Experiment set12IT059 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Nalidixic acid sodium salt 0.1 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS20850 +1.7 2.6 resolvase compare
BBR_RS20885 +1.2 1.6 hypothetical protein compare
BBR_RS10285 +1.0 3.1 membrane protein compare
BBR_RS11640 +1.0 1.8 hypothetical protein compare
BBR_RS16135 +0.9 1.8 peptide deformylase compare
BBR_RS20750 +0.8 2.7 GntR family transcriptional regulator compare
BBR_RS15845 +0.8 1.2 hypothetical protein compare
BBR_RS13070 +0.8 1.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS20690 +0.8 2.2 hypothetical protein compare
BBR_RS14970 +0.8 2.8 transcriptional regulator compare
BBR_RS12620 +0.8 5.5 glycosyltransferase family 1 protein compare
BBR_RS15350 +0.8 1.6 plasmid pRiA4b ORF-3 family protein compare
BBR_RS14765 +0.8 1.2 hypothetical protein compare
BBR_RS16950 +0.7 1.1 hypothetical protein compare
BBR_RS20775 +0.7 0.9 DUF4230 domain-containing protein compare
BBR_RS20910 +0.7 1.6 DUF1829 domain-containing protein compare
BBR_RS16020 +0.7 1.7 hypothetical protein compare
BBR_RS20955 +0.7 1.7 hypothetical protein compare
BBR_RS13910 +0.7 0.7 arginine repressor compare
BBR_RS12550 +0.7 5.5 sugar transferase compare
BBR_RS16960 +0.6 2.1 transcriptional regulator MraZ compare
BBR_RS12770 +0.6 1.8 hypothetical protein compare
BBR_RS20800 +0.6 1.2 hypothetical protein compare
BBR_RS17440 +0.6 0.7 DUF3027 domain-containing protein compare
BBR_RS16275 +0.6 1.1 leucine--tRNA ligase compare
BBR_RS21000 +0.6 1.7 hypothetical protein compare
BBR_RS14850 +0.6 1.5 VOC family protein compare
BBR_RS15990 +0.6 2.6 DNA-binding response regulator compare
BBR_RS18170 +0.5 1.2 dihydropteroate synthase compare
BBR_RS16855 +0.5 1.6 NUDIX domain-containing protein compare
BBR_RS14910 +0.5 2.6 E1-E2 ATPase compare
BBR_RS20825 +0.5 1.2 hypothetical protein compare
BBR_RS13400 +0.5 1.8 DNA-deoxyinosine glycosylase compare
BBR_RS20695 +0.5 1.3 hypothetical protein compare
BBR_RS14325 +0.5 1.8 NUDIX hydrolase compare
BBR_RS15460 +0.5 1.7 hypothetical protein compare
BBR_RS16425 +0.5 0.8 DUF3071 domain-containing protein compare
BBR_RS15360 +0.4 1.4 hypothetical protein compare
BBR_RS15335 +0.4 1.3 hypothetical protein compare
BBR_RS11950 +0.4 1.8 tRNA-Tyr compare
BBR_RS17305 +0.4 1.7 hypothetical protein compare
BBR_RS11240 +0.4 1.3 GtrA family protein compare
BBR_RS19160 +0.4 0.7 phosphate ABC transporter permease subunit PstC compare
BBR_RS15370 +0.4 1.3 macro domain-containing protein compare
BBR_RS19905 +0.4 0.6 methionine--tRNA ligase compare
BBR_RS19355 +0.4 0.7 tRNA-Gly compare
BBR_RS15945 +0.4 1.6 hypothetical protein compare
BBR_RS17465 +0.4 1.6 WXG100 family type VII secretion target compare
BBR_RS14480 +0.4 1.8 pyruvate formate-lyase 1-activating enzyme compare
BBR_RS15920 +0.4 1.2 type II toxin-antitoxin system YafQ family toxin compare
BBR_RS13750 +0.4 0.6 DivIVA domain-containing protein compare
BBR_RS16060 +0.4 1.0 hypothetical protein compare
BBR_RS18485 +0.4 1.4 IS30 family transposase compare
BBR_RS16325 +0.4 2.3 AGE family epimerase/isomerase compare
BBR_RS17590 +0.4 1.4 PTS sugar transporter subunit IIA compare
BBR_RS15790 +0.4 1.7 ATP phosphoribosyltransferase compare
BBR_RS14610 +0.4 0.8 DNA-binding response regulator compare
BBR_RS16905 +0.4 1.5 hypothetical protein compare
BBR_RS11185 +0.4 0.9 type I DNA topoisomerase compare
BBR_RS14440 +0.4 1.8 Cof-type HAD-IIB family hydrolase compare
BBR_RS17155 +0.4 0.5 cell division protein SepF compare
BBR_RS16955 +0.3 0.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS16780 +0.3 1.6 hypothetical protein compare
BBR_RS16285 +0.3 1.8 magnesium transporter CorA family protein compare
BBR_RS13520 +0.3 1.8 polysaccharide synthesis protein GtrA compare
BBR_RS14140 +0.3 0.7 Ppx/GppA family phosphatase compare
BBR_RS14505 +0.3 1.1 hypothetical protein compare
BBR_RS14425 +0.3 1.8 histidine phosphatase family protein compare
BBR_RS18395 +0.3 1.5 hypothetical protein compare
BBR_RS15970 +0.3 1.2 hypothetical protein compare
BBR_RS16620 +0.3 1.5 DUF3159 domain-containing protein compare
BBR_RS13625 +0.3 1.2 transcription antitermination factor NusB compare
BBR_RS13940 +0.3 0.9 integrase compare
BBR_RS18555 +0.3 2.2 NlpC/P60 family protein compare
BBR_RS19290 +0.3 1.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
BBR_RS14570 +0.3 2.0 ATP-binding protein compare
BBR_RS12925 +0.3 0.8 hypothetical protein compare
BBR_RS15135 +0.3 2.0 glucose-1-phosphate adenylyltransferase compare
BBR_RS20675 +0.3 1.5 hypothetical protein compare
BBR_RS20570 +0.3 1.8 hypothetical protein compare
BBR_RS13945 +0.3 1.0 Txe/YoeB family addiction module toxin compare
BBR_RS17650 +0.3 0.8 cell filamentation protein Fic compare
BBR_RS17610 +0.3 1.6 DedA family protein compare
BBR_RS12055 +0.3 2.3 thioredoxin compare
BBR_RS20870 +0.3 0.8 hypothetical protein compare
BBR_RS15345 +0.3 1.3 transporter compare
BBR_RS12710 +0.3 0.8 hypothetical protein compare
BBR_RS20865 +0.3 0.9 glycogen phosphorylase compare
BBR_RS14360 +0.3 1.4 hypothetical protein compare
BBR_RS15030 +0.3 1.0 mRNA interferase PemK compare
BBR_RS19055 +0.3 0.6 ferredoxin family protein compare
BBR_RS19240 +0.3 2.2 LacI family transcriptional regulator compare
BBR_RS14800 +0.3 1.2 glucosamine-6-phosphate deaminase compare
BBR_RS17060 +0.3 1.2 acylphosphatase compare
BBR_RS13835 +0.3 1.6 FAD-dependent oxidoreductase compare
BBR_RS20755 +0.3 1.3 IS3 family transposase compare
BBR_RS17855 +0.3 2.3 ABC transporter ATP-binding protein compare
BBR_RS20770 +0.3 0.7 30S ribosomal protein S14 compare
BBR_RS15795 +0.3 0.8 phosphoribosyl-ATP diphosphatase compare
BBR_RS14700 +0.3 0.8 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS20510 +0.3 1.9 Conserved hypothetical protein, phage protein compare
BBR_RS19275 +0.3 2.5 laccase domain-containing protein compare
BBR_RS14120 +0.3 1.5 aldo/keto reductase compare
BBR_RS14445 +0.3 1.8 Solute-binding protein of ABC transporter system compare
BBR_RS14940 +0.3 1.4 hypothetical protein compare
BBR_RS14020 +0.3 1.0 TrkA family potassium uptake protein compare
BBR_RS15960 +0.3 1.1 hypothetical protein compare
BBR_RS14460 +0.3 1.5 amidohydrolase compare
BBR_RS14150 +0.3 1.3 hypothetical protein compare
BBR_RS20325 +0.3 2.0 PTS lactose transporter subunit IIB compare
BBR_RS13535 +0.3 1.4 MerR family DNA-binding transcriptional regulator compare
BBR_RS12575 +0.3 0.9 hypothetical protein compare
BBR_RS18005 +0.3 1.4 hypothetical protein compare
BBR_RS17615 +0.2 1.6 phosphoserine phosphatase SerB compare
BBR_RS14630 +0.2 1.5 glutamine-binding protein glnH compare
BBR_RS20805 +0.2 0.9 hypothetical protein compare
BBR_RS20830 +0.2 0.6 hypothetical protein compare
BBR_RS12725 +0.2 0.9 hypothetical protein compare
BBR_RS18755 +0.2 0.5 30S ribosome-binding factor RbfA compare
BBR_RS16185 +0.2 1.2 transposase compare
BBR_RS14890 +0.2 1.4 inorganic phosphate transporter compare
BBR_RS15840 +0.2 1.2 VanZ family protein compare
BBR_RS20935 +0.2 0.7 hypothetical protein compare
BBR_RS17110 +0.2 1.6 oleate hydratase compare
BBR_RS13600 +0.2 1.4 carbohydrate-binding protein compare
BBR_RS16380 +0.2 0.9 hypothetical protein compare
BBR_RS15415 +0.2 1.0 choloylglycine hydrolase compare
BBR_RS14485 +0.2 1.1 DUF3000 domain-containing protein compare
BBR_RS16580 +0.2 1.2 EamA/RhaT family transporter compare
BBR_RS14010 +0.2 1.0 TlyA family rRNA (cytidine-2'-O)-methyltransferase compare
BBR_RS12470 +0.2 1.9 long-chain fatty acid--CoA ligase compare
BBR_RS20625 +0.2 1.3 hypothetical protein compare
BBR_RS16805 +0.2 1.4 aldose 1-epimerase compare
BBR_RS17655 +0.2 1.4 transposase compare
BBR_RS19395 +0.2 0.4 hypothetical protein compare
BBR_RS20420 +0.2 1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS19270 +0.2 0.3 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS16010 +0.2 0.8 hypothetical protein compare
BBR_RS13275 +0.2 1.5 hypothetical protein compare
BBR_RS14740 +0.2 0.9 YccF domain-containing protein compare
BBR_RS14275 +0.2 0.4 30S ribosomal protein S1 compare
BBR_RS15590 +0.2 1.1 molecular chaperone DnaJ compare
BBR_RS20665 +0.2 0.7 hypothetical protein compare
BBR_RS20515 +0.2 1.4 transposase compare
BBR_RS10615 +0.2 0.9 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS15855 +0.2 0.7 N-acetyltransferase compare
BBR_RS20200 +0.2 2.0 alpha-galactosidase compare
BBR_RS13175 +0.2 1.2 deoxyguanosinetriphosphate triphosphohydrolase compare
BBR_RS16300 +0.2 0.9 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS12155 +0.2 1.6 sugar ABC transporter permease compare
BBR_RS19675 +0.2 1.4 carbohydrate ABC transporter permease compare
BBR_RS11715 +0.2 1.7 N-acetyltransferase compare
BBR_RS14780 +0.2 0.6 XRE family transcriptional regulator compare
BBR_RS12175 +0.2 1.3 TetR/AcrR family transcriptional regulator compare
BBR_RS15015 +0.2 0.8 cytidine deaminase compare
BBR_RS20980 +0.2 0.5 hypothetical protein compare
BBR_RS13355 +0.2 1.1 ABC transporter substrate-binding protein compare
BBR_RS12195 +0.2 1.6 alpha-amylase compare
BBR_RS17570 +0.2 1.4 ribulose-phosphate 3-epimerase compare
BBR_RS19625 +0.2 1.7 3-isopropylmalate dehydratase small subunit compare
BBR_RS18220 +0.2 1.2 glycosyltransferase family 2 protein compare
BBR_RS12895 +0.2 1.5 quinone-dependent dihydroorotate dehydrogenase compare
BBR_RS17980 +0.2 1.3 GNAT family N-acetyltransferase compare
BBR_RS17580 +0.2 0.8 PTS fructose transporter subunit IIB compare
BBR_RS14805 +0.2 1.0 NagC family transcriptional regulator compare
BBR_RS19865 +0.2 1.2 endo-1,4-beta-xylanase compare
BBR_RS12805 +0.2 0.6 hypothetical protein compare
BBR_RS21110 +0.2 1.1 AraC family transcriptional regulator compare
BBR_RS13385 +0.2 1.4 type VI secretion protein ImpB compare
BBR_RS17175 +0.2 1.2 hypothetical protein compare
BBR_RS15565 +0.2 0.9 hypothetical protein compare
BBR_RS18070 +0.2 1.5 branched-chain amino acid ABC transporter permease compare
BBR_RS16005 +0.2 1.1 ABC transporter compare
BBR_RS18530 +0.2 1.0 low molecular weight phosphotyrosine protein phosphatase compare
BBR_RS14955 +0.2 1.1 hypothetical protein compare
BBR_RS17340 +0.2 1.0 polyphosphate kinase 2 family protein compare
BBR_RS15295 +0.2 0.7 Cof-type HAD-IIB family hydrolase compare
BBR_RS13550 +0.2 1.0 DUF47 domain-containing protein compare
BBR_RS20320 +0.2 1.6 PTS ascorbate transporter subunit IIC compare
BBR_RS13765 +0.2 1.2 alpha/beta hydrolase compare
BBR_RS17880 +0.2 0.5 nucleotidyltransferase compare
BBR_RS16595 +0.2 0.9 N-acetyltransferase compare
BBR_RS14710 +0.2 1.0 hypothetical protein compare
BBR_RS15715 +0.2 0.9 Cof-type HAD-IIB family hydrolase compare
BBR_RS12515 +0.2 1.3 LacI family transcriptional regulator compare
BBR_RS13800 +0.2 0.5 hypothetical protein compare
BBR_RS16510 +0.2 1.3 anthranilate phosphoribosyltransferase compare
BBR_RS16225 +0.2 1.4 type IA DNA topoisomerase compare
BBR_RS17930 +0.2 1.2 flavodoxin family protein compare
BBR_RS20075 +0.2 1.4 LacI family transcriptional regulator compare
BBR_RS15640 +0.2 0.8 HIT domain-containing protein compare
BBR_RS18610 +0.2 1.2 MFS transporter compare
BBR_RS13650 +0.2 0.9 3'-5' exonuclease compare
BBR_RS11825 +0.2 1.2 glycoside hydrolase compare
BBR_RS17220 +0.2 0.9 thiamine-binding protein compare
BBR_RS10700 +0.2 1.3 putative heavy metal-binding protein compare
BBR_RS15730 +0.2 0.5 hypothetical protein compare
BBR_RS19345 +0.2 0.7 tRNA-Val compare
BBR_RS13050 +0.2 1.3 ABC transporter substrate-binding protein compare
BBR_RS21060 +0.2 0.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Nalidixic acid sodium salt across organisms