Experiment set12IT048 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM

200 most important genes:

  gene name fitness t score description  
BWI76_RS00965 -4.7 -2.2 acetolactate synthase 2 small subunit compare
BWI76_RS25220 -4.5 -5.3 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS18130 -4.4 -4.8 zinc ABC transporter substrate-binding protein compare
BWI76_RS21070 -4.0 -2.8 outer membrane protein assembly factor BamB compare
BWI76_RS00345 -3.6 -4.9 protein disulfide oxidoreductase DsbA compare
BWI76_RS26455 -3.6 -4.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS25230 -3.5 -6.2 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS23360 -3.4 -4.6 diaminopimelate decarboxylase compare
BWI76_RS09755 -3.4 -10.0 phosphoserine transaminase compare
BWI76_RS25225 -3.4 -9.8 ABC transporter permease compare
BWI76_RS26570 -3.3 -5.0 anion permease compare
BWI76_RS24400 -3.3 -7.8 outer membrane channel protein TolC compare
BWI76_RS04470 -3.2 -9.9 carbamoyl phosphate synthase large subunit compare
BWI76_RS06780 -3.2 -6.6 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS20895 -3.1 -6.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS06775 -3.1 -8.6 multidrug efflux RND transporter permease subunit compare
BWI76_RS23920 -3.1 -6.3 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04465 -3.1 -5.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS00855 -3.0 -8.2 argininosuccinate lyase compare
BWI76_RS18135 -3.0 -5.0 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS25115 -3.0 -9.9 argininosuccinate synthase compare
BWI76_RS20650 -3.0 -2.9 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS26460 -3.0 -5.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS05015 -3.0 -2.7 transcriptional regulator compare
BWI76_RS07070 -2.9 -4.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS23230 -2.9 -3.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS04160 -2.8 -5.5 phosphoserine phosphatase compare
BWI76_RS25215 -2.8 -5.0 phospholipid-binding protein MlaC compare
BWI76_RS20965 -2.7 -6.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS22805 -2.7 -11.3 GTP diphosphokinase compare
BWI76_RS20475 -2.7 -6.4 phospholipid-binding lipoprotein MlaA compare
BWI76_RS18140 -2.7 -4.2 zinc ABC transporter permease compare
BWI76_RS01210 -2.6 -2.0 tyrosine recombinase XerC compare
BWI76_RS05200 -2.6 -3.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS09660 -2.6 -1.8 DNA translocase FtsK compare
BWI76_RS23480 -2.5 -10.6 EAL domain-containing protein compare
BWI76_RS00845 -2.5 -7.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS02530 -2.5 -2.5 tRNA dimethylallyltransferase compare
BWI76_RS00400 -2.5 -2.4 glutamine synthetase compare
BWI76_RS19845 -2.5 -10.6 phosphatase compare
BWI76_RS04255 -2.4 -8.2 threonine synthase compare
BWI76_RS19495 -2.4 -1.9 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS21265 -2.4 -13.9 phosphoribosylformylglycinamidine synthase compare
BWI76_RS05840 -2.4 -5.6 glutamate 5-kinase compare
BWI76_RS27310 -2.4 -7.6 glycosyltransferase compare
BWI76_RS18930 -2.4 -5.0 histidinol-phosphate transaminase compare
BWI76_RS01615 -2.4 -10.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS17975 -2.3 -4.6 tail-specific protease compare
BWI76_RS00850 -2.3 -6.5 acetylglutamate kinase compare
BWI76_RS17720 -2.3 -1.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS23885 -2.2 -2.1 2-octaprenylphenol hydroxylase compare
BWI76_RS03010 -2.2 -8.1 ornithine carbamoyltransferase compare
BWI76_RS17000 -2.2 -7.2 Fe-S cluster assembly scaffold SufA compare
BWI76_RS08530 -2.2 -2.3 protein TolA compare
BWI76_RS12855 -2.1 -2.2 enamine deaminase RidA compare
BWI76_RS05835 -2.1 -2.9 gamma-glutamyl-phosphate reductase compare
BWI76_RS23240 -2.1 -3.7 exonuclease V subunit gamma compare
BWI76_RS18940 -2.1 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS22690 -2.0 -3.9 adenylyl-sulfate kinase compare
BWI76_RS18950 -2.0 -2.4 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS02410 -2.0 -1.4 EF-P beta-lysylation protein EpmB compare
BWI76_RS20350 -2.0 -4.7 amidophosphoribosyltransferase compare
BWI76_RS20380 -2.0 -1.8 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS06765 -2.0 -3.7 transcriptional regulator compare
BWI76_RS01610 -1.9 -8.0 phosphoribosylamine--glycine ligase compare
BWI76_RS00805 -1.9 -3.2 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS09760 -1.9 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS08385 -1.9 -3.0 citrate (Si)-synthase compare
BWI76_RS18935 -1.9 -5.3 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS23220 -1.9 -7.6 amino-acid N-acetyltransferase compare
BWI76_RS00975 -1.8 -7.8 dihydroxy-acid dehydratase compare
BWI76_RS04250 -1.8 -5.6 homoserine kinase compare
BWI76_RS21350 -1.8 -2.2 anti-RNA polymerase sigma factor SigE compare
BWI76_RS04305 -1.8 -1.4 molecular chaperone DnaJ compare
BWI76_RS04515 -1.7 -2.0 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS15825 -1.7 -1.3 hypothetical protein compare
BWI76_RS04670 -1.7 -8.0 3-isopropylmalate dehydratase large subunit compare
BWI76_RS18925 -1.7 -4.7 histidinol dehydrogenase compare
BWI76_RS00835 -1.6 -8.2 phosphoenolpyruvate carboxylase compare
BWI76_RS20355 -1.6 -2.5 colicin V production protein compare
BWI76_RS09970 -1.6 -0.7 porin OmpA compare
BWI76_RS26620 -1.6 -1.6 Fe-S biogenesis protein NfuA compare
BWI76_RS16980 -1.6 -5.2 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS00940 -1.5 -4.6 transcriptional regulator HdfR compare
BWI76_RS27430 -1.5 -1.9 (p)ppGpp synthetase compare
BWI76_RS04665 -1.5 -11.0 3-isopropylmalate dehydratase small subunit compare
BWI76_RS18385 -1.5 -1.7 hypothetical protein compare
BWI76_RS11845 -1.5 -4.4 tryptophan synthase subunit beta compare
BWI76_RS26085 -1.5 -1.9 3-dehydroquinate synthase compare
BWI76_RS26665 -1.5 -3.0 DNA-binding response regulator compare
BWI76_RS09255 -1.5 -2.2 hypothetical protein compare
BWI76_RS16000 -1.5 -1.6 multidrug transporter subunit MdtI compare
BWI76_RS26200 -1.5 -7.5 starch synthase compare
BWI76_RS04680 -1.4 -8.7 2-isopropylmalate synthase compare
BWI76_RS00240 -1.4 -2.9 FMN-binding protein MioC compare
BWI76_RS11840 -1.4 -4.0 tryptophan synthase subunit alpha compare
BWI76_RS04675 -1.4 -6.1 3-isopropylmalate dehydrogenase compare
BWI76_RS00960 -1.4 -5.3 acetolactate synthase 2 catalytic subunit compare
BWI76_RS11275 -1.4 -7.2 sensor protein PhoQ compare
BWI76_RS05260 -1.4 -2.2 chaperone compare
BWI76_RS00970 -1.3 -3.1 branched chain amino acid aminotransferase compare
BWI76_RS21375 -1.3 -1.7 autonomous glycyl radical cofactor GrcA compare
BWI76_RS01330 -1.3 -2.2 twin-arginine translocase subunit TatC compare
BWI76_RS21345 -1.3 -1.3 sigma-E factor regulatory protein RseB compare
BWI76_RS16215 -1.3 -4.7 hypothetical protein compare
BWI76_RS21580 -1.3 -1.6 SsrA-binding protein compare
BWI76_RS20435 -1.3 -0.8 chorismate synthase compare
BWI76_RS16990 -1.3 -3.9 ABC transporter ATP-binding protein compare
BWI76_RS04245 -1.3 -7.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00990 -1.3 -5.7 ketol-acid reductoisomerase compare
BWI76_RS05570 -1.2 -1.4 hypothetical protein compare
BWI76_RS27305 -1.2 -4.7 glycosyl transferase compare
BWI76_RS00980 -1.2 -7.9 PLP-dependent threonine dehydratase compare
BWI76_RS17980 -1.2 -2.4 RNA chaperone ProQ compare
BWI76_RS05450 -1.2 -1.0 ribonuclease HI compare
BWI76_RS16975 -1.2 -4.5 cysteine desufuration protein SufE compare
BWI76_RS19805 -1.2 -3.9 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS01655 -1.2 -6.0 homoserine O-succinyltransferase compare
BWI76_RS16490 -1.2 -2.2 glutaredoxin compare
BWI76_RS27440 -1.2 -2.8 DNA helicase RecG compare
BWI76_RS11860 -1.2 -5.3 anthranilate synthase component I compare
BWI76_RS26670 -1.2 -6.9 two-component sensor histidine kinase compare
BWI76_RS04645 -1.2 -5.3 3-dehydroquinase compare
BWI76_RS08525 -1.2 -2.2 colicin transporter compare
BWI76_RS13955 -1.2 -2.1 hypothetical protein compare
BWI76_RS19850 -1.2 -2.7 tRNA-Pro compare
BWI76_RS06770 -1.2 -6.0 Hha toxicity attenuator compare
BWI76_RS09515 -1.2 -3.0 arginine ABC transporter substrate-binding protein compare
BWI76_RS16485 -1.2 -1.8 ribonuclease T compare
BWI76_RS01200 -1.2 -1.5 diaminopimelate epimerase compare
BWI76_RS20880 -1.1 -2.1 esterase compare
BWI76_RS11850 -1.1 -5.5 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS27275 -1.1 -6.1 hypothetical protein compare
BWI76_RS16995 -1.1 -4.3 Fe-S cluster assembly protein SufB compare
BWI76_RS04685 -1.1 -6.3 putative leucine operon leader peptide compare
BWI76_RS04240 -1.1 -1.9 thr operon leader peptide compare
BWI76_RS01135 -1.1 -3.8 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS26000 -1.0 -3.5 aspartate aminotransferase family protein compare
BWI76_RS26075 -1.0 -2.6 DNA adenine methylase compare
BWI76_RS06525 -1.0 -4.4 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS18955 -1.0 -4.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS23365 -1.0 -3.0 LysR family transcriptional regulator compare
BWI76_RS21475 -1.0 -4.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS17945 -1.0 -1.6 hypothetical protein compare
BWI76_RS18920 -1.0 -1.5 ATP phosphoribosyltransferase compare
BWI76_RS26485 -1.0 -4.3 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
BWI76_RS10465 -1.0 -2.4 hypothetical protein compare
BWI76_RS19325 -1.0 -1.8 mandelate racemase compare
BWI76_RS07845 -1.0 -2.9 LacI family transcriptional regulator compare
BWI76_RS23930 -1.0 -4.4 transcriptional regulator ArgP compare
BWI76_RS10835 -1.0 -1.3 hypothetical protein compare
BWI76_RS18270 -1.0 -2.0 hypothetical protein compare
BWI76_RS12745 -1.0 -2.1 putative prophage membrane protein compare
BWI76_RS26390 -1.0 -3.5 cell division protein FtsX compare
BWI76_RS07730 -1.0 -1.3 iron-enterobactin transporter membrane protein compare
BWI76_RS20740 -1.0 -1.9 coproporphyrinogen III oxidase compare
BWI76_RS22625 -0.9 -1.8 transcriptional regulator compare
BWI76_RS06735 -0.9 -1.7 50S ribosomal protein L31 compare
BWI76_RS27385 -0.9 -3.6 orotate phosphoribosyltransferase compare
BWI76_RS01080 -0.9 -4.4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS24280 -0.9 -3.9 biopolymer transporter ExbB compare
BWI76_RS18605 -0.9 -1.1 oxidoreductase molybdopterin-binding protein compare
BWI76_RS20735 -0.9 -3.0 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS13595 -0.9 -3.4 transcriptional regulator compare
BWI76_RS21165 -0.9 -1.6 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS16515 -0.9 -1.9 LysR family transcriptional regulator compare
BWI76_RS24275 -0.9 -2.6 biopolymer transport protein ExbD compare
BWI76_RS13730 -0.9 -2.0 hypothetical protein compare
BWI76_RS04510 -0.9 -1.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS08405 -0.9 -1.5 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS12090 -0.9 -1.7 HNH endonuclease compare
BWI76_RS06800 -0.9 -1.2 DUF2496 domain-containing protein compare
BWI76_RS12870 -0.9 -2.0 putative phytanoyl-CoA dioxygenase compare
BWI76_RS15360 -0.9 -2.0 hypothetical protein compare
BWI76_RS02990 -0.9 -3.3 aspartate carbamoyltransferase regulatory subunit compare
BWI76_RS22450 -0.9 -1.6 selenoprotein W-related protein compare
BWI76_RS23485 -0.9 -4.5 hypothetical protein compare
BWI76_RS24635 -0.9 -2.3 autoinducer-2 (AI-2) modifying protein LsrG compare
BWI76_RS02995 -0.9 -3.9 aspartate carbamoyltransferase compare
BWI76_RS16470 -0.9 -1.4 transcriptional repressor NemR compare
BWI76_RS22645 -0.9 -3.1 RNA polymerase sigma factor RpoS compare
BWI76_RS01060 -0.9 -4.7 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase compare
BWI76_RS17990 -0.9 -3.8 paraquat-inducible membrane protein A compare
BWI76_RS26475 -0.9 -2.8 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS18190 -0.9 -2.9 carboxy-S-adenosyl-L-methionine synthase CmoA compare
BWI76_RS23530 -0.9 -1.8 MarR family transcriptional regulator compare
BWI76_RS11855 -0.9 -4.8 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS18710 -0.8 -6.2 GGDEF-domain containing protein compare
BWI76_RS05555 -0.8 -2.4 Crl family RNA polymerase assembly factor compare
BWI76_RS12790 -0.8 -1.2 lactate dehydrogenase compare
BWI76_RS24930 -0.8 -2.6 osmotically-inducible protein OsmY compare
BWI76_RS25285 -0.8 -0.9 HPr family phosphocarrier protein compare
BWI76_RS18715 -0.8 -3.3 hypothetical protein compare
BWI76_RS25060 -0.8 -1.8 lipoprotein NlpI compare
BWI76_RS08825 -0.8 -1.6 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS11130 -0.8 -2.8 PTS glucose transporter subunit IIBC compare
BWI76_RS22630 -0.8 -1.8 LysR family transcriptional regulator compare
BWI76_RS27915 -0.8 -1.4 YceK/YidQ family lipoprotein compare
BWI76_RS00720 -0.8 -1.0 DNA-binding response regulator compare
BWI76_RS27680 -0.8 -3.2 TetR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted across organisms