Experiment set12IT057 for Paraburkholderia graminis OAS925

Compare to:

RCH2_defined_glucose_5mM with Adenine 5 mM

200 most detrimental genes:

  gene name fitness t score description  
ABIE53_003664 +5.3 23.8 release factor glutamine methyltransferase compare
ABIE53_003190 +5.1 26.8 adenosine deaminase compare
ABIE53_003191 +5.0 19.3 adenosine deaminase compare
ABIE53_006516 +4.8 15.9 cytochrome d ubiquinol oxidase subunit I compare
ABIE53_006517 +4.4 12.4 cytochrome d ubiquinol oxidase subunit II compare
ABIE53_003187 +3.9 21.8 xanthine dehydrogenase small subunit compare
ABIE53_000795 +3.9 20.9 MurNAc alpha-1-phosphate uridylyltransferase compare
ABIE53_003188 +3.6 22.5 xanthine dehydrogenase large subunit compare
ABIE53_002385 +3.5 16.7 DNA-binding transcriptional LysR family regulator compare
ABIE53_000855 +3.4 23.5 glutamine synthetase adenylyltransferase compare
ABIE53_003288 +3.1 8.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA compare
ABIE53_003512 +3.1 8.1 DNA-binding transcriptional LysR family regulator compare
ABIE53_000306 +2.9 3.3 general secretion pathway protein M compare
ABIE53_002450 +2.8 14.7 cell division protein ZapE compare
ABIE53_001398 +2.7 13.8 enamine deaminase RidA (YjgF/YER057c/UK114 family) compare
ABIE53_003511 +2.6 8.9 glutamate dehydrogenase (NAD(P)+) compare
ABIE53_002100 +2.6 17.4 two-component system osmolarity sensor histidine kinase EnvZ compare
ABIE53_003410 +2.6 13.7 TetR/AcrR family acrAB operon transcriptional repressor compare
ABIE53_001149 +2.5 12.0 acetyltransferase-like isoleucine patch superfamily enzyme compare
ABIE53_001150 +2.5 13.4 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_001148 +2.4 16.3 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_003815 +2.4 9.6 tRNA-Arg compare
ABIE53_000854 +2.4 10.7 hypothetical protein compare
ABIE53_001694 +2.4 10.2 iron complex outermembrane receptor protein compare
ABIE53_002102 +2.3 13.3 hypothetical protein compare
ABIE53_001650 +2.3 4.5 hemin uptake protein HemP compare
ABIE53_000558 +2.3 17.2 sodium/bile acid cotransporter 7 compare
ABIE53_003444 +2.3 9.8 succinyl-CoA synthetase alpha subunit compare
ABIE53_003014 +2.2 18.3 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_000078 +2.2 9.1 flagellar FliJ protein compare
ABIE53_004815 +2.2 11.6 hypothetical protein compare
ABIE53_000095 +2.2 10.7 flagellar L-ring protein precursor FlgH compare
ABIE53_002706 +2.2 8.2 DNA-3-methyladenine glycosylase II compare
ABIE53_004548 +2.1 2.5 4-oxalocrotonate tautomerase compare
ABIE53_003583 +2.1 14.9 hypoxanthine phosphoribosyltransferase compare
ABIE53_000108 +2.1 16.8 RNA polymerase sigma factor for flagellar operon FliA compare
ABIE53_001695 +2.1 6.2 ABC-type Fe3+-hydroxamate transport system substrate-binding protein compare
ABIE53_001696 +2.1 3.7 ABC-type Fe3+-siderophore transport system permease subunit compare
ABIE53_000099 +2.1 13.3 hypothetical protein compare
ABIE53_000094 +2.1 15.4 flagellar P-ring protein precursor FlgI compare
ABIE53_005044 +2.1 3.4 putative AcnD-accessory protein PrpF compare
ABIE53_000101 +2.1 12.8 flagellar basal-body rod protein FlgC compare
ABIE53_003445 +2.1 7.1 succinyl-CoA synthetase beta subunit compare
ABIE53_000076 +2.1 11.9 flagellar assembly protein FliH compare
ABIE53_001145 +2.1 13.3 lipopolysaccharide transport system permease protein compare
ABIE53_003638 +2.1 7.4 ribulose-phosphate 3-epimerase compare
ABIE53_003189 +2.1 4.4 xanthine dehydrogenase accessory factor compare
ABIE53_000074 +2.1 18.8 flagellar M-ring protein FliF compare
ABIE53_003029 +2.1 3.9 uncharacterized protein YjbJ (UPF0337 family) compare
ABIE53_003994 +2.1 4.0 DNA-binding protein HU-beta compare
ABIE53_000096 +2.0 12.9 flagellar basal-body rod protein FlgG compare
ABIE53_000113 +2.0 15.5 flagellar biosynthesis protein FlhA compare
ABIE53_002201 +2.0 13.1 malate synthase compare
ABIE53_000015 +2.0 16.2 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) compare
ABIE53_000112 +2.0 13.7 hypothetical protein compare
ABIE53_000097 +2.0 8.6 flagellar basal-body rod protein FlgF compare
ABIE53_001829 +2.0 2.3 N utilization substance protein A compare
ABIE53_000831 +2.0 13.2 queuine tRNA-ribosyltransferase compare
ABIE53_000098 +2.0 18.2 flagellar hook protein FlgE compare
ABIE53_000103 +2.0 17.9 flagella basal body P-ring formation protein FlgA compare
ABIE53_000082 +2.0 7.2 flagellar motor switch protein FliN/FliY compare
ABIE53_001828 +1.9 12.0 ribosome maturation factor RimP compare
ABIE53_001144 +1.9 15.1 lipopolysaccharide transport system ATP-binding protein compare
ABIE53_000805 +1.9 4.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABIE53_001940 +1.9 11.8 ribonuclease R compare
ABIE53_000102 +1.9 13.4 flagellar basal-body rod protein FlgB compare
ABIE53_000077 +1.9 14.9 flagellum-specific ATP synthase compare
ABIE53_000449 +1.9 4.1 signal transduction histidine kinase compare
ABIE53_005752 +1.9 8.3 DNA-binding PadR family transcriptional regulator compare
ABIE53_000706 +1.9 5.5 large subunit ribosomal protein L25 compare
ABIE53_002436 +1.9 7.4 tight adherence protein C compare
ABIE53_000725 +1.9 10.4 adenine phosphoribosyltransferase compare
ABIE53_000086 +1.9 14.1 flagellar biosynthetic protein FliR compare
ABIE53_001947 +1.9 7.6 CRP-like cAMP-binding protein compare
ABIE53_003688 +1.9 15.0 sec-independent protein translocase protein TatC compare
ABIE53_000085 +1.8 12.8 flagellar biosynthetic protein FliQ compare
ABIE53_000079 +1.8 14.8 flagellar hook-length control protein FliK compare
ABIE53_000084 +1.8 13.0 flagellar biosynthetic protein FliP compare
ABIE53_000419 +1.8 2.3 two-component system sensor histidine kinase RegB compare
ABIE53_000075 +1.8 11.5 flagellar motor switch protein FliG compare
ABIE53_001930 +1.8 2.5 hypothetical protein compare
ABIE53_003525 +1.8 13.7 LPS-assembly lipoprotein compare
ABIE53_000083 +1.8 10.2 flagellar protein FliO/FliZ compare
ABIE53_002726 +1.8 7.8 hypothetical protein compare
ABIE53_003030 +1.8 14.2 two-component system response regulator HydG compare
ABIE53_000114 +1.8 12.6 flagellar biosynthetic protein FlhB compare
ABIE53_000870 +1.8 8.1 poly(A) polymerase compare
ABIE53_000800 +1.8 7.7 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase compare
ABIE53_004710 +1.7 6.8 cellulase/cellobiase CelA1 compare
ABIE53_003015 +1.7 15.2 ATP-binding cassette subfamily B protein compare
ABIE53_003689 +1.7 9.0 sec-independent protein translocase protein TatB compare
ABIE53_000100 +1.7 4.1 flagellar basal-body rod modification protein FlgD compare
ABIE53_004814 +1.6 8.2 DedD protein compare
ABIE53_004324 +1.6 12.8 LuxR family quorum-sensing transcriptional regulator LasR compare
ABIE53_003118 +1.6 7.2 molybdopterin adenylyltransferase compare
ABIE53_002435 +1.6 6.9 Flp pilus assembly protein TadD compare
ABIE53_000547 +1.6 6.1 EAL domain-containing protein (putative c-di-GMP-specific phosphodiesterase class I) compare
ABIE53_000081 +1.6 9.7 flagellar motor switch protein FliM compare
ABIE53_002538 +1.6 4.1 DNA-binding transcriptional LysR family regulator compare
ABIE53_002496 +1.6 9.7 regulator of sigma E protease compare
ABIE53_003399 +1.5 7.6 zinc/manganese transport system ATP-binding protein compare
ABIE53_003060 +1.5 8.7 cyclic pyranopterin phosphate synthase compare
ABIE53_003620 +1.5 1.8 cell division protein FtsL compare
ABIE53_003114 +1.5 12.7 DNA-binding NtrC family response regulator compare
ABIE53_000111 +1.5 10.6 flagellar biosynthesis GTPase FlhF compare
ABIE53_004475 +1.5 2.9 hypothetical protein compare
ABIE53_002905 +1.5 13.0 GTP pyrophosphokinase compare
ABIE53_001142 +1.5 5.1 hypothetical protein compare
ABIE53_006090 +1.5 1.4 antitoxin MazE compare
ABIE53_003116 +1.5 11.7 PmbA protein compare
ABIE53_005957 +1.5 2.6 hypothetical protein compare
ABIE53_004806 +1.5 6.8 pilus assembly protein FimV compare
ABIE53_000237 +1.5 3.6 glycine cleavage system H protein compare
ABIE53_001141 +1.5 6.9 GT2 family glycosyltransferase compare
ABIE53_001185 +1.4 5.2 UDP-glucose 4-epimerase compare
ABIE53_002702 +1.4 4.6 hypothetical protein compare
ABIE53_001143 +1.4 10.4 GT2 family glycosyltransferase compare
ABIE53_001648 +1.4 6.3 high-affinity iron transporter compare
ABIE53_001147 +1.4 10.9 ubiquinone/menaquinone biosynthesis C-methylase UbiE/glycosyltransferase involved in cell wall biosynthesis/regulator of replication initiation timing compare
ABIE53_000093 +1.4 11.2 flagellar protein FlgJ compare
ABIE53_001081 +1.4 8.3 two-component system response regulator PhcR compare
ABIE53_003464 +1.4 11.7 hypothetical protein compare
ABIE53_001686 +1.4 6.0 putative ATP-binding cassette transporter compare
ABIE53_000299 +1.4 6.5 general secretion pathway protein C compare
ABIE53_001146 +1.4 8.2 lipopolysaccharide transport system ATP-binding protein compare
ABIE53_000300 +1.4 7.9 general secretion pathway protein G compare
ABIE53_004304 +1.4 6.8 putative membrane protein compare
ABIE53_002856 +1.4 2.1 transcription elongation GreA/GreB family factor compare
ABIE53_001197 +1.4 1.8 urease subunit beta compare
ABIE53_001649 +1.4 8.6 polyferredoxin compare
ABIE53_002030 +1.4 6.0 molybdopterin synthase catalytic subunit compare
ABIE53_000282 +1.4 9.1 two-component system OmpR family response regulator compare
ABIE53_001858 +1.4 2.8 uncharacterized protein YqgQ compare
ABIE53_001647 +1.4 2.6 plastocyanin compare
ABIE53_000466 +1.4 10.2 Lrp/AsnC family leucine-responsive transcriptional regulator compare
ABIE53_005160 +1.4 5.9 diguanylate cyclase (GGDEF)-like protein compare
ABIE53_002322 +1.3 9.4 LacI family transcriptional regulator compare
ABIE53_004054 +1.3 5.1 methyl-accepting chemotaxis protein compare
ABIE53_000303 +1.3 6.1 general secretion pathway protein J compare
ABIE53_003510 +1.3 6.7 glutamate/aspartate transport system substrate-binding protein compare
ABIE53_003660 +1.3 2.7 hypothetical protein compare
ABIE53_004828 +1.3 8.3 starch synthase (maltosyl-transferring) compare
ABIE53_003398 +1.3 8.1 zinc/manganese transport system substrate-binding protein compare
ABIE53_003440 +1.3 5.9 cyclic pyranopterin phosphate synthase compare
ABIE53_000283 +1.3 8.2 signal transduction histidine kinase compare
ABIE53_000851 +1.3 9.5 TldD protein compare
ABIE53_000798 +1.3 6.7 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_003881 +1.3 1.6 dihydroxyacetone kinase-like protein compare
ABIE53_002427 +1.2 7.2 host factor-I protein compare
ABIE53_005862 +1.2 6.8 DSF synthase compare
ABIE53_006060 +1.2 5.2 DNA-binding winged helix-turn-helix (wHTH) protein/predicted ATPase compare
ABIE53_006365 +1.2 2.6 hypothetical protein compare
ABIE53_003648 +1.2 7.8 thiol:disulfide interchange protein DsbC compare
ABIE53_003556 +1.2 2.8 2-dehydro-3-deoxyphosphogalactonate aldolase compare
ABIE53_004784 +1.2 3.5 6,7-dimethyl-8-ribityllumazine synthase compare
ABIE53_002540 +1.2 9.0 malate synthase compare
ABIE53_000305 +1.2 10.0 general secretion pathway protein L compare
ABIE53_000298 +1.2 9.7 general secretion pathway protein F compare
ABIE53_000130 +1.2 7.5 flagellar transcriptional activator FlhD compare
ABIE53_003003 +1.2 5.8 transcription elongation factor GreA compare
ABIE53_002432 +1.2 7.5 putative membrane protein compare
ABIE53_000918 +1.2 5.2 DNA-binding transcriptional LysR family regulator compare
ABIE53_001704 +1.2 2.1 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) compare
ABIE53_005043 +1.2 7.6 iron-sulfur-dependent 2-methylisocitrate dehydratase compare
ABIE53_000122 +1.2 0.9 hypothetical protein compare
ABIE53_000875 +1.2 4.7 tRNA dimethylallyltransferase compare
ABIE53_001160 +1.2 6.7 GT2 family glycosyltransferase compare
ABIE53_002506 +1.2 8.3 methionyl aminopeptidase compare
ABIE53_000424 +1.2 8.7 G3E family GTPase compare
ABIE53_000297 +1.2 7.8 general secretion pathway protein E compare
ABIE53_000295 +1.2 9.3 general secretion pathway protein D compare
ABIE53_002549 +1.1 5.0 microcin C transport system permease protein compare
ABIE53_001970 +1.1 2.1 type IV secretory pathway TrbL component compare
ABIE53_004457 +1.1 1.7 hypothetical protein compare
ABIE53_000502 +1.1 4.2 hypothetical protein compare
ABIE53_000448 +1.1 8.3 two-component system invasion response regulator UvrY compare
ABIE53_000567 +1.1 1.9 Lrp/AsnC family leucine-responsive transcriptional regulator compare
ABIE53_001646 +1.1 6.0 uncharacterized protein involved in high-affinity Fe2+ transport compare
ABIE53_002487 +1.1 4.2 regulator of PEP synthase PpsR (kinase-PPPase family) compare
ABIE53_004097 +1.1 6.1 flagellar transcriptional activator FlhD compare
ABIE53_003619 +1.1 4.3 cell division protein FtsI (penicillin-binding protein 3) compare
ABIE53_000726 +1.1 1.9 threonine/homoserine/homoserine lactone efflux protein compare
ABIE53_001007 +1.1 1.1 hypothetical protein compare
ABIE53_004325 +1.1 3.0 hypothetical protein compare
ABIE53_004807 +1.1 5.9 tRNA pseudouridine38-40 synthase compare
ABIE53_000307 +1.1 6.2 general secretion pathway protein N compare
ABIE53_005401 +1.1 6.1 hypothetical protein compare
ABIE53_005372 +1.1 2.0 steroid delta-isomerase-like uncharacterized protein compare
ABIE53_000263 +1.1 8.9 16S rRNA (guanine527-N7)-methyltransferase compare
ABIE53_003728 +1.1 1.3 signal transduction histidine kinase compare
ABIE53_001469 +1.1 2.2 RimJ/RimL family protein N-acetyltransferase compare
ABIE53_006398 +1.1 1.7 FMN-dependent oxidoreductase (nitrilotriacetate monooxygenase family) compare
ABIE53_000304 +1.1 6.9 general secretion pathway protein K compare
ABIE53_003887 +1.1 2.2 ribose transport system substrate-binding protein compare
ABIE53_000452 +1.1 2.5 endonuclease/exonuclease/phosphatase family metal-dependent hydrolase compare
ABIE53_005086 +1.1 2.9 protein-tyrosine-phosphatase compare
ABIE53_003596 +1.1 7.3 leader peptidase (prepilin peptidase)/N-methyltransferase compare
ABIE53_002064 +1.0 8.0 polyhydroxyalkanoate synthase compare
ABIE53_004852 +1.0 7.3 DNA polymerase-1 compare
ABIE53_006389 +1.0 2.4 phosphoketolase compare


Specific Phenotypes

For 43 genes in this experiment

For stress Adenine hydrochloride hydrate in Paraburkholderia graminis OAS925

For stress Adenine hydrochloride hydrate across organisms