Experiment set12IT085 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium malate (C) and Ammonium chloride (N); with MOPS; with PEG

200 most important genes:

  gene name fitness t score description  
PFLU_RS01605 -4.4 -10.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20540 -3.9 -12.8 phosphoribosylanthranilate isomerase compare
PFLU_RS01900 -3.7 -10.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28535 -3.7 -19.7 dihydroxy-acid dehydratase compare
PFLU_RS10765 -3.7 -14.1 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS28655 -3.7 -17.8 HAD family hydrolase compare
PFLU_RS20510 -3.7 -16.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20565 -3.7 -17.4 3-isopropylmalate dehydrogenase compare
PFLU_RS02490 -3.6 -14.0 phosphoserine phosphatase SerB compare
PFLU_RS20575 -3.6 -8.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS01620 -3.6 -11.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS29480 -3.6 -13.4 exodeoxyribonuclease III compare
PFLU_RS09835 -3.6 -15.0 LysR family transcriptional regulator compare
PFLU_RS00180 -3.6 -9.3 tryptophan synthase subunit beta compare
PFLU_RS25360 -3.6 -8.6 glutamate 5-kinase compare
PFLU_RS20580 -3.6 -15.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS00175 -3.6 -11.3 tryptophan synthase subunit alpha compare
PFLU_RS01610 -3.6 -14.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS27365 -3.6 -11.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28390 -3.5 -13.8 methionine biosynthesis protein MetW compare
PFLU_RS27370 -3.5 -15.5 anthranilate phosphoribosyltransferase compare
PFLU_RS25640 -3.5 -15.9 ketol-acid reductoisomerase compare
PFLU_RS04470 -3.4 -14.5 histidinol dehydrogenase compare
PFLU_RS27910 -3.4 -2.1 helix-turn-helix transcriptional regulator compare
PFLU_RS02590 -3.4 -11.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28385 -3.4 -16.5 homoserine O-acetyltransferase compare
PFLU_RS28165 -3.4 -14.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04465 -3.3 -11.8 ATP phosphoribosyltransferase compare
PFLU_RS18410 -3.2 -7.1 response regulator compare
PFLU_RS13540 -3.2 -6.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS08155 -3.1 -5.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS22740 -3.1 -3.0 phosphoadenylyl-sulfate reductase compare
PFLU_RS25760 -3.0 -14.7 glucose-6-phosphate isomerase compare
PFLU_RS24765 -2.9 -18.8 2-isopropylmalate synthase compare
PFLU_RS07645 -2.8 -3.8 hypothetical protein compare
PFLU_RS27475 -2.8 -8.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS01625 -2.8 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01895 -2.8 -7.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS09055 -2.7 -3.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS20515 -2.7 -3.2 amidophosphoribosyltransferase compare
PFLU_RS01320 -2.6 -10.8 phosphoenolpyruvate carboxykinase compare
PFLU_RS08160 -2.6 -10.8 sugar transferase compare
PFLU_RS08185 -2.6 -11.8 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS23380 -2.6 -2.9 HAD-IB family hydrolase compare
PFLU_RS25645 -2.6 -3.8 acetolactate synthase small subunit compare
PFLU_RS22595 -2.6 -4.2 OmpA family protein compare
PFLU_RS18505 -2.6 -10.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS05690 -2.5 -2.4 Grx4 family monothiol glutaredoxin compare
PFLU_RS15620 -2.4 -5.8 phenylacetaldoxime dehydratase family protein compare
PFLU_RS30510 -2.4 -6.7 glycosyltransferase family 4 protein compare
PFLU_RS14550 -2.4 -8.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS08650 -2.4 -2.3 heme exporter protein CcmB compare
PFLU_RS02760 -2.4 -10.0 N-acylglucosamine 2-epimerase compare
PFLU_RS25595 -2.4 -4.2 exodeoxyribonuclease V subunit gamma compare
PFLU_RS12975 -2.3 -5.1 DUF934 domain-containing protein compare
PFLU_RS02050 -2.3 -15.7 NAD(P)-binding protein compare
PFLU_RS25755 -2.3 -5.0 pantoate--beta-alanine ligase compare
PFLU_RS02625 -2.3 -12.0 ribonuclease R compare
PFLU_RS12980 -2.3 -9.4 nitrite/sulfite reductase compare
PFLU_RS08125 -2.2 -4.1 integration host factor subunit beta compare
PFLU_RS08180 -2.2 -6.9 ketoacyl-ACP synthase III compare
PFLU_RS28645 -2.2 -14.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS12145 -2.2 -2.9 nuclear transport factor 2 family protein compare
PFLU_RS01095 -2.1 -4.8 ribbon-helix-helix protein, CopG family compare
PFLU_RS23045 -2.1 -8.6 beta-ketoacyl-ACP synthase II compare
PFLU_RS08165 -2.1 -2.8 acyl carrier protein compare
PFLU_RS30530 -2.1 -9.1 acetyltransferase compare
PFLU_RS22105 -2.1 -4.1 cysteine synthase CysM compare
PFLU_RS30525 -2.0 -11.5 SDR family oxidoreductase compare
PFLU_RS08665 -2.0 -3.3 cytochrome c maturation protein CcmE compare
PFLU_RS08655 -2.0 -2.3 heme ABC transporter permease compare
PFLU_RS29780 -2.0 -8.2 acyl-CoA thioesterase compare
PFLU_RS27685 -2.0 -13.1 malate synthase G compare
PFLU_RS08670 -2.0 -4.7 heme lyase CcmF/NrfE family subunit compare
PFLU_RS29095 -1.9 -16.4 polyphosphate kinase 1 compare
PFLU_RS23510 -1.9 -13.1 5-oxoprolinase subunit PxpA compare
PFLU_RS06310 -1.9 -7.5 sigma E protease regulator RseP compare
PFLU_RS02355 -1.8 -5.6 GNAT family N-acetyltransferase compare
PFLU_RS04070 -1.8 -3.6 peptide chain release factor 3 compare
PFLU_RS20290 -1.8 -2.6 integration host factor subunit alpha compare
PFLU_RS00065 -1.8 -7.6 lysophospholipid acyltransferase compare
PFLU_RS26735 -1.8 -8.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS08190 -1.8 -13.1 polysaccharide biosynthesis protein compare
PFLU_RS09865 -1.8 -10.5 allantoin permease compare
PFLU_RS22395 -1.8 -5.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS02350 -1.7 -6.9 carbamoyltransferase compare
PFLU_RS07230 -1.7 -9.5 RNA polymerase sigma factor RpoE compare
PFLU_RS28695 -1.7 -3.7 phosphoglycerate dehydrogenase compare
PFLU_RS04165 -1.7 -7.1 cell division protein ZapE compare
PFLU_RS30215 -1.7 -7.8 KTSC domain-containing protein compare
PFLU_RS24555 -1.7 -4.5 thioredoxin fold domain-containing protein compare
PFLU_RS07725 -1.7 -5.0 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS23390 -1.7 -2.9 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS14670 -1.6 -3.9 GNAT family N-acetyltransferase compare
PFLU_RS26770 -1.6 -10.5 DedA family protein compare
PFLU_RS08135 -1.6 -6.0 glycosyltransferase compare
PFLU_RS19170 -1.6 -4.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS08675 -1.6 -2.8 DsbE family thiol:disulfide interchange protein compare
PFLU_RS08065 -1.6 -7.8 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS02790 -1.6 -1.7 TetR family transcriptional regulator compare
PFLU_RS29515 -1.6 -10.2 RidA family protein compare
PFLU_RS02275 -1.6 -3.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS02565 -1.6 -6.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS21495 -1.5 -3.7 TlpA family protein disulfide reductase compare
PFLU_RS25715 -1.5 -8.4 RNA polymerase-binding protein DksA compare
PFLU_RS23115 -1.5 -10.8 dicarboxylate/amino acid:cation symporter compare
PFLU_RS14380 -1.5 -4.6 DUF2388 domain-containing protein compare
PFLU_RS13010 -1.5 -4.4 Fe-S biogenesis protein NfuA compare
PFLU_RS03970 -1.5 -7.5 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS08410 -1.4 -5.7 HTH-type transcriptional regulator CysB compare
PFLU_RS28905 -1.4 -8.2 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS18055 -1.4 -1.8 hydrolase compare
PFLU_RS24025 -1.4 -8.4 quinolinate synthase NadA compare
PFLU_RS21205 -1.4 -9.1 N-acetylglutaminylglutamine synthetase compare
PFLU_RS13750 -1.4 -2.4 hypothetical protein compare
PFLU_RS28310 -1.4 -2.0 response regulator compare
PFLU_RS25585 -1.4 -3.1 exodeoxyribonuclease V subunit alpha compare
PFLU_RS30520 -1.4 -6.3 ketoacyl-ACP synthase III compare
PFLU_RS16435 -1.4 -8.9 glycogen debranching protein GlgX compare
PFLU_RS15410 -1.4 -2.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS16410 -1.3 -10.6 glycogen synthase GlgA compare
PFLU_RS07665 -1.3 -2.5 type I DNA topoisomerase compare
PFLU_RS18530 -1.3 -4.2 DNA translocase FtsK compare
PFLU_RS21425 -1.3 -2.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS02045 -1.3 -11.5 glutamate synthase large subunit compare
PFLU_RS18595 -1.3 -3.6 cupin domain-containing protein compare
PFLU_RS31830 -1.3 -1.9 hypothetical protein compare
PFLU_RS30505 -1.3 -5.1 hypothetical protein compare
PFLU_RS21240 -1.3 -2.0 hypothetical protein compare
PFLU_RS22470 -1.3 -2.6 hypothetical protein compare
PFLU_RS24125 -1.2 -5.0 cold-shock protein compare
PFLU_RS01880 -1.2 -5.8 twin-arginine translocase subunit TatC compare
PFLU_RS04140 -1.2 -2.9 response regulator transcription factor compare
PFLU_RS08505 -1.2 -4.5 protease HtpX compare
PFLU_RS02370 -1.2 -6.9 glycosyltransferase compare
PFLU_RS16415 -1.2 -8.6 malto-oligosyltrehalose trehalohydrolase compare
PFLU_RS21200 -1.2 -7.5 N-acetylglutaminylglutamine amidotransferase compare
PFLU_RS00440 -1.2 -9.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS01400 -1.2 -7.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02360 -1.2 -7.5 PIG-L family deacetylase compare
PFLU_RS25750 -1.2 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS23100 -1.2 -4.0 ribonuclease E compare
PFLU_RS28320 -1.2 -3.4 glutathione synthase compare
PFLU_RS14665 -1.2 -5.9 helix-turn-helix transcriptional regulator compare
PFLU_RS21825 -1.2 -7.3 ketoacyl-ACP synthase III compare
PFLU_RS24720 -1.2 -5.9 trehalose operon repressor compare
PFLU_RS19165 -1.2 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS08145 -1.1 -4.9 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS28180 -1.1 -6.2 DEAD/DEAH box helicase compare
PFLU_RS04345 -1.1 -4.6 ribosome-associated protein compare
PFLU_RS00415 -1.1 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS19015 -1.1 -5.5 anti-sigma factor compare
PFLU_RS04330 -1.1 -9.0 TIGR02099 family protein compare
PFLU_RS04475 -1.1 -7.1 histidinol-phosphate transaminase compare
PFLU_RS26595 -1.1 -2.8 lipoprotein compare
PFLU_RS01885 -1.1 -3.9 Sec-independent protein translocase subunit TatB compare
PFLU_RS10405 -1.1 -1.7 helix-turn-helix transcriptional regulator compare
PFLU_RS01645 -1.1 -7.3 S41 family peptidase compare
PFLU_RS02455 -1.1 -2.3 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS13485 -1.1 -7.9 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS27380 -1.1 -7.4 anthranilate synthase component I compare
PFLU_RS02580 -1.1 -7.4 FtsH protease activity modulator HflK compare
PFLU_RS31440 -1.1 -1.5 hypothetical protein compare
PFLU_RS25875 -1.1 -3.6 transcription elongation factor GreA compare
PFLU_RS09500 -1.1 -1.7 hypothetical protein compare
PFLU_RS27465 -1.0 -3.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS25815 -1.0 -1.5 transcription termination/antitermination protein NusA compare
PFLU_RS13045 -1.0 -4.4 AAA domain-containing protein compare
PFLU_RS23065 -1.0 -6.0 phosphate acyltransferase PlsX compare
PFLU_RS25790 -1.0 -4.0 polyribonucleotide nucleotidyltransferase compare
PFLU_RS14820 -1.0 -3.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS01615 -1.0 -3.2 DUF2164 domain-containing protein compare
PFLU_RS20660 -1.0 -6.0 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS09190 -1.0 -2.3 hypothetical protein compare
PFLU_RS05655 -1.0 -3.1 DeoR/GlpR family transcriptional regulator compare
PFLU_RS27305 -0.9 -5.0 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS14545 -0.9 -2.3 hypothetical protein compare
PFLU_RS16425 -0.9 -6.7 malto-oligosyltrehalose synthase compare
PFLU_RS28470 -0.9 -3.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS13475 -0.9 -6.5 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS27440 -0.9 -4.8 nucleotidyltransferase family protein compare
PFLU_RS06855 -0.9 -2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS05250 -0.9 -3.0 elongation factor 4 compare
PFLU_RS09845 -0.9 -1.9 biotin carboxyl carrier domain-containing protein compare
PFLU_RS09840 -0.9 -4.1 5-oxoprolinase subunit PxpA compare
PFLU_RS14810 -0.9 -1.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS13665 -0.9 -1.0 MarR family transcriptional regulator compare
PFLU_RS02645 -0.9 -4.4 hypothetical protein compare
PFLU_RS19375 -0.9 -5.6 branched-chain amino acid aminotransferase compare
PFLU_RS21260 -0.9 -4.1 DUF3509 domain-containing protein compare
PFLU_RS31475 -0.9 -2.0 hypothetical protein compare
PFLU_RS22370 -0.9 -5.6 cadmium-translocating P-type ATPase compare
PFLU_RS02975 -0.9 -5.2 precorrin-3B synthase compare
PFLU_RS02365 -0.9 -6.0 glycosyltransferase compare
PFLU_RS07695 -0.9 -2.5 beta-N-acetylhexosaminidase compare
PFLU_RS12915 -0.8 -2.1 methyltransferase domain-containing protein compare
PFLU_RS01585 -0.8 -4.1 oxidative damage protection protein compare
PFLU_RS04195 -0.8 -3.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS29505 -0.8 -3.1 DNA-directed RNA polymerase subunit omega compare
PFLU_RS26535 -0.8 -4.6 thiamine phosphate synthase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium malate in Pseudomonas fluorescens SBW25-INTG

For stress Sodium malate across organisms