Experiment set12IT092 for Paraburkholderia graminis OAS925

Shikimic Acid 5 mM in soil extract

Group: soil extract
Media: Soil Extract + Shikimic Acid (5 mM)
Culturing: Burkholderia_OAS925_ML2, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Albina on 15-Mar-22

Specific Phenotypes

For 6 genes in this experiment

For soil extract Shikimic Acid in Paraburkholderia graminis OAS925

For soil extract Shikimic Acid across organisms

SEED Subsystems

Subsystem	#Specific
Homogentisate pathway of aromatic compound degradation	3
Aromatic amino acid degradation	2
Plastoquinone Biosynthesis	2
Tocopherol Biosynthesis	2
Chorismate Synthesis	1
Cinnamic Acid Degradation	1
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)	1
Gentisare degradation	1
Phenylpropanoid compound degradation	1
Salicylate and gentisate catabolism	1
p-Hydroxybenzoate degradation	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Ubiquinone and menaquinone biosynthesis
• Tyrosine metabolism
• Phenylalanine metabolism
• Phenylalanine, tyrosine and tryptophan biosynthesis
• Biosynthesis of phenylpropanoids
• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
plastoquinol-9 biosynthesis I	3	1	1
L-tyrosine degradation I	5	5	1
chorismate biosynthesis from 3-dehydroquinate	5	5	1
superpathway of plastoquinol biosynthesis	5	2	1
chorismate biosynthesis I	7	7	1
vitamin E biosynthesis (tocopherols)	7	1	1
L-phenylalanine degradation IV (mammalian, via side chain)	9	3	1
superpathway of L-tyrosine biosynthesis	10	10	1
superpathway of L-phenylalanine biosynthesis	10	10	1
chorismate biosynthesis II (archaea)	12	8	1
superpathway of L-tryptophan biosynthesis	13	13	1
superpathway of aromatic amino acid biosynthesis	18	18	1
superpathway of chorismate metabolism	59	42	1