Experiment set12IT087 for Pseudomonas fluorescens FW300-N2E2

Compare to:

No vitamins, timepoint 1

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3932 -4.1 -5.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4826 -4.0 -4.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3751 -3.9 -9.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5177 -3.9 -7.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_71 -3.9 -4.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3782 -3.8 -7.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3842 -3.7 -2.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3783 -3.7 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3839 -3.6 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4048 -3.6 -4.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2258 -3.5 -5.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5150 -3.5 -3.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3752 -3.4 -13.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4564 -3.4 -7.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_64 -3.4 -3.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3940 -3.3 -7.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4279 -3.3 -11.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4597 -3.3 -2.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3251 -3.2 -7.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_77 -3.1 -2.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3248 -3.1 -3.5 Probable transmembrane protein compare
Pf6N2E2_5223 -3.1 -4.0 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_3630 -3.0 -4.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3763 -2.9 -1.9 hypothetical protein compare
Pf6N2E2_3610 -2.9 -3.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4825 -2.9 -4.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4278 -2.9 -10.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3841 -2.8 -1.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_50 -2.8 -7.6 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4797 -2.8 -2.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2899 -2.8 -4.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4049 -2.8 -10.1 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5553 -2.7 -6.3 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_3346 -2.7 -4.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_4277 -2.7 -11.1 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3252 -2.7 -4.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5316 -2.7 -1.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5299 -2.7 -6.5 Benzoate transport protein compare
Pf6N2E2_63 -2.6 -5.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3253 -2.6 -4.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_66 -2.6 -7.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4596 -2.5 -5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2073 -2.5 -3.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2885 -2.5 -3.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_2863 -2.5 -5.8 Gluconate permease compare
Pf6N2E2_5176 -2.5 -1.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5175 -2.4 -4.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2074 -2.4 -1.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2897 -2.3 -6.6 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_5014 -2.3 -1.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4601 -2.3 -1.5 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3170 -2.3 -8.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2890 -2.3 -8.6 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_3537 -2.3 -2.6 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_302 -2.2 -2.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3806 -2.2 -4.5 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Pf6N2E2_4759 -2.2 -6.6 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5666 -2.1 -8.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4047 -2.0 -1.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3786 -2.0 -7.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_5257 -2.0 -9.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2999 -2.0 -1.8 probable tail fiber assembly protein compare
Pf6N2E2_2518 -2.0 -3.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3635 -2.0 -2.2 FIG00953138: hypothetical protein compare
Pf6N2E2_229 -1.9 -3.3 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_2758 -1.9 -11.4 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_2465 -1.9 -4.1 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5339 -1.9 -14.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4631 -1.8 -5.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_2889 -1.8 -8.8 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_5740 -1.8 -2.7 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_3480 -1.8 -0.9 Transcriptional regulator, ArsR family compare
Pf6N2E2_5338 -1.7 -15.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5258 -1.7 -6.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_5676 -1.7 -3.5 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5667 -1.7 -6.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2892 -1.7 -9.0 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_2864 -1.7 -2.4 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4761 -1.7 -5.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5337 -1.7 -13.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5520 -1.7 -5.9 Sensory box histidine kinase compare
Pf6N2E2_5006 -1.7 -2.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5728 -1.7 -3.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4763 -1.6 -5.6 Biotin synthesis protein BioC compare
Pf6N2E2_2896 -1.6 -3.3 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_4678 -1.6 -0.8 hypothetical protein compare
Pf6N2E2_4762 -1.6 -1.7 Biotin synthesis protein BioH compare
Pf6N2E2_2791 -1.6 -2.1 FIG00954883: hypothetical protein compare
Pf6N2E2_2281 -1.6 -2.4 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3271 -1.5 -1.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2895 -1.5 -5.2 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_4590 -1.5 -3.4 Thiazole biosynthesis protein ThiG compare
Pf6N2E2_2402 -1.5 -1.5 hypothetical protein compare
Pf6N2E2_5103 -1.5 -1.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3132 -1.5 -1.8 FIG00954548: hypothetical protein compare
Pf6N2E2_3938 -1.4 -8.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_2586 -1.4 -1.5 Hpt domain protein compare
Pf6N2E2_3785 -1.4 -5.5 Twin-arginine translocation protein TatB compare
Pf6N2E2_3696 -1.4 -1.0 hypothetical protein compare
Pf6N2E2_1179 -1.4 -2.1 hypothetical protein compare
Pf6N2E2_2002 -1.4 -2.6 hypothetical protein compare
Pf6N2E2_3644 -1.3 -5.9 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) compare
Pf6N2E2_5023 -1.3 -3.4 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_2496 -1.3 -1.6 FIG00956575: hypothetical protein compare
Pf6N2E2_1548 -1.3 -1.7 Lactoylglutathione lyase compare
Pf6N2E2_1797 -1.3 -1.6 Transcriptional regulator compare
Pf6N2E2_4579 -1.3 -0.8 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2124 -1.3 -1.8 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2080 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_1248 -1.3 -2.6 MutT/nudix family protein compare
Pf6N2E2_2919 -1.3 -1.1 FIG00955830: hypothetical protein compare
Pf6N2E2_51 -1.3 -5.8 hypothetical protein compare
Pf6N2E2_3055 -1.3 -1.8 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_2217 -1.2 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1812 -1.2 -2.1 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_58 -1.2 -1.5 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_1371 -1.2 -2.1 hypothetical protein compare
Pf6N2E2_4764 -1.2 -2.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4052 -1.2 -1.4 FIG00955481: hypothetical protein compare
Pf6N2E2_939 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_1641 -1.2 -3.1 Chemotaxis protein CheC -- inhibitor of MCP methylation compare
Pf6N2E2_160 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_3106 -1.2 -2.5 hypothetical protein compare
Pf6N2E2_1774 -1.2 -1.7 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2891 -1.2 -5.6 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_4918 -1.1 -1.9 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_4733 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_442 -1.1 -2.0 FIG00962345: hypothetical protein compare
Pf6N2E2_1778 -1.1 -1.7 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_1031 -1.1 -2.4 Alkanesulfonates transport system permease protein compare
Pf6N2E2_1617 -1.1 -1.1 COG2199: FOG: GGDEF domain compare
Pf6N2E2_84 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_658 -1.1 -5.2 sensor histidine kinase compare
Pf6N2E2_5024 -1.1 -1.6 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_40 -1.1 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_178 -1.1 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2675 -1.1 -0.5 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2561 -1.1 -1.7 FIG00955434: hypothetical protein compare
Pf6N2E2_4708 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_1735 -1.1 -1.4 PhnB protein compare
Pf6N2E2_5745 -1.1 -2.4 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Pf6N2E2_3477 -1.1 -0.7 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2893 -1.1 -4.1 hypothetical protein compare
Pf6N2E2_4276 -1.1 -3.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1435 -1.1 -1.3 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_5894 -1.1 -4.4 Putative threonine efflux protein compare
Pf6N2E2_1014 -1.1 -1.0 Nitrate/nitrite transporter compare
Pf6N2E2_2022 -1.0 -0.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_638 -1.0 -1.4 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_311 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_4476 -1.0 -2.9 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_5411 -1.0 -2.1 FIG00955494: hypothetical protein compare
Pf6N2E2_1957 -1.0 -2.1 putative inner membrane protein compare
Pf6N2E2_2588 -1.0 -1.5 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2018 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_1932 -1.0 -1.7 Transcriptional regulator, IclR family compare
Pf6N2E2_2007 -1.0 -2.4 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_4057 -1.0 -0.5 lipoprotein, putative compare
Pf6N2E2_16 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_5252 -1.0 -2.7 FIG00956396: hypothetical protein compare
Pf6N2E2_4394 -1.0 -1.6 Putrescine utilization regulator compare
Pf6N2E2_819 -1.0 -1.3 Response regulator compare
Pf6N2E2_375 -1.0 -2.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2013 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_3300 -1.0 -1.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_6067 -1.0 -2.7 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf6N2E2_4159 -1.0 -5.8 Cytochrome c4 compare
Pf6N2E2_1611 -1.0 -2.5 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_987 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_3008 -1.0 -2.7 FIG00954242: hypothetical protein compare
Pf6N2E2_2552 -1.0 -6.7 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5693 -1.0 -5.8 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_1113 -1.0 -0.8 Transcriptional regulator, TetR family compare
Pf6N2E2_726 -1.0 -1.9 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf6N2E2_1876 -1.0 -1.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_3569 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_3455 -1.0 -2.4 Integral membrane protein YfiB compare
Pf6N2E2_3727 -1.0 -1.5 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_3535 -1.0 -2.8 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_2708 -1.0 -2.3 Lactam utilization protein LamB compare
Pf6N2E2_3870 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_5207 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_1054 -0.9 -2.7 integrase, putative compare
Pf6N2E2_1652 -0.9 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_1819 -0.9 -2.0 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_2706 -0.9 -2.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_704 -0.9 -1.8 Cytochrome c551/c552 compare
Pf6N2E2_159 -0.9 -2.1 DNA damage resistance protein (from data) compare
Pf6N2E2_3634 -0.9 -1.4 Transporter compare
Pf6N2E2_5086 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_2103 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_37 -0.9 -1.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_4824 -0.9 -2.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_5571 -0.9 -0.6 hypothetical protein compare
Pf6N2E2_1352 -0.9 -1.2 Cation transport ATPase compare
Pf6N2E2_2869 -0.9 -0.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_1775 -0.9 -2.2 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_4417 -0.9 -2.9 Protein of unknown function DUF484 compare
Pf6N2E2_5640 -0.9 -0.9 FIG00955597: hypothetical protein compare
Pf6N2E2_6038 -0.9 -1.3 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment