Experiment set12IT054 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

MoYLS4 with electrocompetent cells (sucrose treatment)+shock

200 most detrimental genes:

  gene name fitness t score description  
DVU1210 +1.3 0.9 conserved hypothetical protein (TIGR) compare
DVU2454 +1.3 0.9 hypothetical protein (TIGR) compare
DVU3277 +1.3 0.9 hypothetical protein (TIGR) compare
DVU0802 +1.2 1.4 hypothetical protein (TIGR) compare
DVU2200 +1.1 1.6 hypothetical protein (TIGR) compare
DORF9585 +1.0 1.3 no description compare
DVU0459 +1.0 0.8 hypothetical protein (TIGR) compare
DVUA0089 +0.9 0.7 hypothetical protein (TIGR) compare
DVU0232 +0.8 1.0 hypothetical protein (TIGR) compare
DVU0302 +0.8 3.2 chemotaxis protein CheX, putative (TIGR) compare
DVU0008 +0.7 0.6 hypothetical protein (TIGR) compare
DVU0024 +0.7 0.9 conserved hypothetical protein (TIGR) compare
DVU3364 +0.7 3.0 conserved hypothetical protein (TIGR) compare
DVU1726 +0.7 1.5 hypothetical protein (TIGR) compare
DVU1033 cinA +0.7 0.6 competence/damage-inducible protein CinA protein, truncation (TIGR) compare
DVU1420 +0.7 1.1 Hpt domain protein (TIGR) compare
DVU0690 +0.7 2.7 conserved hypothetical protein (TIGR) compare
DVU2473 +0.7 0.6 hypothetical protein (TIGR) compare
DVU2345 +0.7 1.4 hypothetical protein (TIGR) compare
DVU2115 +0.7 1.3 hypothetical protein (TIGR) compare
DVU3215 drrA +0.7 1.0 response regulator (TIGR) compare
DVU2578 +0.7 5.0 response regulator (TIGR) compare
DVU1133 +0.7 2.4 hypothetical protein (TIGR) compare
DVU3177 +0.7 5.2 hypothetical protein (TIGR) compare
DVU0595 +0.6 2.7 conserved hypothetical protein (TIGR) compare
DVU2577 +0.6 2.9 DNA-binding response regulator, LuxR family (TIGR) compare
DVUA0080 +0.6 0.7 glycosyl transferase, group 2 family protein (TIGR) compare
DVU1434 +0.6 0.5 hypothetical protein (TIGR) compare
DVU2649 +0.6 1.6 hypothetical protein (TIGR) compare
DVU0899 +0.6 1.0 conserved hypothetical protein (TIGR) compare
DVU2096 +0.6 1.7 hypothetical protein (TIGR) compare
DVU1188 +0.6 1.9 hypothetical protein (TIGR) compare
DVU3393 +0.6 0.9 hypothetical protein (TIGR) compare
DVU0376 +0.5 0.9 hypothetical protein (TIGR) compare
DVU1630 ptsN +0.5 0.7 PTS system, IIA component (TIGR) compare
DVU0620 +0.5 0.7 endoribonuclease, L-PSP family (TIGR) compare
DVU0937 +0.5 2.9 hypothetical protein (TIGR) compare
DVU1253 +0.5 1.7 hypothetical protein (TIGR) compare
DVU1827 +0.5 3.1 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein (TIGR) compare
DVU3339.1 kdpF +0.5 2.4 potassium-transporting ATPase, KdpF subunit (TIGR) compare
DVU1842 +0.5 0.8 lipoprotein, putative (TIGR) compare
DVU1491 +0.5 1.2 conserved hypothetical protein (TIGR) compare
DVU1900 +0.5 2.6 conserved hypothetical protein (TIGR) compare
DVU0234 +0.5 2.3 hypothetical protein (TIGR) compare
DVU1632 +0.5 2.3 PTS system, IIA component (TIGR) compare
DVU2539 +0.5 0.5 hypothetical protein (TIGR) compare
DVU0586 +0.5 1.4 hypothetical protein (TIGR) compare
DVU1255 +0.5 1.2 Sua5/YciO/YrdC/YwlC family protein (TIGR) compare
DVU1369 +0.5 1.0 hypothetical protein (TIGR) compare
DVU3009 +0.5 3.6 radical SAM domain protein (TIGR) compare
DVU1946 oorB +0.5 2.9 pyruvate ferredoxin oxidoreductase, beta subunit, putative (TIGR) compare
DVU0906 lipB +0.5 1.9 lipoate-protein ligase B (TIGR) compare
DVU_tRNA-Ala-5 tRNA-Ala +0.5 0.4 tRNA with anticodon CGC for Ala (VIMSS-AUTO) compare
DVU0215 +0.5 3.4 tail protein, putative (TIGR) compare
DVU2034 +0.4 1.4 hypothetical protein (TIGR) compare
DVU2915 +0.4 3.4 hypothetical protein (TIGR) compare
DORF25047 +0.4 2.2 no description compare
DVU0787 +0.4 0.6 hypothetical protein (TIGR) compare
DVU1859 +0.4 0.6 hypothetical protein (TIGR) compare
DVU1737 +0.4 1.3 conserved hypothetical protein (TIGR) compare
DVU0305 fd II +0.4 1.4 ferredoxin II (Sean Caffrey) compare
DVU2548 acpD +0.4 2.6 acyl carrier protein phosphodiesterase (TIGR) compare
DORF26828 +0.4 1.5 SEED: FIG00605560: hypothetical protein compare
DVU2333 ndk +0.4 1.8 nucleoside diphosphate kinase (TIGR) compare
DVU1351 +0.4 1.0 membrane protein, MarC family (TIGR) compare
DVU3180 +0.4 3.5 GGDEF domain protein (TIGR) compare
DVU0773 +0.4 0.7 hypothetical protein (TIGR) compare
DVU2715 +0.4 1.2 conserved hypothetical protein (TIGR) compare
DVU0340 +0.4 1.8 acetyltransferase, CysE/LacA/LpxA/NodL family (TIGR) compare
DVU3310 deaD +0.4 2.7 ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) compare
DVU1082 +0.4 2.1 3- 5 exonuclease domain protein (TIGR) compare
DVU1099 +0.4 2.4 tail fiber assembly protein, putative (TIGR) compare
DVU1257 +0.4 0.9 RNA-binding protein (TIGR) compare
DVU1162 +0.4 0.8 hypothetical protein (TIGR) compare
DVU3325 +0.4 0.9 hypothetical protein (TIGR) compare
DVU0511 +0.4 0.8 conserved hypothetical protein (TIGR) compare
DVU1844 +0.4 0.2 septum formation initiator family protein (TIGR) compare
DVU3223 aspB +0.4 2.7 aspartate aminotransferase (TIGR) compare
DVU2720 +0.4 1.0 hypothetical protein (TIGR) compare
DVU0726 tgt +0.4 2.8 queuine tRNA-ribosyltransferase (TIGR) compare
DVU2712 +0.4 1.1 hypothetical protein (TIGR) compare
DVU0033 +0.4 2.1 isochorismatase family protein (TIGR) compare
DVU0532 hmcE +0.4 1.3 HmcE, 25.3 kd protein in hmc operon (voordouw) compare
DORF46408 +0.4 0.7 no description compare
DVU0451 +0.4 2.8 chloride channel family protein (TIGR) compare
DORF10446 +0.4 2.0 SEED: FIG00604570: hypothetical protein compare
DVU1124 +0.4 1.6 hypothetical protein (TIGR) compare
DORF43274 +0.4 1.3 no description compare
DORF41147 +0.4 0.4 no description compare
DVU0159 +0.4 2.1 thioesterase family protein (TIGR) compare
DVU2009 +0.4 0.7 conserved domain protein (TIGR) compare
DVU2498 +0.4 1.2 hypothetical protein (TIGR) compare
DVU1736 +0.4 2.2 hypothetical protein (TIGR) compare
DVU0359 +0.4 2.1 HesB-like domain (TIGR) compare
DVU0859 +0.4 2.7 hypothetical protein (TIGR) compare
DVU0035 +0.4 0.8 hypothetical protein (TIGR) compare
DVU3351 queA +0.4 3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (TIGR) compare
DVU1380 +0.4 1.6 hypothetical protein (TIGR) compare
DVU2620 +0.4 2.6 conserved hypothetical protein (TIGR) compare
DVU1891 +0.4 2.1 conserved hypothetical protein (TIGR) compare
DVU2670 +0.4 1.3 hypothetical protein (TIGR) compare
DVU1040 hisB +0.4 0.4 imidazoleglycerol-phosphate dehydratase (TIGR) compare
DVU1914 +0.4 2.3 (R)-citramalate synthase (EC 2.3.3.21) (from data) compare
DVU0214 +0.4 1.3 tail/DNA circulation protein, putative (TIGR) compare
DVU0975 +0.4 1.0 conserved hypothetical protein (TIGR) compare
DVU2232 +0.4 1.9 hypothetical protein (TIGR) compare
DVU2863 +0.4 0.4 hypothetical protein (TIGR) compare
DVU0590 +0.4 1.4 hypothetical protein (TIGR) compare
DVU2332 proC +0.4 0.6 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
DVU1338 +0.4 1.0 conserved hypothetical protein (TIGR) compare
DVU1421 +0.4 0.4 hypothetical protein (TIGR) compare
DVU2740 livF +0.4 1.6 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU3046 +0.3 1.7 glycosyl transferase, group 1 family protein (TIGR) compare
DVU2022 +0.3 2.8 conserved hypothetical protein (TIGR) compare
DVU0443 +0.3 1.6 exonuclease, putative (Keith Keller) compare
DVU0790 +0.3 1.7 radical SAM protein, TIGR01212 family (TIGR) compare
DVU0655 +0.3 1.7 PHP domain protein (TIGR) compare
DVU1692 +0.3 1.5 hypothetical protein (TIGR) compare
DVU1996 +0.3 0.8 quaternary ammonium compound-resistance protein QacC, putative (TIGR) compare
DORF526 +0.3 1.4 SEED: FIG00606858: hypothetical protein compare
DVU0603 +0.3 1.1 hypothetical protein (TIGR) compare
DVU3304 +0.3 2.4 SEED: integral membrane sensor signal transduction histidine kinase compare
DORF17147 +0.3 1.4 SEED: TPR domain protein compare
DVU0507 +0.3 0.6 conserved hypothetical protein (TIGR) compare
DVU0244 +0.3 1.7 hypothetical protein (TIGR) compare
DVU1962 +0.3 2.5 methyl-accepting chemotaxis protein (TIGR) compare
DVU2151 +0.3 1.5 conserved hypothetical protein (TIGR) compare
DVU0479 +0.3 1.8 serine/threonine protein kinase, putative (TIGR) compare
DVU0542 +0.3 0.9 universal stress protein family (TIGR) compare
DVU1128 +0.3 1.6 lysozyme, putative (TIGR) compare
DVU2161 +0.3 1.4 hypothetical protein (TIGR) compare
DVU2427 +0.3 1.7 hypothetical protein (TIGR) compare
DVU1816 +0.3 1.5 conserved hypothetical protein (TIGR) compare
DVU1586 ccmG +0.3 1.8 thioredoxin family protein (TIGR) compare
DVU0243 +0.3 2.2 lipoprotein, putative (TIGR) compare
DVU0103 fepC +0.3 2.2 cation ABC transporter, ATP-binding protein, putative (TIGR) compare
DVU1786 +0.3 1.1 GGDEF domain protein (TIGR) compare
DVU2479 pstA-2 +0.3 1.8 phosphate ABC transporter, permease protein, putative (TIGR) compare
DVU0454 +0.3 1.6 hypothetical protein (TIGR) compare
DVU1510 +0.3 0.4 hypothetical protein (TIGR) compare
DVU1129 +0.3 1.4 conserved hypothetical protein (TIGR) compare
DVU1780 +0.3 1.5 conserved hypothetical protein (TIGR) compare
DVU2972 +0.3 1.1 chemotaxis protein CheD, putative (TIGR) compare
DVU1817 cyf +0.3 0.9 cytochrome c-553 (TIGR) compare
DVU2451 +0.3 2.1 L-lactate permease family protein (TIGR) compare
DVU1595 cheR-1 +0.3 1.6 chemotaxis protein methyltransferase (TIGR) compare
DVU1175 +0.3 0.5 hypothetical protein (TIGR) compare
DVU1135 +0.3 0.6 conserved domain protein (TIGR) compare
DVU2624 +0.3 0.9 hypothetical protein (TIGR) compare
DVU2167 +0.3 0.8 hypothetical protein (TIGR) compare
DVU1762 +0.3 0.7 membrane protein, putative (TIGR) compare
DVU0982 +0.3 1.2 PHP domain protein (TIGR) compare
DVU1598 +0.3 1.0 conserved hypothetical protein (TIGR) compare
DVU2293 cooF +0.3 0.3 iron-sulfur protein CooF (TIGR) compare
DVU2203 +0.3 0.8 endoribonuclease, L-PSP family (TIGR) compare
DVU2677 +0.3 2.1 sensor histidine kinase/response regulator (TIGR) compare
DVU0909 +0.3 1.1 hypothetical protein (TIGR) compare
DVU0630 +0.3 0.6 hypothetical protein (TIGR) compare
DVU1943 +0.3 0.8 hypothetical protein (TIGR) compare
DVU2986 pspC +0.3 1.7 phage shock protein C (TIGR) compare
DVU0903 +0.3 1.4 HD domain protein (TIGR) compare
DVU2833 +0.3 2.1 hypothetical protein (TIGR) compare
DVU0071 dinP +0.3 2.3 DNA polymerase IV (TIGR) compare
DVU0593 LysE +0.3 1.4 L-lysine exporter, putative (TIGR) compare
DVUA0105 +0.3 1.1 conserved hypothetical protein (TIGR) compare
DVU2809 +0.3 1.2 cytochrome c3 (TIGR) compare
DVU2641 +0.3 1.5 lipoprotein, putative (TIGR) compare
DVU0016 +0.3 0.3 hypothetical protein (TIGR) compare
DVU1669 rluB +0.3 1.0 ribosomal large subunit pseudouridine synthase B (TIGR) compare
DVU2946 +0.3 1.2 hypothetical protein (TIGR) compare
DVU3006 spsF +0.3 1.5 polysaccharide biosynthesis protein/methyltransferase, putative (TIGR) compare
DORF35977 +0.3 1.5 no description compare
DORF19118 +0.3 1.3 SEED: FIG00606735: hypothetical protein compare
DVU2723 +0.3 2.0 tail protein, putative (TIGR) compare
DVU0379 +0.3 1.0 transcriptional regulator, putative (TIGR) compare
DVU2947 +0.3 1.3 anaerobic ribonucleoside-triphosphate reductase, putative (TIGR) compare
DVU0382 +0.3 1.2 hypothetical protein (TIGR) compare
DVUA0103 invX +0.3 1.3 type III secretion protein, HrpO family (TIGR) compare
DVU3135 mdaB +0.3 1.4 flavodoxin-like fold domain protein (TIGR) compare
DVU0639 pomB +0.3 1.7 chemotaxis protein PomB (TIGR) compare
DVU2877 +0.3 1.5 hypothetical protein (TIGR) compare
DVU2760 +0.3 0.9 hypothetical protein (TIGR) compare
DVU2174 +0.3 1.5 hypothetical protein (TIGR) compare
DVU2918 +0.3 0.9 hypothetical protein (TIGR) compare
DVUA0047 +0.3 1.4 hypothetical protein (TIGR) compare
DVUA0149 +0.3 1.6 hypothetical protein (TIGR) compare
DVUA0081 +0.3 0.4 glycosyl transferase, group 1/2 family protein (TIGR) compare
DVU1600 +0.3 1.8 adenylate cyclase (TIGR) compare
DVU1974 +0.3 1.2 pyridine nucleotide-disulfide oxidoreductase (TIGR) compare
DVU2939 +0.3 1.5 conserved hypothetical protein (TIGR) compare
DVU0934 +0.3 0.9 hypothetical protein (TIGR) compare
DVU2909 +0.3 2.2 transcriptional regulator, MarR family (TIGR) compare
DVU0364 pabA +0.3 1.4 para-aminobenzoate/anthranilate synthase glutamine amidotransferase (TIGR) compare
DVU3251 +0.3 1.4 nitrite transporter, HPP family (from data) compare
DVU2598 +0.3 1.3 hypothetical protein (TIGR) compare
DVU1557 +0.3 0.7 hypothetical protein (TIGR) compare
DVU1218 +0.3 1.6 conserved hypothetical protein (TIGR) compare
DVU3327 +0.3 1.7 multidrug resistance protein, Smr family (TIGR) compare
DVU2528 +0.3 0.5 hypothetical protein (TIGR) compare
DVU3395 +0.3 1.8 peptidase, M23/M37 family (TIGR) compare


Specific Phenotypes

None in this experiment

For Desulfovibrio vulgaris Hildenborough JW710 in stress experiments

For stress sucrose treatment across organisms