Experiment set12IT056 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and Glycine betaine (N); with TAPS

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS14715 +1.2 7.5 protein-glutamate O-methyltransferase CheR compare
PFLU_RS17950 +1.1 1.9 hypothetical protein compare
PFLU_RS31840 +1.1 1.6 hypothetical protein compare
PFLU_RS02790 +1.1 1.4 TetR family transcriptional regulator compare
PFLU_RS27985 +0.9 5.7 transcriptional regulator BetI compare
PFLU_RS31835 +0.9 2.2 hypothetical protein compare
PFLU_RS31535 +0.8 2.7 hypothetical protein compare
PFLU_RS25190 +0.8 2.8 hypothetical protein compare
PFLU_RS19910 +0.8 2.1 hypothetical protein compare
PFLU_RS13350 +0.8 1.8 ParD-like family protein compare
PFLU_RS12635 +0.7 2.0 conjugal transfer protein TraR compare
PFLU_RS14775 +0.7 1.1 enoyl-CoA hydratase compare
PFLU_RS11850 +0.7 1.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS23595 +0.7 6.0 LacI family DNA-binding transcriptional regulator compare
PFLU_RS12800 +0.7 1.8 amino acid ABC transporter ATP-binding protein compare
PFLU_RS14330 +0.7 3.2 ABC transporter ATP-binding protein compare
PFLU_RS18595 +0.7 3.3 cupin domain-containing protein compare
PFLU_RS14235 +0.7 3.3 iron transporter compare
PFLU_RS28735 +0.7 4.0 thiol-disulfide isomerase compare
PFLU_RS03100 +0.7 2.0 hypothetical protein compare
PFLU_RS05020 +0.7 1.5 DUF1120 domain-containing protein compare
PFLU_RS13120 +0.7 1.3 hypothetical protein compare
PFLU_RS14335 +0.7 1.9 ABC transporter permease compare
PFLU_RS22375 +0.7 4.4 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS22365 +0.6 3.1 membrane protein compare
PFLU_RS14355 +0.6 1.4 DUF2388 domain-containing protein compare
PFLU_RS14430 +0.6 1.1 arsenate reductase ArsC compare
PFLU_RS13200 +0.6 2.6 Ldh family oxidoreductase compare
PFLU_RS16515 +0.6 1.9 hypothetical protein compare
PFLU_RS25135 +0.6 1.4 hypothetical protein compare
PFLU_RS23675 +0.6 1.8 hypothetical protein compare
PFLU_RS31830 +0.6 1.3 hypothetical protein compare
PFLU_RS20845 +0.6 1.8 hypothetical protein compare
PFLU_RS24535 +0.6 1.7 DUF3509 domain-containing protein compare
PFLU_RS05315 +0.6 2.2 GntR family transcriptional regulator compare
PFLU_RS04005 +0.6 4.1 catabolite repressor/activator compare
PFLU_RS21240 +0.6 1.4 hypothetical protein compare
PFLU_RS14440 +0.6 1.2 hypothetical protein compare
PFLU_RS07525 +0.6 1.5 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS12730 +0.6 2.9 hypothetical protein compare
PFLU_RS10310 +0.6 3.4 SDR family oxidoreductase compare
PFLU_RS28340 +0.6 1.3 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
PFLU_RS29290 +0.6 2.3 hypothetical protein compare
PFLU_RS29250 +0.6 2.2 DUF1289 domain-containing protein compare
PFLU_RS31465 +0.6 3.6 hypothetical protein compare
PFLU_RS09720 +0.6 1.4 single-stranded DNA-binding protein compare
PFLU_RS11760 +0.6 2.0 GlxA family transcriptional regulator compare
PFLU_RS21845 +0.5 4.0 flagellar basal body P-ring protein FlgI compare
PFLU_RS20210 +0.5 2.7 hypothetical protein compare
PFLU_RS29555 +0.5 4.2 HDOD domain-containing protein compare
PFLU_RS11840 +0.5 1.7 RNA polymerase sigma factor compare
PFLU_RS13945 +0.5 1.6 hypothetical protein compare
PFLU_RS04200 +0.5 4.3 cytochrome bc complex cytochrome b subunit compare
PFLU_RS21770 +0.5 3.9 flagellar motor switch protein FliG compare
PFLU_RS23445 +0.5 1.6 DUF1003 domain-containing protein compare
PFLU_RS22335 +0.5 3.9 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS21705 +0.5 3.1 flagellar biosynthesis protein FliQ compare
PFLU_RS11770 +0.5 1.9 type 1 glutamine amidotransferase domain-containing protein compare
PFLU_RS08490 +0.5 0.6 DEAD/DEAH box helicase compare
PFLU_RS04075 +0.5 1.1 hypothetical protein compare
PFLU_RS19665 +0.5 1.4 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS02515 +0.5 1.9 flagellar motor protein MotB compare
PFLU_RS25800 +0.5 3.6 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS30840 +0.5 1.8 hypothetical protein compare
PFLU_RS25570 +0.5 1.6 OmpA family protein compare
PFLU_RS21765 +0.5 3.1 flagellar assembly protein FliH compare
PFLU_RS27420 +0.5 1.4 response regulator transcription factor compare
PFLU_RS19940 +0.5 2.3 type II secretion system ATPase GspE compare
PFLU_RS31615 +0.5 2.1 hypothetical protein compare
PFLU_RS12945 +0.5 1.6 hypothetical protein compare
PFLU_RS23205 +0.5 3.8 flagellar protein FlgN compare
PFLU_RS05910 +0.5 0.8 response regulator transcription factor compare
PFLU_RS10340 +0.5 1.3 hypothetical protein compare
PFLU_RS14195 +0.5 1.5 hypothetical protein compare
PFLU_RS03400 +0.5 1.6 hypothetical protein compare
PFLU_RS00535 +0.5 1.5 DUF1127 domain-containing protein compare
PFLU_RS23885 +0.5 1.6 transposase compare
PFLU_RS00635 +0.5 2.9 TauD/TfdA family dioxygenase compare
PFLU_RS21465 +0.5 2.7 MbtH family protein compare
PFLU_RS09190 +0.5 1.4 hypothetical protein compare
PFLU_RS22325 +0.5 3.2 cytochrome-c oxidase, cbb3-type subunit II compare
PFLU_RS13765 +0.5 1.0 hypothetical protein compare
PFLU_RS20730 +0.5 0.8 hypothetical protein compare
PFLU_RS21795 +0.5 4.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS01765 +0.5 3.6 histidine utilization repressor compare
PFLU_RS23430 +0.5 2.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS09670 +0.5 1.0 integrating conjugative element protein compare
PFLU_RS07540 +0.5 1.0 class II glutamine amidotransferase compare
PFLU_RS13215 +0.5 2.2 LysR family transcriptional regulator compare
PFLU_RS18950 +0.4 3.1 MerR family DNA-binding transcriptional regulator compare
PFLU_RS21830 +0.4 4.1 flagellar hook-associated protein 3 compare
PFLU_RS21725 +0.4 3.1 flagellar motor switch protein FliM compare
PFLU_RS22360 +0.4 3.7 cytochrome c oxidase accessory protein CcoG compare
PFLU_RS21775 +0.4 3.4 flagellar basal body M-ring protein FliF compare
PFLU_RS24020 +0.4 2.2 RDD family protein compare
PFLU_RS31310 +0.4 1.3 phage tail protein compare
PFLU_RS00775 +0.4 1.7 hypothetical protein compare
PFLU_RS23175 +0.4 3.1 flagellar basal body rod protein FlgC compare
PFLU_RS24300 +0.4 2.1 hypothetical protein compare
PFLU_RS25695 +0.4 2.2 ABC transporter substrate-binding protein compare
PFLU_RS30460 +0.4 2.1 L-aspartate oxidase compare
PFLU_RS22665 +0.4 1.8 alanyl-tRNA editing protein compare
PFLU_RS21755 +0.4 2.8 flagella biosynthesis chaperone FliJ compare
PFLU_RS22370 +0.4 3.0 cadmium-translocating P-type ATPase compare
PFLU_RS14970 +0.4 1.2 alpha/beta hydrolase compare
PFLU_RS21850 +0.4 3.5 flagellar basal body L-ring protein FlgH compare
PFLU_RS10670 +0.4 2.4 hypothetical protein compare
PFLU_RS28270 +0.4 1.2 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS14305 +0.4 1.2 sensor histidine kinase compare
PFLU_RS21700 +0.4 2.5 flagellar type III secretion system protein FliR compare
PFLU_RS23165 +0.4 3.8 flagellar hook protein FlgE compare
PFLU_RS18145 +0.4 2.3 aliphatic sulfonate ABC transporter substrate-binding protein compare
PFLU_RS28820 +0.4 1.6 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS15440 +0.4 1.9 nuclear transport factor 2 family protein compare
PFLU_RS12375 +0.4 1.9 hypothetical protein compare
PFLU_RS16910 +0.4 2.1 LysR family transcriptional regulator compare
PFLU_RS25925 +0.4 0.8 RnfH family protein compare
PFLU_RS12650 +0.4 1.1 hypothetical protein compare
PFLU_RS07910 +0.4 0.8 type 1 fimbrial protein compare
PFLU_RS21170 +0.4 2.8 class II fumarate hydratase compare
PFLU_RS21760 +0.4 3.4 flagellar protein export ATPase FliI compare
PFLU_RS21820 +0.4 3.1 flagellin compare
PFLU_RS00070 +0.4 0.7 tetratricopeptide repeat protein compare
PFLU_RS14740 +0.4 2.8 response regulator compare
PFLU_RS04660 +0.4 2.1 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS30645 +0.4 1.0 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS00410 +0.4 2.7 cytochrome c4 compare
PFLU_RS23195 +0.4 3.4 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS03480 +0.4 1.9 heavy metal response regulator transcription factor compare
PFLU_RS25270 +0.4 2.5 alpha/beta fold hydrolase compare
PFLU_RS11000 +0.4 1.7 cysteine dioxygenase compare
PFLU_RS10205 +0.4 3.2 acyltransferase family protein compare
PFLU_RS22320 +0.4 3.5 cytochrome-c oxidase, cbb3-type subunit I compare
PFLU_RS28845 +0.4 2.0 peroxiredoxin compare
PFLU_RS21525 +0.4 2.7 RNA polymerase factor sigma-70 compare
PFLU_RS17455 +0.4 2.4 saccharopine dehydrogenase family protein compare
PFLU_RS22165 +0.4 2.5 GntR family transcriptional regulator compare
PFLU_RS09620 +0.4 2.2 2-keto-4-pentenoate hydratase compare
PFLU_RS23180 +0.4 2.7 flagellar basal body rod protein FlgB compare
PFLU_RS11340 +0.4 1.9 RraA family protein compare
PFLU_RS14520 +0.4 1.6 hypothetical protein compare
PFLU_RS03125 +0.4 2.3 DUF4136 domain-containing protein compare
PFLU_RS18420 +0.4 1.0 hypothetical protein compare
PFLU_RS30675 +0.4 2.5 integrase compare
PFLU_RS00060 +0.4 1.7 DNA-3-methyladenine glycosylase I compare
PFLU_RS10260 +0.4 2.6 undecaprenyl-phosphate glucose phosphotransferase compare
PFLU_RS30890 +0.4 1.8 hypothetical protein compare
PFLU_RS12950 +0.4 2.3 hypothetical protein compare
PFLU_RS22530 +0.4 1.6 DUF469 domain-containing protein compare
PFLU_RS14490 +0.4 2.0 nitronate monooxygenase compare
PFLU_RS11170 +0.4 2.6 FadR family transcriptional regulator compare
PFLU_RS01320 +0.4 2.5 phosphoenolpyruvate carboxykinase compare
PFLU_RS02510 +0.4 3.0 flagellar motor stator protein MotA compare
PFLU_RS04415 +0.4 1.5 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS08260 +0.4 1.7 CHAD domain-containing protein compare
PFLU_RS31370 +0.4 1.8 hypothetical protein compare
PFLU_RS12805 +0.4 1.2 RidA family protein compare
PFLU_RS21800 +0.4 2.1 flagellar assembly protein FliT compare
PFLU_RS04715 +0.4 1.8 D-alanine--D-alanine ligase compare
PFLU_RS17030 +0.4 1.6 cysteine hydrolase compare
PFLU_RS19900 +0.4 1.4 general secretion pathway protein GspM compare
PFLU_RS31650 +0.4 1.0 hypothetical protein compare
PFLU_RS04135 +0.4 2.7 HAMP domain-containing histidine kinase compare
PFLU_RS15165 +0.4 1.1 RidA family protein compare
PFLU_RS10860 +0.3 1.6 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS14070 +0.3 1.7 NlpC/P60 family protein compare
PFLU_RS22180 +0.3 2.0 hypothetical protein compare
PFLU_RS09690 +0.3 1.7 pili assembly chaperone compare
PFLU_RS09945 +0.3 1.3 catalase family protein compare
PFLU_RS26690 +0.3 1.3 hypothetical protein compare
PFLU_RS10115 +0.3 1.7 FMN reductase compare
PFLU_RS21660 +0.3 2.8 RNA polymerase sigma factor FliA compare
PFLU_RS25225 +0.3 2.4 disulfide bond formation protein B compare
PFLU_RS12840 +0.3 1.3 3-hydroxybutyrate dehydrogenase compare
PFLU_RS00445 +0.3 1.0 hypothetical protein compare
PFLU_RS26525 +0.3 3.3 hybrid sensor histidine kinase/response regulator compare
PFLU_RS30340 +0.3 1.1 hypothetical protein compare
PFLU_RS22380 +0.3 1.7 sulfite exporter TauE/SafE family protein compare
PFLU_RS20095 +0.3 1.3 glyoxalase compare
PFLU_RS25040 +0.3 0.9 DUF3077 domain-containing protein compare
PFLU_RS21710 +0.3 2.0 flagellar type III secretion system pore protein FliP compare
PFLU_RS24635 +0.3 1.9 L,D-transpeptidase family protein compare
PFLU_RS16360 +0.3 1.4 hypothetical protein compare
PFLU_RS28020 +0.3 1.7 ATP-dependent RNA helicase DbpA compare
PFLU_RS07885 +0.3 1.8 MFS transporter compare
PFLU_RS19020 +0.3 2.6 fimbrial major subunit CsuA/B family protein compare
PFLU_RS18975 +0.3 2.4 gamma-carboxygeranoyl-CoA hydratase compare
PFLU_RS30630 +0.3 0.4 hypothetical protein compare
PFLU_RS20715 +0.3 0.7 iron ABC transporter permease compare
PFLU_RS23555 +0.3 1.9 DUF4440 domain-containing protein compare
PFLU_RS21810 +0.3 3.0 flagellar filament capping protein FliD compare
PFLU_RS17930 +0.3 1.6 UDP-glucose/GDP-mannose dehydrogenase family protein compare
PFLU_RS16445 +0.3 1.2 PIG-L family deacetylase compare
PFLU_RS09995 +0.3 2.2 ABC transporter ATP-binding protein compare
PFLU_RS26165 +0.3 1.1 hypothetical protein compare
PFLU_RS31405 +0.3 2.1 hypothetical protein compare
PFLU_RS16290 +0.3 1.1 hypothetical protein compare
PFLU_RS30660 +0.3 1.1 histidine phosphatase family protein compare
PFLU_RS07695 +0.3 1.2 beta-N-acetylhexosaminidase compare
PFLU_RS29255 +0.3 1.0 iron donor protein CyaY compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sucrose in Pseudomonas fluorescens SBW25-INTG

For stress Sucrose across organisms