Experiment set12IT062 for Cupriavidus basilensis FW507-4G11

Compare to:

Carbon source Phenylacetic acid 2.5 mM

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -7.7 -5.3 anthranilate phosphoribosyltransferase compare
RR42_RS14365 -6.9 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS01385 -6.7 -4.4 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14400 -6.6 -4.6 isopropylmalate isomerase compare
RR42_RS19005 -6.5 -10.0 3-dehydroquinate synthase compare
RR42_RS23730 -6.5 -4.5 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS15050 -6.4 -9.7 DNA polymerase I compare
RR42_RS05860 -5.4 -6.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS06485 -5.4 -9.5 chorismate synthase compare
RR42_RS16275 -5.2 -5.0 membrane protein compare
RR42_RS19010 -4.8 -11.6 shikimate kinase compare
RR42_RS17645 -4.8 -8.0 shikimate dehydrogenase compare
RR42_RS18310 -4.7 -3.2 indole-3-glycerol-phosphate synthase compare
RR42_RS18295 -4.5 -14.7 anthranilate synthase component I compare
RR42_RS04475 -4.5 -12.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16255 -4.4 -7.7 sulfate adenylyltransferase compare
RR42_RS17385 -4.4 -12.7 LysR family transcriptional regulator compare
RR42_RS16250 -4.2 -7.4 sulfate adenylyltransferase compare
RR42_RS16270 -4.2 -11.1 sulfite reductase compare
RR42_RS14385 -4.1 -5.4 3-isopropylmalate dehydrogenase compare
RR42_RS16245 -4.0 -6.1 uroporphyrin-III methyltransferase compare
RR42_RS18990 -4.0 -20.9 glutamate synthase compare
RR42_RS18300 -4.0 -4.6 anthranilate synthase subunit II compare
RR42_RS01845 -3.9 -3.1 glycerol-3-phosphate dehydrogenase compare
RR42_RS01795 -3.8 -15.2 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS23725 -3.8 -7.6 phenylacetate-CoA oxygenase conserved
RR42_RS01160 -3.8 -8.8 homoserine O-acetyltransferase compare
RR42_RS17720 -3.7 -3.1 sugar kinase compare
RR42_RS16280 -3.7 -9.8 transcriptional regulator compare
RR42_RS23745 -3.7 -4.9 phenylacetic acid degradation protein conserved
RR42_RS20775 -3.6 -1.4 hypothetical protein compare
RR42_RS14390 -3.6 -4.8 3-isopropylmalate dehydratase compare
RR42_RS02705 -3.6 -2.8 Holliday junction DNA helicase RuvA compare
RR42_RS16265 -3.5 -4.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS14360 -3.5 -2.7 tryptophan synthase subunit alpha compare
RR42_RS04460 -3.4 -6.7 chorismate mutase compare
RR42_RS01290 -3.1 -7.8 thiamine biosynthesis protein ThiC compare
RR42_RS01775 -3.0 -5.7 glutamate--cysteine ligase compare
RR42_RS04535 -3.0 -5.5 cysteine synthase compare
RR42_RS15015 -3.0 -1.6 exodeoxyribonuclease VII small subunit compare
RR42_RS16240 -2.9 -1.6 cobalamin biosynthesis protein CbiX compare
RR42_RS15055 -2.9 -6.8 hypothetical protein compare
RR42_RS23735 -2.9 -5.2 phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) (from data) conserved
RR42_RS16260 -2.8 -1.4 phosphoadenosine phosphosulfate reductase compare
RR42_RS07555 -2.8 -2.6 potassium transporter Kup compare
RR42_RS05990 -2.7 -6.7 aromatic amino acid aminotransferase compare
RR42_RS05420 -2.7 -5.5 membrane protein compare
RR42_RS18985 -2.7 -5.4 glutamate synthase compare
RR42_RS05760 -2.6 -8.3 3-hydroxyacyl-CoA dehydrogenase conserved
RR42_RS19085 -2.6 -2.8 cytochrome C biogenesis protein ResB compare
RR42_RS23750 -2.5 -8.8 aldehyde dehydrogenase conserved
RR42_RS14320 -2.4 -3.5 O-succinylhomoserine sulfhydrylase compare
RR42_RS21470 -2.4 -1.3 hypothetical protein compare
RR42_RS04470 -2.4 -4.8 prephenate dehydrogenase compare
RR42_RS07325 -2.3 -7.9 exodeoxyribonuclease III compare
RR42_RS12545 -2.2 -10.8 aminotransferase compare
RR42_RS00715 -2.2 -2.0 ferritin compare
RR42_RS03095 -2.1 -2.4 succinyl-CoA synthetase subunit beta compare
RR42_RS25785 -2.0 -3.9 TetR family transcriptional regulator compare
RR42_RS11795 -2.0 -4.0 PEP synthetase regulatory protein compare
RR42_RS35915 -2.0 -2.4 beta-ketoadipyl CoA thiolase compare
RR42_RS03080 -2.0 -2.5 recombinase RecA compare
RR42_RS21690 -1.9 -1.5 acetyltransferase compare
RR42_RS17180 -1.9 -6.6 hypothetical protein compare
RR42_RS05985 -1.9 -10.5 esterase compare
RR42_RS26590 -1.8 -1.8 hypothetical protein compare
RR42_RS33575 -1.8 -4.7 hypothetical protein compare
RR42_RS23755 -1.8 -7.1 phenylacetate--CoA ligase conserved
RR42_RS13800 -1.8 -6.1 formyltetrahydrofolate deformylase compare
RR42_RS19695 -1.8 -2.9 cytochrome C protein compare
RR42_RS17565 -1.8 -10.9 LysR family transcriptional regulator compare
RR42_RS21220 -1.8 -2.0 iron transporter FeoB compare
RR42_RS21505 -1.7 -2.0 hypothetical protein compare
RR42_RS23685 -1.7 -6.1 transcriptional regulator compare
RR42_RS06240 -1.7 -1.9 tryptophan--tRNA ligase compare
RR42_RS17390 -1.7 -5.3 ATP-dependent DNA helicase RecG compare
RR42_RS17555 -1.7 -1.7 hypothetical protein compare
RR42_RS18485 -1.7 -1.3 glutaredoxin compare
RR42_RS05905 -1.6 -3.1 hypothetical protein compare
RR42_RS33355 -1.6 -3.3 membrane protein compare
RR42_RS09590 -1.6 -2.2 hypothetical protein compare
RR42_RS18995 -1.6 -6.4 transposase compare
RR42_RS12590 -1.5 -1.3 50S ribosomal protein L9 compare
RR42_RS01785 -1.5 -2.9 PTS fructose transporter subunit IIA compare
RR42_RS02440 -1.5 -1.9 membrane protein compare
RR42_RS32710 -1.5 -2.0 hypothetical protein compare
RR42_RS21420 -1.5 -5.8 acyl-CoA dehydrogenase compare
RR42_RS15845 -1.5 -2.1 biotin transporter BioY compare
RR42_RS17060 -1.5 -8.9 histidine kinase compare
RR42_RS31505 -1.5 -2.0 hypothetical protein compare
RR42_RS18250 -1.5 -9.4 enoyl-CoA hydratase conserved
RR42_RS24040 -1.5 -3.5 hypothetical protein compare
RR42_RS09555 -1.5 -2.2 universal stress protein UspA compare
RR42_RS27625 -1.5 -2.4 TetR family transcriptional regulator compare
RR42_RS07385 -1.4 -1.3 Phasin (PHA-granule associated protein) compare
RR42_RS07130 -1.4 -1.7 hypothetical protein compare
RR42_RS01985 -1.4 -6.7 zinc protease compare
RR42_RS02500 -1.4 -1.6 TetR family transcriptional regulator compare
RR42_RS04895 -1.4 -9.2 serine/threonine protein phosphatase compare
RR42_RS14930 -1.3 -2.8 biopolymer transporter ExbD compare
RR42_RS01505 -1.3 -1.4 tRNA-Cys compare
RR42_RS07590 -1.3 -5.4 pseudouridine synthase compare
RR42_RS18020 -1.3 -3.2 ornithine acetyltransferase compare
RR42_RS07605 -1.3 -3.8 poly-beta-hydroxybutyrate polymerase compare
RR42_RS35220 -1.3 -1.0 peptide ABC transporter ATP-binding protein compare
RR42_RS01420 -1.3 -1.8 2', 3'-cyclic nucleotide 2'-phosphodiesterase compare
RR42_RS02810 -1.3 -1.1 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS24980 -1.2 -1.3 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS01980 -1.2 -8.8 peptidase M16 compare
RR42_RS14235 -1.2 -1.5 hypothetical protein compare
RR42_RS00830 -1.2 -3.8 cell division protein FtsN compare
RR42_RS21185 -1.2 -6.0 AMP nucleosidase compare
RR42_RS02420 -1.2 -0.9 SAM-dependent methyltransferase compare
RR42_RS14055 -1.2 -1.6 elongation factor 4 compare
RR42_RS04300 -1.2 -2.2 nitrogen regulatory protein P-II 1 compare
RR42_RS02785 -1.2 -3.3 dimethyladenosine transferase compare
RR42_RS17730 -1.2 -2.0 hypothetical protein compare
RR42_RS20375 -1.2 -3.4 transcriptional regulator compare
RR42_RS12580 -1.2 -2.1 phosphate transport regulator compare
RR42_RS24820 -1.1 -2.5 hypothetical protein compare
RR42_RS30765 -1.1 -1.2 tRNA-Arg compare
RR42_RS15640 -1.1 -1.1 hypothetical protein compare
RR42_RS16460 -1.1 -1.3 cupin compare
RR42_RS05485 -1.1 -1.3 polynucleotide phosphorylase/polyadenylase compare
RR42_RS17235 -1.1 -3.6 poly(A) polymerase compare
RR42_RS01195 -1.1 -3.0 excinuclease ATPase compare
RR42_RS01380 -1.1 -1.1 membrane protein compare
RR42_RS17635 -1.1 -3.1 magnesium transporter CorA compare
RR42_RS20205 -1.1 -2.0 chromosome partitioning protein compare
RR42_RS14965 -1.1 -2.7 hypothetical protein compare
RR42_RS12925 -1.1 -1.2 ATPase compare
RR42_RS21630 -1.1 -2.0 Asp/Glu racemase compare
RR42_RS01485 -1.1 -1.4 phosphonate transporter compare
RR42_RS30535 -1.1 -4.0 cobalt transporter compare
RR42_RS01045 -1.1 -1.8 Fur family transcriptional regulator compare
RR42_RS37330 -1.1 -4.6 1,4-D-glucanase compare
RR42_RS02045 -1.1 -6.6 GTPase compare
RR42_RS26875 -1.1 -1.3 LysR family transcriptional regulator compare
RR42_RS09375 -1.1 -1.0 taurine dioxygenase compare
RR42_RS10855 -1.0 -1.1 diguanylate phosphodiesterase compare
RR42_RS15420 -1.0 -2.4 hypothetical protein compare
RR42_RS21040 -1.0 -0.9 hypothetical protein compare
RR42_RS11280 -1.0 -1.5 phenylacetic acid degradation protein compare
RR42_RS01820 -1.0 -3.4 peptidase S41 compare
RR42_RS27520 -1.0 -1.9 hypothetical protein compare
RR42_RS23515 -1.0 -3.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS02060 -1.0 -6.2 nucleotide-binding protein compare
RR42_RS33180 -1.0 -3.8 hypothetical protein compare
RR42_RS01920 -1.0 -2.7 protoheme IX farnesyltransferase compare
RR42_RS34215 -1.0 -0.9 ferredoxin compare
RR42_RS18850 -1.0 -1.1 preprotein translocase subunit TatC compare
RR42_RS09060 -1.0 -1.6 glucose-6-phosphate isomerase compare
RR42_RS36845 -1.0 -2.9 hypothetical protein compare
RR42_RS27700 -1.0 -1.7 hypothetical protein compare
RR42_RS36290 -1.0 -1.9 ABC transporter substrate-binding protein compare
RR42_RS24690 -1.0 -1.0 hypothetical protein compare
RR42_RS20570 -1.0 -1.3 biopolymer transporter ExbD compare
RR42_RS07380 -1.0 -3.0 dihydrolipoamide dehydrogenase compare
RR42_RS09300 -1.0 -1.5 aromatic ring-opening dioxygenase LigB compare
RR42_RS29610 -1.0 -1.1 cytochrome C2 compare
RR42_RS14880 -1.0 -2.1 hypothetical protein compare
RR42_RS36130 -1.0 -4.6 phytanoyl-CoA dioxygenase compare
RR42_RS08865 -1.0 -1.8 hydroxylase compare
RR42_RS01915 -1.0 -3.0 cytochrome C oxidase subunit I compare
RR42_RS08860 -1.0 -1.9 radical SAM protein compare
RR42_RS02880 -0.9 -3.1 universal stress protein UspA compare
RR42_RS14595 -0.9 -4.5 2-aminoadipate aminotransferase compare
RR42_RS14625 -0.9 -2.2 formimidoylglutamase compare
RR42_RS34815 -0.9 -2.3 diguanylate cyclase compare
RR42_RS02315 -0.9 -4.8 threonine dehydratase compare
RR42_RS07615 -0.9 -0.9 3-ketoacyl-ACP reductase compare
RR42_RS20880 -0.9 -2.0 hypothetical protein compare
RR42_RS06020 -0.9 -0.8 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS17050 -0.9 -4.5 phosphoribosylglycinamide formyltransferase compare
RR42_RS34650 -0.9 -2.7 LacI family transcriptional regulator compare
RR42_RS36110 -0.9 -1.8 membrane protein compare
RR42_RS12240 -0.9 -1.2 hypothetical protein compare
RR42_RS12285 -0.9 -3.1 ABC transporter permease compare
RR42_RS34675 -0.9 -1.0 NADPH:quinone reductase compare
RR42_RS07365 -0.9 -2.1 pyruvate dehydrogenase compare
RR42_RS19090 -0.9 -0.9 cytochrome C compare
RR42_RS06325 -0.9 -1.1 serine O-acetyltransferase compare
RR42_RS20370 -0.9 -1.1 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS28775 -0.9 -3.7 hypothetical protein compare
RR42_RS17940 -0.9 -1.4 gamma-glutamyl kinase compare
RR42_RS32740 -0.9 -0.7 enoyl-CoA hydratase compare
RR42_RS04050 -0.9 -2.3 Crp/Fnr family transcriptional regulator compare
RR42_RS29315 -0.9 -4.7 AcrR family transcriptional regulator compare
RR42_RS21825 -0.9 -2.0 hypothetical protein compare
RR42_RS31920 -0.9 -1.0 acetyl-CoA acetyltransferase compare
RR42_RS08980 -0.9 -2.3 hypothetical protein compare
RR42_RS17805 -0.9 -0.7 hypothetical protein compare
RR42_RS08945 -0.8 -0.9 hypothetical protein compare
RR42_RS13305 -0.8 -1.0 hypothetical protein compare
RR42_RS08340 -0.8 -1.3 phage tail protein compare
RR42_RS22490 -0.8 -2.9 IclR family transcriptional regulator compare
RR42_RS17560 -0.8 -4.1 Fur family transcriptional regulator compare
RR42_RS32085 -0.8 -0.9 hypothetical protein compare
RR42_RS25470 -0.8 -0.8 alpha/beta hydrolase compare
RR42_RS18140 -0.8 -0.8 MarR family transcriptional regulator compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Phenylacetic acid in Cupriavidus basilensis FW507-4G11

For carbon source Phenylacetic acid across organisms