Experiment set12IT070 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and Ammonium chloride (N); with MOPS; with PEG

200 most important genes:

  gene name fitness t score description  
PFLU_RS14550 -4.5 -8.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28390 -4.5 -12.2 methionine biosynthesis protein MetW compare
PFLU_RS27370 -4.4 -12.8 anthranilate phosphoribosyltransferase compare
PFLU_RS28385 -4.4 -15.4 homoserine O-acetyltransferase compare
PFLU_RS20540 -4.4 -11.3 phosphoribosylanthranilate isomerase compare
PFLU_RS01625 -4.3 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS07755 -4.2 -7.6 heavy metal sensor histidine kinase compare
PFLU_RS20580 -4.2 -14.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS02590 -4.2 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS04465 -4.2 -10.0 ATP phosphoribosyltransferase compare
PFLU_RS00175 -4.1 -9.2 tryptophan synthase subunit alpha compare
PFLU_RS01900 -4.1 -9.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS20510 -4.0 -15.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20565 -4.0 -17.0 3-isopropylmalate dehydrogenase compare
PFLU_RS27365 -4.0 -10.8 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28535 -4.0 -18.7 dihydroxy-acid dehydratase compare
PFLU_RS04470 -3.9 -13.1 histidinol dehydrogenase compare
PFLU_RS28695 -3.8 -9.6 phosphoglycerate dehydrogenase compare
PFLU_RS09835 -3.7 -15.2 LysR family transcriptional regulator compare
PFLU_RS01605 -3.6 -10.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20575 -3.6 -8.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS00180 -3.6 -8.6 tryptophan synthase subunit beta compare
PFLU_RS01620 -3.6 -10.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28165 -3.5 -13.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS09845 -3.5 -4.1 biotin carboxyl carrier domain-containing protein compare
PFLU_RS03970 -3.5 -11.7 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS22075 -3.4 -12.4 DUF3108 domain-containing protein compare
PFLU_RS29780 -3.3 -9.0 acyl-CoA thioesterase compare
PFLU_RS24025 -3.2 -13.4 quinolinate synthase NadA compare
PFLU_RS24765 -3.2 -20.6 2-isopropylmalate synthase compare
PFLU_RS25755 -3.2 -3.8 pantoate--beta-alanine ligase compare
PFLU_RS08650 -3.1 -2.1 heme exporter protein CcmB compare
PFLU_RS25760 -3.0 -14.8 glucose-6-phosphate isomerase compare
PFLU_RS29480 -3.0 -13.0 exodeoxyribonuclease III compare
PFLU_RS01610 -3.0 -14.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01840 -3.0 -19.7 glucans biosynthesis glucosyltransferase MdoH compare
PFLU_RS25640 -3.0 -15.1 ketol-acid reductoisomerase compare
PFLU_RS12975 -2.9 -5.5 DUF934 domain-containing protein compare
PFLU_RS01645 -2.9 -13.0 S41 family peptidase compare
PFLU_RS13540 -2.9 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS09055 -2.8 -3.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS08660 -2.8 -2.7 heme exporter protein CcmD compare
PFLU_RS14665 -2.8 -8.9 helix-turn-helix transcriptional regulator compare
PFLU_RS12980 -2.8 -10.6 nitrite/sulfite reductase compare
PFLU_RS20515 -2.8 -2.7 amidophosphoribosyltransferase compare
PFLU_RS25715 -2.8 -10.4 RNA polymerase-binding protein DksA compare
PFLU_RS28965 -2.8 -11.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS18530 -2.7 -5.4 DNA translocase FtsK compare
PFLU_RS10765 -2.7 -12.3 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS08670 -2.7 -3.2 heme lyase CcmF/NrfE family subunit compare
PFLU_RS25585 -2.7 -3.6 exodeoxyribonuclease V subunit alpha compare
PFLU_RS28545 -2.6 -8.2 FecR family protein compare
PFLU_RS25595 -2.6 -4.2 exodeoxyribonuclease V subunit gamma compare
PFLU_RS02365 -2.5 -12.9 glycosyltransferase compare
PFLU_RS02490 -2.5 -12.8 phosphoserine phosphatase SerB compare
PFLU_RS02370 -2.4 -11.4 glycosyltransferase compare
PFLU_RS01835 -2.4 -14.6 glucan biosynthesis protein G compare
PFLU_RS18505 -2.4 -11.1 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS08160 -2.4 -10.3 sugar transferase compare
PFLU_RS02565 -2.4 -7.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS08655 -2.4 -1.6 heme ABC transporter permease compare
PFLU_RS08185 -2.4 -11.8 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS22105 -2.4 -3.9 cysteine synthase CysM compare
PFLU_RS19015 -2.4 -10.3 anti-sigma factor compare
PFLU_RS09865 -2.4 -12.1 allantoin permease compare
PFLU_RS08665 -2.4 -3.2 cytochrome c maturation protein CcmE compare
PFLU_RS15620 -2.4 -6.9 phenylacetaldoxime dehydratase family protein compare
PFLU_RS13010 -2.3 -5.8 Fe-S biogenesis protein NfuA compare
PFLU_RS08165 -2.3 -2.7 acyl carrier protein compare
PFLU_RS07665 -2.3 -3.1 type I DNA topoisomerase compare
PFLU_RS08675 -2.2 -3.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS15410 -2.2 -3.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS24330 -2.2 -9.0 phosphogluconate dehydratase compare
PFLU_RS21495 -2.2 -5.0 TlpA family protein disulfide reductase compare
PFLU_RS14670 -2.2 -3.6 GNAT family N-acetyltransferase compare
PFLU_RS23380 -2.2 -3.8 HAD-IB family hydrolase compare
PFLU_RS21665 -2.2 -7.6 MinD/ParA family protein compare
PFLU_RS05690 -2.1 -2.5 Grx4 family monothiol glutaredoxin compare
PFLU_RS01895 -2.1 -6.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS27475 -2.1 -8.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS22595 -2.0 -3.8 OmpA family protein compare
PFLU_RS08190 -2.0 -14.3 polysaccharide biosynthesis protein compare
PFLU_RS08410 -2.0 -8.2 HTH-type transcriptional regulator CysB compare
PFLU_RS07245 -2.0 -9.4 DegQ family serine endoprotease compare
PFLU_RS25750 -2.0 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS20290 -2.0 -2.9 integration host factor subunit alpha compare
PFLU_RS30530 -2.0 -8.8 acetyltransferase compare
PFLU_RS30510 -1.9 -6.2 glycosyltransferase family 4 protein compare
PFLU_RS02625 -1.9 -10.9 ribonuclease R compare
PFLU_RS12445 -1.9 -11.6 TonB-dependent siderophore receptor compare
PFLU_RS18410 -1.9 -5.8 response regulator compare
PFLU_RS04435 -1.9 -7.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS19165 -1.9 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS23510 -1.9 -12.4 5-oxoprolinase subunit PxpA compare
PFLU_RS07765 -1.9 -8.9 cupredoxin family protein compare
PFLU_RS02355 -1.8 -5.2 GNAT family N-acetyltransferase compare
PFLU_RS30520 -1.8 -7.8 ketoacyl-ACP synthase III compare
PFLU_RS25360 -1.8 -6.3 glutamate 5-kinase compare
PFLU_RS04070 -1.8 -3.5 peptide chain release factor 3 compare
PFLU_RS30525 -1.8 -10.6 SDR family oxidoreductase compare
PFLU_RS25645 -1.7 -3.0 acetolactate synthase small subunit compare
PFLU_RS13580 -1.7 -4.1 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS24590 -1.7 -3.5 cytochrome c assembly protein compare
PFLU_RS24090 -1.7 -4.9 Holliday junction branch migration protein RuvA compare
PFLU_RS08180 -1.7 -6.4 ketoacyl-ACP synthase III compare
PFLU_RS30505 -1.7 -6.1 hypothetical protein compare
PFLU_RS25875 -1.7 -4.6 transcription elongation factor GreA compare
PFLU_RS01955 -1.7 -7.0 DUF971 domain-containing protein compare
PFLU_RS24375 -1.6 -9.1 c-type cytochrome compare
PFLU_RS24555 -1.6 -4.0 thioredoxin fold domain-containing protein compare
PFLU_RS28325 -1.6 -6.6 energy transducer TonB compare
PFLU_RS08155 -1.6 -4.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS02585 -1.6 -6.6 protease modulator HflC compare
PFLU_RS00065 -1.6 -7.0 lysophospholipid acyltransferase compare
PFLU_RS21425 -1.6 -2.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS22095 -1.6 -12.0 GTP diphosphokinase compare
PFLU_RS04430 -1.5 -7.6 ATP-binding cassette domain-containing protein compare
PFLU_RS23820 -1.5 -9.5 peptidase compare
PFLU_RS18395 -1.5 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS02000 -1.5 -13.3 penicillin-binding protein 1A compare
PFLU_RS04445 -1.5 -6.2 ABC transporter substrate-binding protein compare
PFLU_RS23590 -1.5 -2.2 gluconokinase compare
PFLU_RS31830 -1.5 -2.0 hypothetical protein compare
PFLU_RS03645 -1.5 -9.4 tetratricopeptide repeat protein compare
PFLU_RS01910 -1.5 -2.4 sterol-binding protein compare
PFLU_RS13295 -1.5 -6.3 HAMP domain-containing protein compare
PFLU_RS24095 -1.5 -3.1 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS25800 -1.5 -7.3 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS06320 -1.4 -3.1 OmpH family outer membrane protein compare
PFLU_RS14805 -1.4 -2.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS19420 -1.4 -5.0 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS04370 -1.4 -8.8 superoxide dismutase compare
PFLU_RS01390 -1.4 -6.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS02350 -1.4 -6.3 carbamoyltransferase compare
PFLU_RS02275 -1.4 -2.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS01095 -1.4 -3.6 ribbon-helix-helix protein, CopG family compare
PFLU_RS08105 -1.4 -5.8 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS07785 -1.4 -8.4 VacJ family lipoprotein compare
PFLU_RS14820 -1.4 -5.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS18885 -1.4 -2.5 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS21925 -1.4 -4.2 YecA family protein compare
PFLU_RS04440 -1.3 -7.5 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS19170 -1.3 -3.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS23920 -1.3 -2.6 septation protein A compare
PFLU_RS23585 -1.3 -6.0 GntP family permease compare
PFLU_RS26770 -1.3 -8.5 DedA family protein compare
PFLU_RS24085 -1.3 -4.3 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS28615 -1.3 -8.2 heavy metal translocating P-type ATPase compare
PFLU_RS28655 -1.3 -9.5 HAD family hydrolase compare
PFLU_RS03240 -1.3 -9.4 copper-translocating P-type ATPase compare
PFLU_RS07225 -1.3 -9.6 L-aspartate oxidase compare
PFLU_RS30165 -1.3 -6.5 ParA family protein compare
PFLU_RS28645 -1.3 -8.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22740 -1.3 -4.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS08145 -1.3 -6.4 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS09005 -1.3 -9.4 molecular chaperone HtpG compare
PFLU_RS04650 -1.2 -9.4 ABC transporter substrate-binding protein compare
PFLU_RS26595 -1.2 -2.9 lipoprotein compare
PFLU_RS14380 -1.2 -4.4 DUF2388 domain-containing protein compare
PFLU_RS16120 -1.2 -3.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS19550 -1.2 -1.1 ABC transporter ATP-binding protein compare
PFLU_RS08135 -1.2 -4.2 glycosyltransferase compare
PFLU_RS26735 -1.2 -5.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS15610 -1.2 -4.7 helix-turn-helix transcriptional regulator compare
PFLU_RS07235 -1.2 -3.8 sigma factor AlgU negative regulatory protein compare
PFLU_RS27650 -1.2 -8.4 biotin synthase BioB compare
PFLU_RS02775 -1.2 -1.7 urease accessory protein UreF compare
PFLU_RS29275 -1.1 -4.8 DUF484 family protein compare
PFLU_RS07805 -1.1 -9.1 transaldolase compare
PFLU_RS27690 -1.1 -2.4 response regulator compare
PFLU_RS01285 -1.1 -1.9 HAMP domain-containing protein compare
PFLU_RS12450 -1.1 -7.5 cyclic peptide export ABC transporter compare
PFLU_RS02360 -1.1 -6.8 PIG-L family deacetylase compare
PFLU_RS14320 -1.1 -2.0 DUF2946 domain-containing protein compare
PFLU_RS28905 -1.1 -6.5 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS02580 -1.1 -7.3 FtsH protease activity modulator HflK compare
PFLU_RS27640 -1.1 -2.3 alpha/beta fold hydrolase compare
PFLU_RS08065 -1.1 -6.0 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS23100 -1.1 -3.8 ribonuclease E compare
PFLU_RS29095 -1.0 -9.4 polyphosphate kinase 1 compare
PFLU_RS06055 -1.0 -1.6 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS05280 -1.0 -6.9 multicopper oxidase family protein compare
PFLU_RS24125 -1.0 -4.0 cold-shock protein compare
PFLU_RS04330 -1.0 -8.0 TIGR02099 family protein compare
PFLU_RS20765 -1.0 -2.4 hypothetical protein compare
PFLU_RS29735 -1.0 -6.1 HlyC/CorC family transporter compare
PFLU_RS18910 -1.0 -2.9 MarR family transcriptional regulator compare
PFLU_RS09855 -1.0 -4.2 allophanate hydrolase subunit 1 compare
PFLU_RS28415 -1.0 -4.9 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
PFLU_RS31200 -1.0 -3.4 hypothetical protein compare
PFLU_RS17190 -1.0 -4.1 acetyl-CoA C-acetyltransferase compare
PFLU_RS00415 -1.0 -1.5 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS23390 -1.0 -1.8 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS05655 -1.0 -2.1 DeoR/GlpR family transcriptional regulator compare
PFLU_RS15755 -0.9 -1.6 type II secretion system protein M compare
PFLU_RS31755 -0.9 -1.7 hypothetical protein compare
PFLU_RS24720 -0.9 -4.4 trehalose operon repressor compare
PFLU_RS25740 -0.9 -4.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS24805 -0.9 -4.1 helix-turn-helix domain-containing protein compare
PFLU_RS04015 -0.9 -1.6 1-phosphofructokinase compare


Specific Phenotypes

For 10 genes in this experiment

For stress Sucrose in Pseudomonas fluorescens SBW25-INTG

For stress Sucrose across organisms