Experiment set12IT068 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and L-Glutamine (N); with MOPS; with PEG

200 most important genes:

  gene name fitness t score description  
PFLU_RS25585 -2.8 -3.7 exodeoxyribonuclease V subunit alpha compare
PFLU_RS23070 -2.6 -1.5 50S ribosomal protein L32 compare
PFLU_RS31530 -2.6 -1.7 transposase compare
PFLU_RS14805 -2.5 -2.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS09055 -2.3 -4.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS00180 -2.2 -9.1 tryptophan synthase subunit beta compare
PFLU_RS28165 -2.1 -12.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01625 -2.1 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28695 -2.1 -6.5 phosphoglycerate dehydrogenase compare
PFLU_RS27370 -2.1 -11.9 anthranilate phosphoribosyltransferase compare
PFLU_RS08165 -2.0 -2.7 acyl carrier protein compare
PFLU_RS20540 -2.0 -10.6 phosphoribosylanthranilate isomerase compare
PFLU_RS27365 -1.9 -7.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20515 -1.9 -4.4 amidophosphoribosyltransferase compare
PFLU_RS01610 -1.8 -11.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS00175 -1.8 -9.2 tryptophan synthase subunit alpha compare
PFLU_RS25755 -1.7 -4.2 pantoate--beta-alanine ligase compare
PFLU_RS18735 -1.7 -2.0 hypothetical protein compare
PFLU_RS30505 -1.6 -5.7 hypothetical protein compare
PFLU_RS02590 -1.6 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28390 -1.6 -7.8 methionine biosynthesis protein MetW compare
PFLU_RS15410 -1.6 -2.8 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS22105 -1.6 -3.7 cysteine synthase CysM compare
PFLU_RS04470 -1.6 -9.4 histidinol dehydrogenase compare
PFLU_RS04465 -1.6 -8.2 ATP phosphoribosyltransferase compare
PFLU_RS08155 -1.6 -4.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS25595 -1.6 -2.8 exodeoxyribonuclease V subunit gamma compare
PFLU_RS22595 -1.6 -3.2 OmpA family protein compare
PFLU_RS05690 -1.5 -2.2 Grx4 family monothiol glutaredoxin compare
PFLU_RS01620 -1.5 -8.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20565 -1.5 -10.3 3-isopropylmalate dehydrogenase compare
PFLU_RS28325 -1.5 -6.8 energy transducer TonB compare
PFLU_RS01605 -1.5 -7.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS30530 -1.5 -6.9 acetyltransferase compare
PFLU_RS24555 -1.5 -4.2 thioredoxin fold domain-containing protein compare
PFLU_RS30520 -1.5 -6.5 ketoacyl-ACP synthase III compare
PFLU_RS28385 -1.4 -9.4 homoserine O-acetyltransferase compare
PFLU_RS27475 -1.4 -7.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS20580 -1.4 -8.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS08125 -1.4 -2.5 integration host factor subunit beta compare
PFLU_RS02565 -1.4 -6.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS12715 -1.4 -2.0 fumarylacetoacetate hydrolase family protein compare
PFLU_RS02490 -1.4 -8.4 phosphoserine phosphatase SerB compare
PFLU_RS04070 -1.4 -3.2 peptide chain release factor 3 compare
PFLU_RS19910 -1.4 -2.0 hypothetical protein compare
PFLU_RS20510 -1.4 -8.3 O-succinylhomoserine sulfhydrylase compare
PFLU_RS13580 -1.3 -3.6 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS03970 -1.3 -7.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS18515 -1.3 -1.9 fluoride efflux transporter CrcB compare
PFLU_RS08185 -1.3 -7.2 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS21240 -1.3 -2.0 hypothetical protein compare
PFLU_RS01900 -1.3 -5.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS14670 -1.2 -2.8 GNAT family N-acetyltransferase compare
PFLU_RS11285 -1.2 -3.0 hypothetical protein compare
PFLU_RS30525 -1.2 -7.5 SDR family oxidoreductase compare
PFLU_RS05630 -1.2 -1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS09835 -1.2 -7.4 LysR family transcriptional regulator compare
PFLU_RS08180 -1.2 -4.4 ketoacyl-ACP synthase III compare
PFLU_RS07695 -1.2 -3.4 beta-N-acetylhexosaminidase compare
PFLU_RS13010 -1.2 -3.4 Fe-S biogenesis protein NfuA compare
PFLU_RS21215 -1.2 -1.8 YheU family protein compare
PFLU_RS07665 -1.1 -2.1 type I DNA topoisomerase compare
PFLU_RS06320 -1.1 -2.3 OmpH family outer membrane protein compare
PFLU_RS14810 -1.1 -2.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS21665 -1.1 -4.7 MinD/ParA family protein compare
PFLU_RS08190 -1.1 -8.4 polysaccharide biosynthesis protein compare
PFLU_RS12980 -1.1 -5.8 nitrite/sulfite reductase compare
PFLU_RS15990 -1.0 -2.0 SDR family oxidoreductase compare
PFLU_RS25715 -1.0 -6.2 RNA polymerase-binding protein DksA compare
PFLU_RS13825 -1.0 -1.6 hypothetical protein compare
PFLU_RS29480 -1.0 -6.6 exodeoxyribonuclease III compare
PFLU_RS02670 -1.0 -3.4 hypothetical protein compare
PFLU_RS24765 -1.0 -8.3 2-isopropylmalate synthase compare
PFLU_RS12800 -1.0 -0.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS08160 -1.0 -5.3 sugar transferase compare
PFLU_RS14450 -1.0 -2.1 AzlD domain-containing protein compare
PFLU_RS07755 -1.0 -4.5 heavy metal sensor histidine kinase compare
PFLU_RS22095 -1.0 -7.8 GTP diphosphokinase compare
PFLU_RS02350 -1.0 -4.5 carbamoyltransferase compare
PFLU_RS29780 -1.0 -4.7 acyl-CoA thioesterase compare
PFLU_RS30630 -1.0 -1.2 hypothetical protein compare
PFLU_RS24085 -1.0 -3.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS28270 -1.0 -2.4 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS05750 -1.0 -1.5 methionine--tRNA ligase compare
PFLU_RS21360 -0.9 -1.5 MarR family transcriptional regulator compare
PFLU_RS18505 -0.9 -5.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS23445 -0.9 -2.2 DUF1003 domain-containing protein compare
PFLU_RS02625 -0.9 -6.4 ribonuclease R compare
PFLU_RS12970 -0.9 -2.5 MerR family transcriptional regulator compare
PFLU_RS15615 -0.9 -3.6 helix-turn-helix domain-containing protein compare
PFLU_RS01390 -0.9 -4.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS31475 -0.9 -2.5 hypothetical protein compare
PFLU_RS13540 -0.9 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25865 -0.9 -2.7 YhbY family RNA-binding protein compare
PFLU_RS02370 -0.9 -5.4 glycosyltransferase compare
PFLU_RS14380 -0.9 -2.9 DUF2388 domain-containing protein compare
PFLU_RS14820 -0.9 -3.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS28895 -0.9 -1.5 DUF2388 domain-containing protein compare
PFLU_RS11680 -0.9 -2.4 G/U mismatch-specific DNA glycosylase compare
PFLU_RS13945 -0.9 -1.3 hypothetical protein compare
PFLU_RS09670 -0.9 -1.9 integrating conjugative element protein compare
PFLU_RS24025 -0.9 -5.8 quinolinate synthase NadA compare
PFLU_RS09865 -0.9 -5.5 allantoin permease compare
PFLU_RS28535 -0.9 -6.7 dihydroxy-acid dehydratase compare
PFLU_RS13350 -0.9 -0.8 ParD-like family protein compare
PFLU_RS31645 -0.9 -2.3 hypothetical protein compare
PFLU_RS02275 -0.9 -2.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS01955 -0.8 -4.0 DUF971 domain-containing protein compare
PFLU_RS01895 -0.8 -3.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS14550 -0.8 -3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS05020 -0.8 -1.2 DUF1120 domain-containing protein compare
PFLU_RS08670 -0.8 -2.8 heme lyase CcmF/NrfE family subunit compare
PFLU_RS21110 -0.8 -2.0 AAA family ATPase compare
PFLU_RS28545 -0.8 -4.7 FecR family protein compare
PFLU_RS12445 -0.8 -5.6 TonB-dependent siderophore receptor compare
PFLU_RS25760 -0.8 -5.5 glucose-6-phosphate isomerase compare
PFLU_RS30510 -0.8 -2.7 glycosyltransferase family 4 protein compare
PFLU_RS28655 -0.8 -6.1 HAD family hydrolase compare
PFLU_RS22520 -0.8 -2.0 GntR family transcriptional regulator compare
PFLU_RS02365 -0.8 -5.3 glycosyltransferase compare
PFLU_RS22075 -0.8 -4.5 DUF3108 domain-containing protein compare
PFLU_RS24095 -0.8 -2.0 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS11380 -0.8 -1.2 sarcosine oxidase subunit delta compare
PFLU_RS04435 -0.8 -4.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS14210 -0.8 -2.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS13370 -0.8 -0.6 DUF2790 domain-containing protein compare
PFLU_RS11560 -0.8 -1.7 aldolase compare
PFLU_RS19015 -0.8 -3.6 anti-sigma factor compare
PFLU_RS00310 -0.8 -1.6 twin transmembrane helix small protein compare
PFLU_RS27305 -0.8 -4.0 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS20575 -0.8 -2.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS08145 -0.8 -3.3 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS13975 -0.8 -1.2 hypothetical protein compare
PFLU_RS27440 -0.8 -3.9 nucleotidyltransferase family protein compare
PFLU_RS08135 -0.7 -3.2 glycosyltransferase compare
PFLU_RS10765 -0.7 -5.1 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS08065 -0.7 -3.8 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS11505 -0.7 -1.2 ABC transporter substrate-binding protein compare
PFLU_RS19160 -0.7 -5.1 endopeptidase La compare
PFLU_RS30485 -0.7 -1.5 hypothetical protein compare
PFLU_RS13180 -0.7 -2.2 hypothetical protein compare
PFLU_RS23045 -0.7 -3.3 beta-ketoacyl-ACP synthase II compare
PFLU_RS04945 -0.7 -1.9 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS23920 -0.7 -1.6 septation protein A compare
PFLU_RS19555 -0.7 -0.8 histidine phosphatase family protein compare
PFLU_RS14045 -0.7 -1.3 hypothetical protein compare
PFLU_RS12975 -0.7 -1.8 DUF934 domain-containing protein compare
PFLU_RS19420 -0.7 -2.6 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS15065 -0.7 -2.3 IclR family transcriptional regulator compare
PFLU_RS23065 -0.7 -4.3 phosphate acyltransferase PlsX compare
PFLU_RS18530 -0.7 -1.9 DNA translocase FtsK compare
PFLU_RS25955 -0.7 -1.5 hypothetical protein compare
PFLU_RS28905 -0.7 -4.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS21260 -0.7 -3.3 DUF3509 domain-containing protein compare
PFLU_RS17525 -0.7 -1.6 NUDIX domain-containing protein compare
PFLU_RS13575 -0.7 -3.0 DUF1289 domain-containing protein compare
PFLU_RS01965 -0.7 -1.3 ATP-dependent protease subunit HslV compare
PFLU_RS28320 -0.6 -2.1 glutathione synthase compare
PFLU_RS11450 -0.6 -3.2 formyltetrahydrofolate deformylase compare
PFLU_RS08530 -0.6 -2.6 MarR family transcriptional regulator compare
PFLU_RS05780 -0.6 -4.3 helix-turn-helix transcriptional regulator compare
PFLU_RS18885 -0.6 -1.2 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS10250 -0.6 -2.7 glycosyltransferase family 2 protein compare
PFLU_RS11705 -0.6 -2.0 TIM barrel protein compare
PFLU_RS26735 -0.6 -3.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS02165 -0.6 -2.7 beta-ketoacyl synthase chain length factor compare
PFLU_RS04445 -0.6 -3.0 ABC transporter substrate-binding protein compare
PFLU_RS07225 -0.6 -4.8 L-aspartate oxidase compare
PFLU_RS00065 -0.6 -3.6 lysophospholipid acyltransferase compare
PFLU_RS07215 -0.6 -2.7 hypothetical protein compare
PFLU_RS17695 -0.6 -2.3 hypothetical protein compare
PFLU_RS11015 -0.6 -2.5 UTRA domain-containing protein compare
PFLU_RS05910 -0.6 -1.1 response regulator transcription factor compare
PFLU_RS17580 -0.6 -1.3 repressor LexA compare
PFLU_RS28645 -0.6 -4.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS09840 -0.6 -3.5 5-oxoprolinase subunit PxpA compare
PFLU_RS31510 -0.6 -0.8 transcriptional regulator compare
PFLU_RS13610 -0.6 -1.7 ABC transporter ATP-binding protein compare
PFLU_RS15575 -0.6 -2.4 fumarylacetoacetate hydrolase family protein compare
PFLU_RS21425 -0.6 -1.4 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS29095 -0.6 -5.6 polyphosphate kinase 1 compare
PFLU_RS31445 -0.6 -1.6 colicin immunity protein compare
PFLU_RS28315 -0.6 -0.6 response regulator compare
PFLU_RS01660 -0.6 -1.8 rhodanese-like domain-containing protein compare
PFLU_RS19580 -0.6 -1.9 helix-turn-helix transcriptional regulator compare
PFLU_RS07785 -0.6 -3.8 VacJ family lipoprotein compare
PFLU_RS16120 -0.6 -1.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS13205 -0.6 -1.5 DUF883 family protein compare
PFLU_RS26770 -0.6 -4.4 DedA family protein compare
PFLU_RS18435 -0.6 -1.4 arsenate reductase (glutaredoxin) compare
PFLU_RS24590 -0.6 -1.4 cytochrome c assembly protein compare
PFLU_RS13050 -0.6 -2.8 VWA domain-containing protein compare
PFLU_RS04430 -0.6 -3.2 ATP-binding cassette domain-containing protein compare
PFLU_RS15755 -0.6 -1.0 type II secretion system protein M compare
PFLU_RS09005 -0.6 -4.5 molecular chaperone HtpG compare
PFLU_RS07600 -0.6 -2.0 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM compare
PFLU_RS01095 -0.6 -1.6 ribbon-helix-helix protein, CopG family compare
PFLU_RS13710 -0.6 -2.0 DUF1294 domain-containing protein compare
PFLU_RS03880 -0.6 -4.5 ATP-dependent chaperone ClpB compare
PFLU_RS24475 -0.6 -4.9 AmpG family muropeptide MFS transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in stress experiments

For stress Sucrose across organisms