Experiment set12IT060 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Norfloxacin 0.2 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -6.5 -4.5 chromosomal replication initiator protein DnaA compare
BBR_RS14210 -4.2 -2.9 hypothetical protein compare
BBR_RS20480 -4.0 -2.5 membrane protein compare
BBR_RS13040 -3.9 -2.7 CHAP domain-containing protein compare
BBR_RS19270 -3.9 -2.4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS19640 -3.8 -2.4 phosphoesterase compare
BBR_RS15070 -3.8 -3.7 endolytic transglycosylase MltG compare
BBR_RS15435 -3.6 -2.5 dihydroorotase compare
BBR_RS15455 -3.5 -2.4 orotate phosphoribosyltransferase compare
BBR_RS20760 -3.4 -3.3 hypothetical protein compare
BBR_RS11470 -3.3 -2.2 6-phosphogluconolactonase compare
BBR_RS15440 -3.2 -3.1 orotidine-5'-phosphate decarboxylase compare
BBR_RS12545 -3.2 -3.8 DUF4012 domain-containing protein compare
BBR_RS15080 -3.1 -3.0 chorismate synthase compare
BBR_RS13035 -3.1 -2.1 ABC transporter permease compare
BBR_RS11315 -3.1 -14.2 MFS transporter compare
BBR_RS15520 -3.1 -3.0 shikimate 5-dehydrogenase compare
BBR_RS10620 -3.0 -5.0 phosphoprotein phosphatase compare
BBR_RS10625 -2.9 -2.4 FHA domain-containing protein compare
BBR_RS19450 -2.9 -2.0 GTPase ObgE compare
BBR_RS20850 -2.9 -1.8 resolvase compare
BBR_RS10555 -2.8 -2.7 DUF3073 domain-containing protein compare
BBR_RS14540 -2.7 -3.3 Na+/H+ antiporter NhaA compare
BBR_RS20430 -2.7 -3.7 hypothetical protein compare
BBR_RS20460 -2.7 -4.4 chromosome partitioning protein ParB compare
BBR_RS16400 -2.6 -2.6 hypothetical protein compare
BBR_RS13635 -2.5 -6.5 carbamoyl-phosphate synthase large subunit compare
BBR_RS19435 -2.5 -1.7 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS19190 -2.4 -6.8 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS19375 -2.4 -2.3 acyl-CoA carboxylase subunit beta compare
BBR_RS16675 -2.3 -4.2 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS12235 -2.3 -2.1 hypothetical protein compare
BBR_RS16750 -2.3 -4.1 ParA family protein compare
BBR_RS14370 -2.3 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS16640 -2.2 -3.0 ABC transporter permease compare
BBR_RS16635 -2.2 -2.1 ABC transporter ATP-binding protein compare
BBR_RS18755 -2.1 -1.5 30S ribosome-binding factor RbfA compare
BBR_RS10755 -2.1 -5.3 adenylosuccinate synthase compare
BBR_RS13630 -2.1 -4.1 carbamoyl-phosphate synthase small subunit compare
BBR_RS19120 -2.1 -9.8 helicase compare
BBR_RS18045 -2.1 -1.8 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS19540 -2.1 -2.4 homoserine dehydrogenase compare
BBR_RS15085 -2.0 -1.9 3-dehydroquinate synthase compare
BBR_RS13490 -2.0 -1.8 30S ribosomal protein S7 compare
BBR_RS14240 -2.0 -5.0 1,4-alpha-glucan branching protein GlgB compare
BBR_RS14070 -2.0 -4.9 threonine synthase compare
BBR_RS19355 -2.0 -1.1 tRNA-Gly compare
BBR_RS16685 -1.9 -2.2 alcohol dehydrogenase compare
BBR_RS18565 -1.9 -1.8 CHAP domain-containing protein compare
BBR_RS11770 -1.9 -4.5 chorismate mutase compare
BBR_RS18690 -1.9 -6.1 diacylglycerol kinase compare
BBR_RS16845 -1.8 -1.6 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS20925 -1.8 -1.2 amino acid permease compare
BBR_RS14265 -1.8 -4.0 Solute-binding protein of ABC transporter system for metals compare
BBR_RS12355 -1.8 -3.5 ribonuclease III compare
BBR_RS15130 -1.7 -2.3 metal-sulfur cluster assembly factor compare
BBR_RS20465 -1.7 -6.4 chromosome partitioning protein compare
BBR_RS12375 -1.7 -1.6 pantetheine-phosphate adenylyltransferase compare
BBR_RS18735 -1.7 -8.7 hypothetical protein compare
BBR_RS15425 -1.7 -2.0 aspartate carbamoyltransferase compare
BBR_RS14205 -1.7 -2.8 hypothetical protein compare
BBR_RS16965 -1.7 -2.3 ATP-dependent DNA helicase compare
BBR_RS16430 -1.7 -2.2 nucleotide pyrophosphatase compare
BBR_RS19800 -1.6 -12.8 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS14585 -1.6 -1.7 hypothetical protein compare
BBR_RS13735 -1.5 -1.7 Lon protease compare
BBR_RS18140 -1.5 -1.8 tRNA-Asp compare
BBR_RS12980 -1.5 -8.7 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15055 -1.5 -2.1 hypothetical protein compare
BBR_RS20555 -1.5 -2.4 hypothetical protein compare
BBR_RS20830 -1.4 -1.8 hypothetical protein compare
BBR_RS18990 -1.4 -1.1 AbrB family transcriptional regulator compare
BBR_RS14330 -1.4 -1.6 glycogen debranching enzyme GlgX compare
BBR_RS13980 -1.4 -3.1 HD domain-containing protein compare
BBR_RS20455 -1.4 -5.0 thioredoxin-disulfide reductase compare
BBR_RS19815 -1.3 -9.5 ABC transporter permease compare
BBR_RS12460 -1.3 -5.4 LacI family DNA-binding transcriptional regulator compare
BBR_RS20435 -1.3 -1.2 CCA tRNA nucleotidyltransferase compare
BBR_RS12295 -1.3 -1.1 RNA-binding protein compare
BBR_RS15870 -1.3 -2.2 hypothetical protein compare
BBR_RS15355 -1.3 -2.1 DUF3800 domain-containing protein compare
BBR_RS19125 -1.3 -5.0 hypothetical protein compare
BBR_RS15360 -1.3 -1.9 hypothetical protein compare
BBR_RS13030 -1.3 -1.5 cell division ATP-binding protein FtsE compare
BBR_RS14190 -1.3 -4.8 transcriptional regulator compare
BBR_RS16625 -1.3 -3.7 DUF3710 domain-containing protein compare
BBR_RS19645 -1.3 -5.7 RNA degradosome polyphosphate kinase compare
BBR_RS17640 -1.2 -1.5 DNA-directed RNA polymerase subunit omega compare
BBR_RS19820 -1.2 -8.1 ATP-binding protein of ABC transporter system compare
BBR_RS18050 -1.2 -1.9 threonylcarbamoyl-AMP synthase compare
BBR_RS21170 -1.2 -5.5 membrane protein insertion efficiency factor YidD compare
BBR_RS14495 -1.2 -2.2 trigger factor compare
BBR_RS18795 -1.2 -2.4 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS15090 -1.2 -1.1 type II 3-dehydroquinate dehydratase compare
BBR_RS15655 -1.2 -3.1 Holliday junction branch migration protein RuvA compare
BBR_RS20440 -1.2 -3.9 NUDIX hydrolase compare
BBR_RS13125 -1.2 -1.4 ABC transporter permease compare
BBR_RS20955 -1.2 -1.2 hypothetical protein compare
BBR_RS12900 -1.2 -1.9 DeoR/GlpR transcriptional regulator compare
BBR_RS13455 -1.2 -2.4 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS13370 -1.2 -1.6 phosphoribosylamine--glycine ligase compare
BBR_RS12305 -1.1 -4.2 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS10990 -1.1 -5.0 recombination protein RecR compare
BBR_RS19070 -1.1 -1.0 50S ribosomal protein L33 compare
BBR_RS19165 -1.1 -1.7 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS14625 -1.1 -3.9 pyrroline-5-carboxylate reductase compare
BBR_RS19390 -1.1 -1.3 hypothetical protein compare
BBR_RS11970 -1.1 -1.7 Phage transcriptional regulator compare
BBR_RS13805 -1.1 -0.9 hypothetical protein compare
BBR_RS12975 -1.1 -6.5 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS16020 -1.1 -1.4 hypothetical protein compare
BBR_RS17135 -1.1 -1.2 RluA family pseudouridine synthase compare
BBR_RS14200 -1.0 -2.4 WhiB family transcriptional regulator compare
BBR_RS15750 -1.0 -1.1 hypothetical protein compare
BBR_RS14275 -1.0 -1.1 30S ribosomal protein S1 compare
BBR_RS19160 -1.0 -1.2 phosphate ABC transporter permease subunit PstC compare
BBR_RS12605 -1.0 -2.5 glycosyltransferase family 2 protein compare
BBR_RS20920 -1.0 -2.5 hypothetical protein compare
BBR_RS10580 -1.0 -1.3 septation inhibitor protein compare
BBR_RS10445 -1.0 -7.4 HlyC/CorC family transporter compare
BBR_RS18725 -1.0 -1.7 ribonuclease HI compare
BBR_RS10900 -1.0 -1.4 molecular chaperone DnaK compare
BBR_RS19535 -0.9 -6.1 homoserine kinase compare
BBR_RS13820 -0.9 -1.0 ATP-binding protein compare
BBR_RS15660 -0.9 -2.5 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS10265 -0.9 -5.0 DNA replication and repair protein RecF compare
BBR_RS15450 -0.9 -1.4 dihydroorotate dehydrogenase compare
BBR_RS13800 -0.9 -2.1 hypothetical protein compare
BBR_RS13740 -0.9 -2.2 DUF3052 domain-containing protein compare
BBR_RS19370 -0.9 -2.4 type I polyketide synthase compare
BBR_RS18185 -0.9 -1.9 hypoxanthine phosphoribosyltransferase compare
BBR_RS13910 -0.9 -0.8 arginine repressor compare
BBR_RS19155 -0.9 -3.5 phosphate ABC transporter, permease protein PstA compare
BBR_RS21015 -0.9 -0.8 hypothetical protein compare
BBR_RS14900 -0.9 -1.9 DNA-binding response regulator compare
BBR_RS16530 -0.9 -2.3 recombinase RecA compare
BBR_RS16490 -0.8 -1.7 polyprenyl synthase compare
BBR_RS13770 -0.8 -1.2 DNA repair protein RecO compare
BBR_RS19795 -0.8 -7.5 hypothetical protein compare
BBR_RS18575 -0.8 -1.6 hypothetical protein compare
BBR_RS11210 -0.8 -5.0 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS13450 -0.8 -0.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS13895 -0.8 -2.2 acetylglutamate kinase compare
BBR_RS11205 -0.8 -1.8 HPr family phosphocarrier protein compare
BBR_RS20795 -0.8 -1.1 cystathionine gamma-lyase compare
BBR_RS19760 -0.8 -0.8 polysaccharide ABC transporter ATPase compare
BBR_RS11175 -0.8 -5.0 penicillin-binding protein compare
BBR_RS19465 -0.8 -1.3 ribonuclease E/G compare
BBR_RS15785 -0.7 -1.3 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS15845 -0.7 -0.5 hypothetical protein compare
BBR_RS18745 -0.7 -0.6 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS15155 -0.7 -1.7 histidine triad nucleotide-binding protein compare
BBR_RS14230 -0.7 -2.2 HAMP domain-containing histidine kinase compare
BBR_RS14085 -0.7 -1.2 nicotinate-nucleotide adenylyltransferase compare
BBR_RS15650 -0.7 -1.0 Holliday junction resolvase compare
BBR_RS15050 -0.7 -1.3 DUF948 domain-containing protein compare
BBR_RS14280 -0.7 -1.2 dephospho-CoA kinase compare
BBR_RS16655 -0.7 -2.3 tyrosine recombinase XerC compare
BBR_RS12610 -0.7 -1.6 capsular polysaccharide biosynthesis protein compare
BBR_RS17660 -0.7 -1.4 hypothetical protein compare
BBR_RS16080 -0.7 -0.9 DUF1287 domain-containing protein compare
BBR_RS18180 -0.7 -2.6 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS17555 -0.6 -0.8 ubiquitin-like protein Pup compare
BBR_RS13785 -0.6 -3.2 myristoyl transferase compare
BBR_RS14300 -0.6 -1.8 NUDIX hydrolase compare
BBR_RS16610 -0.6 -1.3 hypothetical protein compare
BBR_RS16255 -0.6 -1.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS15445 -0.6 -1.9 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS13200 -0.6 -2.4 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
BBR_RS20700 -0.6 -1.3 ribulose phosphate epimerase compare
BBR_RS17295 -0.6 -1.5 RNA-binding protein compare
BBR_RS14610 -0.6 -1.0 DNA-binding response regulator compare
BBR_RS16300 -0.6 -2.0 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS20470 -0.6 -4.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
BBR_RS15745 -0.6 -0.9 hydrolase or phosphatase compare
BBR_RS11595 -0.6 -1.5 50S ribosomal protein L9 compare
BBR_RS18215 -0.6 -2.2 AI-2E family transporter compare
BBR_RS18700 -0.6 -3.0 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS14980 -0.6 -1.6 xanthine phosphoribosyltransferase compare
BBR_RS16275 -0.6 -0.7 leucine--tRNA ligase compare
BBR_RS13185 -0.6 -1.7 PIN domain-containing protein compare
BBR_RS15235 -0.6 -1.6 coproporphyrinogen III oxidase compare
BBR_RS15370 -0.6 -1.1 macro domain-containing protein compare
BBR_RS12590 -0.6 -1.1 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS17455 -0.6 -2.4 DNA-binding response regulator compare
BBR_RS16175 -0.6 -1.3 DNA integration/recombination/inversion protein compare
BBR_RS19350 -0.5 -1.2 tRNA-Val compare
BBR_RS10905 -0.5 -1.9 nucleotide exchange factor GrpE compare
BBR_RS15180 -0.5 -2.5 long-chain fatty acid--CoA ligase compare
BBR_RS16670 -0.5 -1.6 hypothetical protein compare
BBR_RS11395 -0.5 -1.4 DNA-binding protein compare
BBR_RS20450 -0.5 -4.2 murein biosynthesis integral membrane protein MurJ compare
BBR_RS16650 -0.5 -2.5 ABC transporter substrate-binding protein compare
BBR_RS17440 -0.5 -0.4 DUF3027 domain-containing protein compare
BBR_RS12905 -0.5 -1.2 galactose-1-phosphate uridylyltransferase compare
BBR_RS14505 -0.5 -1.1 hypothetical protein compare
BBR_RS16425 -0.5 -0.8 DUF3071 domain-containing protein compare
BBR_RS14740 -0.5 -1.4 YccF domain-containing protein compare
BBR_RS19755 -0.5 -3.3 glycosyl transferase compare
BBR_RS16520 -0.5 -2.4 ribosome-associated translation inhibitor RaiA compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Norfloxacin across organisms