Experiment set12IT086 for Pseudomonas fluorescens FW300-N2E2

Compare to:

With vitamins, timepoint 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -6.0 -4.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4279 -4.9 -8.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3932 -4.7 -4.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_50 -4.7 -6.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4049 -4.7 -7.7 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5177 -4.6 -4.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3248 -4.6 -3.1 Probable transmembrane protein compare
Pf6N2E2_3751 -4.5 -4.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3786 -4.5 -14.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_3783 -4.4 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_71 -4.4 -3.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4278 -4.4 -6.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4277 -4.3 -15.0 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3251 -4.3 -2.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2258 -4.2 -2.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3253 -4.2 -2.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2893 -4.2 -4.0 hypothetical protein compare
Pf6N2E2_5666 -4.2 -7.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4826 -4.1 -4.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4564 -4.0 -7.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4048 -4.0 -2.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_64 -3.9 -2.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3752 -3.9 -11.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2889 -3.9 -9.8 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_2890 -3.8 -9.9 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_2897 -3.8 -3.7 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_3842 -3.7 -2.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5150 -3.7 -2.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3630 -3.7 -2.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2896 -3.7 -4.2 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_3839 -3.6 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5338 -3.6 -28.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5299 -3.5 -4.8 Benzoate transport protein compare
Pf6N2E2_5258 -3.5 -7.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_5339 -3.5 -21.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3487 -3.5 -6.9 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2863 -3.4 -5.1 Gluconate permease compare
Pf6N2E2_5337 -3.4 -19.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2892 -3.4 -10.4 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_5728 -3.4 -3.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4597 -3.4 -2.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2895 -3.4 -5.1 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_3610 -3.4 -3.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_66 -3.3 -7.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2899 -3.3 -3.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4825 -3.3 -2.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2073 -3.2 -2.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3938 -3.2 -10.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3940 -3.2 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4596 -3.2 -2.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_77 -3.2 -2.2 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5667 -3.0 -7.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5894 -3.0 -7.5 Putative threonine efflux protein compare
Pf6N2E2_4476 -2.9 -4.3 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_3763 -2.9 -1.9 hypothetical protein compare
Pf6N2E2_2864 -2.9 -2.7 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_2885 -2.8 -1.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3841 -2.8 -1.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3170 -2.8 -9.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5316 -2.8 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_658 -2.8 -8.2 sensor histidine kinase compare
Pf6N2E2_5257 -2.7 -10.1 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_5175 -2.7 -1.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2891 -2.7 -8.5 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_70 -2.7 -3.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2217 -2.7 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3252 -2.6 -4.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4276 -2.6 -4.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4797 -2.6 -2.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4159 -2.5 -12.6 Cytochrome c4 compare
Pf6N2E2_5176 -2.5 -1.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_1652 -2.5 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2286 -2.5 -2.2 FIG00953287: hypothetical protein compare
Pf6N2E2_2074 -2.5 -1.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5899 -2.4 -5.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3696 -2.4 -1.3 hypothetical protein compare
Pf6N2E2_2518 -2.4 -3.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_63 -2.4 -4.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5014 -2.4 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_302 -2.4 -2.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2552 -2.4 -10.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4601 -2.3 -1.5 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5520 -2.2 -6.5 Sensory box histidine kinase compare
Pf6N2E2_2465 -2.2 -4.5 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3820 -2.2 -3.1 hypothetical protein compare
Pf6N2E2_3661 -2.1 -4.2 hypothetical protein compare
Pf6N2E2_2527 -2.1 -8.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4047 -2.1 -1.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_939 -2.1 -2.2 hypothetical protein compare
Pf6N2E2_746 -2.0 -2.1 FIG00958097: hypothetical protein compare
Pf6N2E2_2508 -2.0 -4.1 hypothetical protein compare
Pf6N2E2_5111 -2.0 -2.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_5676 -1.9 -3.6 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_2706 -1.9 -3.3 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4351 -1.9 -9.0 Predicted signal transduction protein compare
Pf6N2E2_37 -1.9 -1.7 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3826 -1.9 -3.4 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5494 -1.9 -3.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_229 -1.9 -3.3 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_3300 -1.8 -2.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2707 -1.8 -3.0 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_3869 -1.8 -7.8 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_2827 -1.8 -2.0 hypothetical protein compare
Pf6N2E2_3785 -1.8 -4.5 Twin-arginine translocation protein TatB compare
Pf6N2E2_2218 -1.8 -2.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2681 -1.8 -1.1 3-phosphoglycerate kinase compare
Pf6N2E2_4987 -1.8 -0.9 MaoC-like domain protein compare
Pf6N2E2_3521 -1.7 -7.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_4918 -1.7 -2.6 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_5155 -1.7 -3.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2507 -1.6 -5.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4678 -1.6 -0.8 hypothetical protein compare
Pf6N2E2_4072 -1.6 -5.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_1968 -1.6 -2.4 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_5705 -1.5 -5.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_51 -1.5 -4.5 hypothetical protein compare
Pf6N2E2_5722 -1.5 -5.6 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf6N2E2_6085 -1.5 -1.9 Aha1 domain superfamily compare
Pf6N2E2_3933 -1.4 -5.3 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_3659 -1.4 -4.7 Protein fixF compare
Pf6N2E2_2549 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_160 -1.4 -2.0 hypothetical protein compare
Pf6N2E2_2317 -1.3 -6.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4454 -1.3 -4.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2428 -1.3 -7.5 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_5679 -1.3 -3.9 hypothetical protein compare
Pf6N2E2_595 -1.3 -2.5 Arsenical resistance operon repressor compare
Pf6N2E2_4594 -1.3 -1.6 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_4579 -1.3 -0.8 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2986 -1.3 -2.8 Transcriptional regulator, LuxR family compare
Pf6N2E2_4075 -1.3 -6.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5006 -1.3 -2.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2708 -1.3 -2.9 Lactam utilization protein LamB compare
Pf6N2E2_2510 -1.3 -0.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_1617 -1.3 -1.2 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2318 -1.3 -11.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4817 -1.3 -8.8 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_3340 -1.3 -6.8 Fructose repressor FruR, LacI family compare
Pf6N2E2_4187 -1.2 -7.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4762 -1.2 -1.5 Biotin synthesis protein BioH compare
Pf6N2E2_5252 -1.2 -3.2 FIG00956396: hypothetical protein compare
Pf6N2E2_2186 -1.2 -3.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_4708 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_4071 -1.2 -3.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_928 -1.2 -1.7 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_3534 -1.2 -1.4 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3870 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_311 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_178 -1.2 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1444 -1.2 -2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_4818 -1.2 -3.8 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_1014 -1.2 -1.1 Nitrate/nitrite transporter compare
Pf6N2E2_3346 -1.2 -3.3 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2072 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_3537 -1.2 -1.9 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1098 -1.2 -1.9 Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein compare
Pf6N2E2_5331 -1.2 -3.2 ATPase, AFG1 family compare
Pf6N2E2_2588 -1.2 -1.5 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_3072 -1.1 -5.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_2103 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_4659 -1.1 -3.3 Lipoprotein, putative compare
Pf6N2E2_3264 -1.1 -5.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_6081 -1.1 -2.5 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_4464 -1.1 -0.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_1352 -1.1 -1.6 Cation transport ATPase compare
Pf6N2E2_5103 -1.1 -1.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_1932 -1.1 -1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_895 -1.1 -2.4 Transcriptional regulator, HxlR family compare
Pf6N2E2_16 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_855 -1.1 -1.7 Transcriptional regulator, IclR family compare
Pf6N2E2_2320 -1.1 -6.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2080 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_2418 -1.1 -1.1 DNA-binding response regulator, LuxR family compare
Pf6N2E2_5546 -1.1 -3.9 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_2340 -1.1 -2.1 Transcriptional regulator, GntR family compare
Pf6N2E2_4057 -1.1 -0.5 lipoprotein, putative compare
Pf6N2E2_600 -1.1 -0.9 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_2253 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_4353 -1.1 -2.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2753 -1.1 -0.9 HtrA protease/chaperone protein compare
Pf6N2E2_3017 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_2129 -1.0 -2.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_159 -1.0 -2.3 DNA damage resistance protein (from data) compare
Pf6N2E2_2022 -1.0 -1.0 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_1248 -1.0 -2.3 MutT/nudix family protein compare
Pf6N2E2_2938 -1.0 -2.1 Outer membrane lipoprotein compare
Pf6N2E2_601 -1.0 -2.0 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_521 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_4052 -1.0 -1.3 FIG00955481: hypothetical protein compare
Pf6N2E2_973 -1.0 -3.0 Single-stranded DNA-binding protein compare
Pf6N2E2_5665 -1.0 -4.3 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_2313 -1.0 -3.5 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4197 -1.0 -4.5 DNA recombination and repair protein RecF compare
Pf6N2E2_396 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_1774 -1.0 -1.6 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2391 -1.0 -5.0 FIG137360: hypothetical protein compare
Pf6N2E2_863 -1.0 -3.4 Transcriptional regulator, IclR family compare
Pf6N2E2_292 -1.0 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_3260 -1.0 -1.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3132 -1.0 -1.7 FIG00954548: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in vitamin experiments