Experiment set12IT056 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and Glycine betaine (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS30215 -4.7 -10.6 KTSC domain-containing protein compare
PFLU_RS01625 -4.5 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS03555 -4.4 -2.0 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS01610 -4.2 -14.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS20540 -3.9 -13.2 phosphoribosylanthranilate isomerase compare
PFLU_RS25360 -3.9 -8.7 glutamate 5-kinase compare
PFLU_RS00175 -3.9 -11.3 tryptophan synthase subunit alpha compare
PFLU_RS02590 -3.8 -11.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20565 -3.8 -18.1 3-isopropylmalate dehydrogenase compare
PFLU_RS01620 -3.8 -12.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS23380 -3.8 -4.4 HAD-IB family hydrolase compare
PFLU_RS25640 -3.7 -16.0 ketol-acid reductoisomerase compare
PFLU_RS28645 -3.7 -19.1 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS27370 -3.7 -15.8 anthranilate phosphoribosyltransferase compare
PFLU_RS02050 -3.7 -20.8 NAD(P)-binding protein compare
PFLU_RS00180 -3.6 -9.9 tryptophan synthase subunit beta compare
PFLU_RS28535 -3.6 -20.3 dihydroxy-acid dehydratase compare
PFLU_RS28165 -3.6 -15.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS02365 -3.5 -14.7 glycosyltransferase compare
PFLU_RS02045 -3.5 -25.3 glutamate synthase large subunit compare
PFLU_RS04465 -3.5 -11.8 ATP phosphoribosyltransferase compare
PFLU_RS28385 -3.5 -16.5 homoserine O-acetyltransferase compare
PFLU_RS06055 -3.5 -2.5 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS04470 -3.5 -15.4 histidinol dehydrogenase compare
PFLU_RS20575 -3.4 -8.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS01605 -3.4 -11.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27875 -3.4 -13.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS20510 -3.4 -17.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS08155 -3.3 -5.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS20580 -3.3 -16.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS24765 -3.2 -20.4 2-isopropylmalate synthase compare
PFLU_RS25760 -3.2 -15.8 glucose-6-phosphate isomerase compare
PFLU_RS09055 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01685 -3.1 -6.5 nitrogen regulation protein NR(I) compare
PFLU_RS27365 -3.1 -10.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS22595 -3.0 -2.9 OmpA family protein compare
PFLU_RS26735 -3.0 -10.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS04315 -3.0 -5.0 rod shape-determining protein MreD compare
PFLU_RS27870 -3.0 -16.9 electron transfer flavoprotein subunit beta compare
PFLU_RS13485 -3.0 -17.5 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS25715 -3.0 -10.9 RNA polymerase-binding protein DksA compare
PFLU_RS21665 -3.0 -8.0 MinD/ParA family protein compare
PFLU_RS27810 -2.9 -17.2 sarcosine oxidase subunit alpha compare
PFLU_RS27475 -2.9 -7.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS21495 -2.9 -5.1 TlpA family protein disulfide reductase compare
PFLU_RS13010 -2.9 -6.3 Fe-S biogenesis protein NfuA compare
PFLU_RS12450 -2.9 -14.0 cyclic peptide export ABC transporter compare
PFLU_RS28390 -2.8 -11.4 methionine biosynthesis protein MetW compare
PFLU_RS27820 -2.8 -14.0 sarcosine oxidase subunit beta compare
PFLU_RS28695 -2.7 -6.0 phosphoglycerate dehydrogenase compare
PFLU_RS27865 -2.7 -13.3 glycine-betaine demethylase subunit GbcA compare
PFLU_RS20515 -2.7 -4.0 amidophosphoribosyltransferase compare
PFLU_RS25735 -2.7 -8.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS27880 -2.6 -9.9 dimethylglycine demethylation protein DgcB compare
PFLU_RS01900 -2.6 -10.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS22740 -2.6 -5.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS10430 -2.6 -4.9 peptidase compare
PFLU_RS00065 -2.6 -8.3 lysophospholipid acyltransferase compare
PFLU_RS27815 -2.6 -8.7 sarcosine oxidase subunit delta compare
PFLU_RS27890 -2.5 -11.9 hypothetical protein compare
PFLU_RS02455 -2.5 -3.7 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS27895 -2.5 -10.7 membrane dipeptidase compare
PFLU_RS12980 -2.4 -10.4 nitrite/sulfite reductase compare
PFLU_RS27885 -2.4 -13.4 dimethylglycine demethylation protein DgcA compare
PFLU_RS12975 -2.4 -5.8 DUF934 domain-containing protein compare
PFLU_RS08660 -2.3 -2.7 heme exporter protein CcmD compare
PFLU_RS27825 -2.3 -13.0 serine hydroxymethyltransferase compare
PFLU_RS27970 -2.3 -9.3 choline ABC transporter permease subunit compare
PFLU_RS07665 -2.3 -3.6 type I DNA topoisomerase compare
PFLU_RS27805 -2.3 -3.8 sarcosine oxidase subunit gamma family protein compare
PFLU_RS13475 -2.2 -12.7 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS27860 -2.2 -8.4 glycine-betaine demethylase subunit GbcB compare
PFLU_RS04150 -2.2 -9.2 DUF1043 family protein compare
PFLU_RS28655 -2.2 -13.6 HAD family hydrolase compare
PFLU_RS27910 -2.2 -1.3 helix-turn-helix transcriptional regulator compare
PFLU_RS31530 -2.2 -1.7 transposase compare
PFLU_RS18505 -2.2 -11.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS13540 -2.1 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS02370 -2.1 -9.8 glycosyltransferase compare
PFLU_RS04015 -2.1 -3.2 1-phosphofructokinase compare
PFLU_RS29880 -2.1 -11.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS31290 -2.1 -2.1 EamA family transporter compare
PFLU_RS24205 -2.1 -2.7 DNA binding protein compare
PFLU_RS27975 -2.1 -4.7 choline ABC transporter ATP-binding protein compare
PFLU_RS21425 -2.0 -2.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS01895 -1.9 -4.8 phosphoribosyl-ATP diphosphatase compare
PFLU_RS29875 -1.9 -12.0 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS19170 -1.9 -4.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS01690 -1.9 -6.9 nitrogen regulation protein NR(II) compare
PFLU_RS12415 -1.9 -6.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS08505 -1.8 -6.2 protease HtpX compare
PFLU_RS29885 -1.8 -9.9 LysR family transcriptional regulator compare
PFLU_RS23045 -1.8 -7.9 beta-ketoacyl-ACP synthase II compare
PFLU_RS06310 -1.8 -7.5 sigma E protease regulator RseP compare
PFLU_RS05690 -1.8 -2.4 Grx4 family monothiol glutaredoxin compare
PFLU_RS00415 -1.8 -2.6 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS24555 -1.8 -4.2 thioredoxin fold domain-containing protein compare
PFLU_RS02625 -1.8 -10.6 ribonuclease R compare
PFLU_RS22105 -1.8 -4.5 cysteine synthase CysM compare
PFLU_RS07230 -1.8 -9.0 RNA polymerase sigma factor RpoE compare
PFLU_RS08185 -1.8 -9.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS25730 -1.7 -12.5 PAS domain S-box protein compare
PFLU_RS04435 -1.7 -7.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS02355 -1.7 -5.3 GNAT family N-acetyltransferase compare
PFLU_RS19165 -1.7 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS06265 -1.6 -13.0 [protein-PII] uridylyltransferase compare
PFLU_RS18755 -1.6 -6.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS28320 -1.6 -4.2 glutathione synthase compare
PFLU_RS18645 -1.6 -2.9 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS08650 -1.6 -2.3 heme exporter protein CcmB compare
PFLU_RS23390 -1.6 -3.0 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS24590 -1.6 -4.3 cytochrome c assembly protein compare
PFLU_RS15410 -1.6 -2.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS02580 -1.5 -10.2 FtsH protease activity modulator HflK compare
PFLU_RS18615 -1.5 -3.3 NADH-quinone oxidoreductase subunit A compare
PFLU_RS04945 -1.5 -3.7 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS14805 -1.5 -2.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS25595 -1.5 -2.7 exodeoxyribonuclease V subunit gamma compare
PFLU_RS18635 -1.5 -3.9 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS02585 -1.5 -6.6 protease modulator HflC compare
PFLU_RS01095 -1.4 -3.8 ribbon-helix-helix protein, CopG family compare
PFLU_RS01585 -1.4 -5.7 oxidative damage protection protein compare
PFLU_RS18395 -1.4 -2.3 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS07725 -1.4 -4.1 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS24090 -1.4 -4.6 Holliday junction branch migration protein RuvA compare
PFLU_RS25740 -1.4 -6.0 polynucleotide adenylyltransferase PcnB compare
PFLU_RS07645 -1.4 -4.0 hypothetical protein compare
PFLU_RS08165 -1.4 -2.4 acyl carrier protein compare
PFLU_RS28470 -1.4 -4.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS30510 -1.4 -4.6 glycosyltransferase family 4 protein compare
PFLU_RS27955 -1.4 -5.6 GlxA family transcriptional regulator compare
PFLU_RS02275 -1.4 -2.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS10765 -1.4 -8.5 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS23585 -1.3 -6.7 GntP family permease compare
PFLU_RS29095 -1.3 -11.9 polyphosphate kinase 1 compare
PFLU_RS18515 -1.3 -2.8 fluoride efflux transporter CrcB compare
PFLU_RS07785 -1.3 -8.3 VacJ family lipoprotein compare
PFLU_RS08670 -1.3 -4.4 heme lyase CcmF/NrfE family subunit compare
PFLU_RS04220 -1.3 -7.2 FadR family transcriptional regulator compare
PFLU_RS17110 -1.3 -5.1 DUF58 domain-containing protein compare
PFLU_RS07275 -1.2 -2.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS24125 -1.2 -5.2 cold-shock protein compare
PFLU_RS04070 -1.2 -3.1 peptide chain release factor 3 compare
PFLU_RS25585 -1.2 -2.8 exodeoxyribonuclease V subunit alpha compare
PFLU_RS00310 -1.2 -2.0 twin transmembrane helix small protein compare
PFLU_RS28895 -1.2 -1.1 DUF2388 domain-containing protein compare
PFLU_RS31010 -1.2 -2.0 transposase compare
PFLU_RS02980 -1.2 -2.0 precorrin-8X methylmutase compare
PFLU_RS11380 -1.2 -1.8 sarcosine oxidase subunit delta compare
PFLU_RS04445 -1.2 -4.6 ABC transporter substrate-binding protein compare
PFLU_RS04430 -1.2 -5.8 ATP-binding cassette domain-containing protein compare
PFLU_RS30505 -1.1 -4.5 hypothetical protein compare
PFLU_RS08160 -1.1 -5.8 sugar transferase compare
PFLU_RS27965 -1.1 -6.1 choline ABC transporter substrate-binding protein compare
PFLU_RS27630 -1.1 -3.8 dethiobiotin synthase compare
PFLU_RS23590 -1.1 -2.0 gluconokinase compare
PFLU_RS24980 -1.1 -2.4 purine-binding chemotaxis protein CheW compare
PFLU_RS30525 -1.0 -6.7 SDR family oxidoreductase compare
PFLU_RS16220 -1.0 -6.0 GlxA family transcriptional regulator compare
PFLU_RS31635 -1.0 -2.6 IS21 family transposase compare
PFLU_RS18585 -1.0 -1.6 high frequency lysogenization protein HflD compare
PFLU_RS29400 -1.0 -1.8 DUF1127 domain-containing protein compare
PFLU_RS06320 -1.0 -2.5 OmpH family outer membrane protein compare
PFLU_RS16780 -1.0 -8.4 glycine betaine/L-proline transporter ProP compare
PFLU_RS18410 -1.0 -2.9 response regulator compare
PFLU_RS22645 -1.0 -7.2 EamA family transporter compare
PFLU_RS27380 -1.0 -7.2 anthranilate synthase component I compare
PFLU_RS02490 -1.0 -6.1 phosphoserine phosphatase SerB compare
PFLU_RS18665 -1.0 -3.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS26595 -1.0 -2.2 lipoprotein compare
PFLU_RS08665 -1.0 -2.4 cytochrome c maturation protein CcmE compare
PFLU_RS04440 -1.0 -5.7 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS18530 -1.0 -2.8 DNA translocase FtsK compare
PFLU_RS02775 -1.0 -1.0 urease accessory protein UreF compare
PFLU_RS21260 -1.0 -3.7 DUF3509 domain-containing protein compare
PFLU_RS16690 -1.0 -1.9 ABC transporter ATP-binding protein compare
PFLU_RS28195 -0.9 -7.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS13750 -0.9 -2.2 hypothetical protein compare
PFLU_RS20335 -0.9 -1.5 hypothetical protein compare
PFLU_RS27650 -0.9 -6.9 biotin synthase BioB compare
PFLU_RS08190 -0.9 -7.4 polysaccharide biosynthesis protein compare
PFLU_RS30530 -0.9 -5.5 acetyltransferase compare
PFLU_RS24690 -0.9 -6.6 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS22395 -0.9 -3.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS26640 -0.9 -6.5 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS11945 -0.9 -2.7 hypothetical protein compare
PFLU_RS00395 -0.9 -6.6 DNA polymerase I compare
PFLU_RS24805 -0.9 -3.3 helix-turn-helix domain-containing protein compare
PFLU_RS24025 -0.9 -5.5 quinolinate synthase NadA compare
PFLU_RS31545 -0.9 -1.4 LysR family transcriptional regulator compare
PFLU_RS27300 -0.9 -7.1 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS01875 -0.9 -1.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS18670 -0.9 -2.0 NADH-quinone oxidoreductase subunit M compare
PFLU_RS19580 -0.9 -2.1 helix-turn-helix transcriptional regulator compare
PFLU_RS25755 -0.9 -2.8 pantoate--beta-alanine ligase compare
PFLU_RS19915 -0.9 -2.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS27635 -0.9 -5.2 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS30520 -0.9 -4.2 ketoacyl-ACP synthase III compare
PFLU_RS08145 -0.9 -4.7 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS04330 -0.9 -7.0 TIGR02099 family protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sucrose in Pseudomonas fluorescens SBW25-INTG

For stress Sucrose across organisms