Experiment set12IT052 for Herbaspirillum seropedicae SmR1
Parafilmed volatile agar plate with no fungus
Group: agar plate interaction controlMedia: LB
Culturing: HerbieS_ML4a, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 17-Aug-21
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 3 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Folate Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Pyrimidine metabolism
- Nicotinate and nicotinamide metabolism
- Biosynthesis of alkaloids derived from histidine and purine
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| NAD salvage pathway III (to nicotinamide riboside) | 3 | 2 | 1 |
| UTP and CTP dephosphorylation I | 7 | 5 | 2 |
| purine nucleotides degradation II (aerobic) | 11 | 8 | 3 |
| guanosine nucleotides degradation II | 4 | 3 | 1 |
| guanosine nucleotides degradation III | 4 | 3 | 1 |
| inosine 5'-phosphate degradation | 4 | 3 | 1 |
| adenosine nucleotides degradation I | 8 | 5 | 2 |
| purine nucleotides degradation I (plants) | 12 | 7 | 3 |
| guanosine nucleotides degradation I | 4 | 2 | 1 |
| adenosine nucleotides degradation II | 5 | 4 | 1 |
| superpathway of purines degradation in plants | 18 | 9 | 3 |
| superpathway of guanosine nucleotides degradation (plants) | 6 | 3 | 1 |
| ureide biosynthesis | 7 | 5 | 1 |
| tunicamycin biosynthesis | 9 | 1 | 1 |
| NAD salvage (plants) | 11 | 6 | 1 |