Experiment set12IT087 for Pseudomonas fluorescens FW300-N2E2

Compare to:

No vitamins, timepoint 1

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_1246 +2.4 2.6 FIG00961372: hypothetical protein compare
Pf6N2E2_1032 +2.1 1.1 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_1236 +1.9 2.4 Transcriptional regulator, LysR family compare
Pf6N2E2_2693 +1.7 1.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4743 +1.7 1.9 hypothetical protein compare
Pf6N2E2_961 +1.6 1.8 FIG00954712: hypothetical protein compare
Pf6N2E2_693 +1.5 1.3 hypothetical protein compare
Pf6N2E2_6099 +1.5 1.8 tRNA-Glu-TTC compare
Pf6N2E2_1294 +1.4 2.1 Carbon starvation protein A compare
Pf6N2E2_2277 +1.4 1.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_4541 +1.4 1.9 hypothetical protein compare
Pf6N2E2_2578 +1.4 2.3 Flagellar biosynthesis protein FliR compare
Pf6N2E2_728 +1.4 2.8 Nitrate/nitrite transporter compare
Pf6N2E2_2397 +1.4 2.2 Two-component system response regulator QseB compare
Pf6N2E2_2106 +1.4 1.6 hypothetical protein compare
Pf6N2E2_1213 +1.3 2.8 hypothetical protein compare
Pf6N2E2_848 +1.2 2.9 hypothetical protein compare
Pf6N2E2_6087 +1.2 2.0 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_1490 +1.2 2.7 hypothetical protein compare
Pf6N2E2_1821 +1.2 1.2 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4359 +1.2 2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2640 +1.1 1.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_4459 +1.1 1.5 Transcriptional regulator, GntR family compare
Pf6N2E2_2625 +1.1 2.5 Flagellar P-ring protein FlgI compare
Pf6N2E2_1694 +1.1 1.4 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1396 +1.1 1.9 ABC transporter, ATP-binding protein compare
Pf6N2E2_1215 +1.1 1.7 probable membrane protein YPO2362 compare
Pf6N2E2_4624 +1.1 0.7 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_1445 +1.1 1.6 Glutathione S-transferase compare
Pf6N2E2_648 +1.1 1.8 General secretion pathway protein K compare
Pf6N2E2_2574 +1.1 2.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_3901 +1.1 1.9 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_4963 +1.1 1.6 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_2483 +1.1 2.6 Deoxyribonuclease TatD compare
Pf6N2E2_2592 +1.0 3.9 Flagellar motor switch protein FliG compare
Pf6N2E2_1607 +1.0 2.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_88 +1.0 1.1 hypothetical protein compare
Pf6N2E2_1683 +1.0 1.7 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_2964 +1.0 2.2 FIG006285: ICC-like protein phosphoesterase compare
Pf6N2E2_420 +1.0 1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5137 +1.0 2.0 FIG00956650: hypothetical protein compare
Pf6N2E2_1796 +1.0 2.1 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_6140 +1.0 0.6 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_358 +1.0 2.2 Haloacid dehalogenase, type II compare
Pf6N2E2_4640 +1.0 1.4 hypothetical protein compare
Pf6N2E2_1074 +1.0 1.9 FIG00953356: hypothetical protein compare
Pf6N2E2_5241 +1.0 1.2 Aminopeptidase N compare
Pf6N2E2_2962 +1.0 2.0 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_544 +0.9 1.6 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_893 +0.9 1.3 hypothetical protein compare
Pf6N2E2_1140 +0.9 1.9 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_4369 +0.9 1.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1452 +0.9 1.8 hypothetical protein compare
Pf6N2E2_1305 +0.9 1.5 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_2626 +0.9 6.1 Flagellar L-ring protein FlgH compare
Pf6N2E2_3338 +0.9 1.1 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_847 +0.9 1.6 Phosphoribosyl transferase domain protein compare
Pf6N2E2_1596 +0.9 0.8 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_2582 +0.9 2.6 Flagellar motor switch protein FliN compare
Pf6N2E2_4630 +0.9 2.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf6N2E2_1039 +0.9 2.0 Gluconolactonase compare
Pf6N2E2_1782 +0.9 1.4 STAS domain protein compare
Pf6N2E2_5816 +0.9 1.6 Smr domain protein compare
Pf6N2E2_451 +0.9 1.6 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_1442 +0.9 2.9 Transcriptional regulators of sugar metabolism compare
Pf6N2E2_1276 +0.9 2.6 FIG00958406: hypothetical protein compare
Pf6N2E2_660 +0.9 1.6 hypothetical protein compare
Pf6N2E2_3205 +0.9 2.2 Mobile element protein compare
Pf6N2E2_4025 +0.8 1.2 hypothetical protein compare
Pf6N2E2_1123 +0.8 2.2 Tol biopolymer transport system, TolR protein compare
Pf6N2E2_4494 +0.8 2.8 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_1470 +0.8 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_1818 +0.8 2.2 hypothetical protein compare
Pf6N2E2_1631 +0.8 2.8 SyrP-like protein compare
Pf6N2E2_962 +0.8 1.5 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_1870 +0.8 1.1 hypothetical protein compare
Pf6N2E2_3027 +0.8 0.7 Baseplate assembly protein V compare
Pf6N2E2_39 +0.8 3.1 FIG00857858: hypothetical protein compare
Pf6N2E2_5589 +0.8 3.7 Sodium-type flagellar protein motY precursor compare
Pf6N2E2_5898 +0.8 1.8 Integral membrane protein compare
Pf6N2E2_472 +0.8 2.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_5694 +0.8 3.4 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_1195 +0.8 1.6 hypothetical protein compare
Pf6N2E2_1734 +0.8 2.2 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf6N2E2_3499 +0.8 2.2 Permeases of the major facilitator superfamily compare
Pf6N2E2_2674 +0.8 1.0 FIG00953856: hypothetical protein compare
Pf6N2E2_568 +0.8 1.8 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) compare
Pf6N2E2_2144 +0.8 2.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_170 +0.8 1.1 lipoprotein, putative compare
Pf6N2E2_1824 +0.8 0.9 hypothetical protein compare
Pf6N2E2_3204 +0.8 1.5 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_1312 +0.8 0.9 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_2285 +0.8 1.1 FIG00954079: hypothetical protein compare
Pf6N2E2_3830 +0.8 2.0 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_377 +0.8 1.5 hypothetical protein compare
Pf6N2E2_5341 +0.8 2.4 Stringent starvation protein B compare
Pf6N2E2_2207 +0.8 1.6 cytochrome b(561) compare
Pf6N2E2_2871 +0.8 1.3 FIG00954271: hypothetical protein compare
Pf6N2E2_1989 +0.8 0.9 hypothetical protein compare
Pf6N2E2_2171 +0.8 2.3 Rhodanese-related sulfurtransferase compare
Pf6N2E2_813 +0.8 1.2 Response regulator compare
Pf6N2E2_5671 +0.8 1.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_6100 +0.8 0.6 tRNA-Val-TAC compare
Pf6N2E2_2252 +0.8 1.6 NreA-like protein compare
Pf6N2E2_1601 +0.8 2.3 DNA-binding response regulator, LuxR family compare
Pf6N2E2_2585 +0.7 4.6 Flagellar hook-length control protein FliK compare
Pf6N2E2_455 +0.7 3.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1813 +0.7 1.9 ABC-type oligopeptide transport system, ATPase component compare
Pf6N2E2_2081 +0.7 1.2 putative exported protein compare
Pf6N2E2_2904 +0.7 1.3 Hypothetical protein DUF454 compare
Pf6N2E2_1549 +0.7 2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_1671 +0.7 2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_2119 +0.7 1.8 hypothetical protein compare
Pf6N2E2_4181 +0.7 0.8 Organic hydroperoxide resistance protein compare
Pf6N2E2_827 +0.7 0.7 probable dioxygenase compare
Pf6N2E2_1523 +0.7 1.9 Universal stress protein family 5 compare
Pf6N2E2_1161 +0.7 1.9 FIG00961921: hypothetical protein compare
Pf6N2E2_1440 +0.7 1.5 Putative tRNA-m1A22 methylase compare
Pf6N2E2_613 +0.7 0.8 lipoprotein, putative compare
Pf6N2E2_5226 +0.7 1.0 FIG00955589: hypothetical protein compare
Pf6N2E2_4438 +0.7 2.2 hypothetical protein compare
Pf6N2E2_2366 +0.7 1.6 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Pf6N2E2_5464 +0.7 2.5 Cytochrome c551 peroxidase (EC 1.11.1.5) compare
Pf6N2E2_2593 +0.7 3.2 Flagellar M-ring protein FliF compare
Pf6N2E2_2594 +0.7 3.8 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_1806 +0.7 1.0 hypothetical protein compare
Pf6N2E2_737 +0.7 0.9 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_2069 +0.7 1.2 FIG00953703: hypothetical protein compare
Pf6N2E2_426 +0.7 2.2 Arsenate reductase (EC 1.20.4.1) compare
Pf6N2E2_2563 +0.7 5.0 FIG00953562: hypothetical protein compare
Pf6N2E2_689 +0.7 1.1 FIG00956189: hypothetical protein compare
Pf6N2E2_5730 +0.7 1.9 FIG00954480: hypothetical protein compare
Pf6N2E2_2003 +0.7 1.1 hypothetical protein compare
Pf6N2E2_5697 +0.7 5.4 Flagellar hook protein FlgE compare
Pf6N2E2_2590 +0.7 4.1 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_828 +0.7 1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2583 +0.7 3.0 Flagellar motor switch protein FliM compare
Pf6N2E2_142 +0.7 2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_193 +0.7 1.8 hypothetical protein compare
Pf6N2E2_1862 +0.7 1.8 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf6N2E2_2628 +0.7 2.4 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_312 +0.7 2.4 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_3875 +0.7 1.1 FIG00953324: hypothetical protein compare
Pf6N2E2_5874 +0.7 5.4 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins compare
Pf6N2E2_1844 +0.7 1.9 MaoC-related acyl dehydratase compare
Pf6N2E2_3171 +0.7 1.0 hypothetical protein compare
Pf6N2E2_69 +0.7 3.2 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_3982 +0.7 0.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_503 +0.7 1.8 sensor histidine kinase compare
Pf6N2E2_440 +0.7 2.1 FIG00954920: hypothetical protein compare
Pf6N2E2_3624 +0.7 3.1 Flagellar motor rotation protein MotB compare
Pf6N2E2_2469 +0.7 2.3 hypothetical protein compare
Pf6N2E2_3024 +0.7 1.1 Phage tail fibers compare
Pf6N2E2_2788 +0.7 1.0 Transcriptional regulator, AsnC family compare
Pf6N2E2_5261 +0.7 0.5 FIG00956983: hypothetical protein compare
Pf6N2E2_4148 +0.7 5.8 Glutamate-aspartate carrier protein compare
Pf6N2E2_1723 +0.7 1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_754 +0.7 1.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_1803 +0.7 1.5 Polysaccharide deacetylase compare
Pf6N2E2_1750 +0.7 1.9 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_4305 +0.7 0.7 FIG00959590: hypothetical protein compare
Pf6N2E2_2175 +0.6 1.9 Transcriptional regulator, RpiR family compare
Pf6N2E2_3033 +0.6 0.8 hypothetical protein compare
Pf6N2E2_6023 +0.6 2.4 Putative cytoplasmic protein compare
Pf6N2E2_2363 +0.6 1.8 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_180 +0.6 1.5 Transcriptional regulator, MerR family compare
Pf6N2E2_552 +0.6 0.8 Uncharacterized protein ImpF compare
Pf6N2E2_3770 +0.6 0.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3835 +0.6 1.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_561 +0.6 2.0 Uncharacterized protein ImpA compare
Pf6N2E2_5739 +0.6 0.8 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2576 +0.6 4.7 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_5599 +0.6 1.7 Electron transport complex protein RnfA compare
Pf6N2E2_1028 +0.6 1.4 Transcriptional regulator, LysR family compare
Pf6N2E2_3568 +0.6 1.0 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_2633 +0.6 1.1 Nitroreductase family protein compare
Pf6N2E2_5567 +0.6 1.2 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_304 +0.6 1.1 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_1564 +0.6 2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
Pf6N2E2_5499 +0.6 0.7 hypothetical protein compare
Pf6N2E2_2597 +0.6 4.1 Flagellar regulatory protein FleQ compare
Pf6N2E2_5843 +0.6 1.1 hypothetical protein compare
Pf6N2E2_200 +0.6 2.2 Possible glycosyltransferase compare
Pf6N2E2_4399 +0.6 1.8 GGDEF domain/EAL domain protein compare
Pf6N2E2_1582 +0.6 1.8 HlyD family secretion protein compare
Pf6N2E2_21 +0.6 1.9 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf6N2E2_2089 +0.6 1.1 Transcriptional regulator, AraC family compare
Pf6N2E2_349 +0.6 1.5 hypothetical protein compare
Pf6N2E2_4952 +0.6 2.8 Ser/Thr and Tyr protein phosphatase (dual specificity) compare
Pf6N2E2_5446 +0.6 2.2 iron-chelator utilization protein compare
Pf6N2E2_4744 +0.6 2.2 putative iron-regulated membrane protein compare
Pf6N2E2_4177 +0.6 2.2 hypothetical protein compare
Pf6N2E2_798 +0.6 1.1 Ku domain protein compare
Pf6N2E2_5595 +0.6 1.7 Electron transport complex protein RnfE compare
Pf6N2E2_341 +0.6 1.3 sensor histidine kinase compare
Pf6N2E2_425 +0.6 1.4 FIG00957304: hypothetical protein compare
Pf6N2E2_905 +0.6 1.5 FIG00962753: hypothetical protein compare
Pf6N2E2_2296 +0.6 1.2 FIG00954767: hypothetical protein compare
Pf6N2E2_1252 +0.6 2.5 Catalase (EC 1.11.1.6) compare
Pf6N2E2_4416 +0.6 0.6 Tyrosine recombinase XerC compare


Specific Phenotypes

For 1 genes in this experiment