-component system sensor histidine kinase RcsC compare
IAI47_03335 +0.4 1.5 M20 peptidase aminoacylase family protein compare
IAI47_13320 +0.4 1.2 ABC transporter ATP-binding protein compare
IAI47_10480 +0.4 1.7 HPP family protein compare
IAI47_03920 +0.4 2.8 phosphoenolpyruvate--protein phosphotransferase compare
IAI47_21805 +0.4 1.6 GNAT family N-acetyltransferase compare
IAI47_07755 +0.4 1.2 phosphonate C-P lyase system protein PhnG compare
IAI47_19270 +0.4 1.4 alpha/beta fold hydrolase compare
IAI47_04695 +0.4 1.2 hypothetical protein compare
IAI47_04245 +0.4 2.1 two-component system response regulator NarL compare
IAI47_17790 +0.4 1.5 transposase compare
IAI47_21880 +0.4 0.3 ParA family protein compare
IAI47_08105 +0.4 0.7 DinI family protein compare
IAI47_02040 +0.4 1.3 peptidylprolyl isomerase compare
IAI47_04050 +0.4 2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
IAI47_01500 +0.4 1.3 DcrB family lipoprotein compare
IAI47_12265 +0.4 1.6 secY/secA suppressor protein compare
IAI47_10595 +0.4 1.7 hypothetical protein compare
IAI47_02900 +0.4 1.1 transcriptional regulator ExuR compare
IAI47_00375 +0.4 3.4 ribose operon transcriptional repressor RbsR compare
IAI47_08815 +0.4 1.3 hypothetical protein compare
IAI47_12985 +0.4 0.8 heavy metal-binding domain-containing protein compare
IAI47_09105 +0.4 0.9 YciY family protein compare
IAI47_14020 +0.4 1.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI47_17510 +0.4 1.4 DUF1330 domain-containing protein compare
IAI47_11805 +0.4 1.7 sugar ABC transporter ATP-binding protein compare
IAI47_00945 +0.4 1.2 YijD family membrane protein compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Ammonium chloride in Pantoea sp. MT58

For nitrogen source Ammonium chloride across organisms