Experiment set12IT048 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Ginkgotoxin 5.5 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -5.1 -4.2 chromosomal replication initiator protein DnaA compare
BBR_RS14210 -4.9 -3.4 hypothetical protein compare
BBR_RS13035 -3.7 -2.5 ABC transporter permease compare
BBR_RS15520 -3.4 -4.1 shikimate 5-dehydrogenase compare
BBR_RS12545 -3.2 -4.9 DUF4012 domain-containing protein compare
BBR_RS16635 -3.2 -3.1 ABC transporter ATP-binding protein compare
BBR_RS19375 -3.1 -3.0 acyl-CoA carboxylase subunit beta compare
BBR_RS19070 -3.1 -2.1 50S ribosomal protein L33 compare
BBR_RS15455 -3.1 -3.0 orotate phosphoribosyltransferase compare
BBR_RS18565 -3.0 -2.2 CHAP domain-containing protein compare
BBR_RS15080 -2.9 -3.9 chorismate synthase compare
BBR_RS10625 -2.8 -2.8 FHA domain-containing protein compare
BBR_RS11315 -2.8 -14.4 MFS transporter compare
BBR_RS13030 -2.6 -4.3 cell division ATP-binding protein FtsE compare
BBR_RS21015 -2.6 -1.7 hypothetical protein compare
BBR_RS11470 -2.5 -2.4 6-phosphogluconolactonase compare
BBR_RS13635 -2.5 -7.8 carbamoyl-phosphate synthase large subunit compare
BBR_RS15440 -2.5 -4.4 orotidine-5'-phosphate decarboxylase compare
BBR_RS19540 -2.4 -3.7 homoserine dehydrogenase compare
BBR_RS16965 -2.4 -3.3 ATP-dependent DNA helicase compare
BBR_RS10620 -2.4 -5.1 phosphoprotein phosphatase compare
BBR_RS19190 -2.4 -8.4 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS19435 -2.4 -2.3 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS20430 -2.3 -4.2 hypothetical protein compare
BBR_RS14370 -2.2 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS19055 -2.2 -2.9 ferredoxin family protein compare
BBR_RS14330 -2.2 -2.1 glycogen debranching enzyme GlgX compare
BBR_RS13805 -2.2 -3.3 hypothetical protein compare
BBR_RS19120 -2.2 -8.6 helicase compare
BBR_RS16275 -2.1 -2.3 leucine--tRNA ligase compare
BBR_RS18725 -2.1 -3.7 ribonuclease HI compare
BBR_RS19450 -2.1 -2.0 GTPase ObgE compare
BBR_RS15435 -2.1 -3.9 dihydroorotase compare
BBR_RS19760 -2.0 -1.7 polysaccharide ABC transporter ATPase compare
BBR_RS10900 -2.0 -3.2 molecular chaperone DnaK compare
BBR_RS15425 -2.0 -2.7 aspartate carbamoyltransferase compare
BBR_RS16640 -1.9 -2.3 ABC transporter permease compare
BBR_RS13735 -1.9 -2.4 Lon protease compare
BBR_RS18690 -1.9 -7.6 diacylglycerol kinase compare
BBR_RS13820 -1.8 -2.0 ATP-binding protein compare
BBR_RS20460 -1.8 -4.6 chromosome partitioning protein ParB compare
BBR_RS15915 -1.8 -1.7 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS15055 -1.8 -2.9 hypothetical protein compare
BBR_RS13630 -1.7 -4.4 carbamoyl-phosphate synthase small subunit compare
BBR_RS15070 -1.7 -3.4 endolytic transglycosylase MltG compare
BBR_RS20465 -1.7 -6.7 chromosome partitioning protein compare
BBR_RS15090 -1.6 -1.1 type II 3-dehydroquinate dehydratase compare
BBR_RS18735 -1.6 -9.5 hypothetical protein compare
BBR_RS19465 -1.6 -3.0 ribonuclease E/G compare
BBR_RS17640 -1.5 -2.5 DNA-directed RNA polymerase subunit omega compare
BBR_RS14260 -1.5 -1.3 ABC transporter ATP-binding protein compare
BBR_RS14265 -1.5 -4.6 Solute-binding protein of ABC transporter system for metals compare
BBR_RS16430 -1.5 -2.8 nucleotide pyrophosphatase compare
BBR_RS19270 -1.4 -1.5 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS14190 -1.4 -5.9 transcriptional regulator compare
BBR_RS19160 -1.4 -1.6 phosphate ABC transporter permease subunit PstC compare
BBR_RS20455 -1.4 -6.1 thioredoxin-disulfide reductase compare
BBR_RS16750 -1.4 -2.9 ParA family protein compare
BBR_RS16675 -1.4 -3.2 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS11770 -1.4 -3.2 chorismate mutase compare
BBR_RS14240 -1.4 -5.0 1,4-alpha-glucan branching protein GlgB compare
BBR_RS12355 -1.3 -3.6 ribonuclease III compare
BBR_RS16400 -1.3 -2.5 hypothetical protein compare
BBR_RS15130 -1.3 -2.8 metal-sulfur cluster assembly factor compare
BBR_RS19800 -1.3 -11.5 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS14230 -1.3 -4.1 HAMP domain-containing histidine kinase compare
BBR_RS13125 -1.3 -1.9 ABC transporter permease compare
BBR_RS10755 -1.2 -4.1 adenylosuccinate synthase compare
BBR_RS13300 -1.2 -1.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS12590 -1.2 -3.0 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS19820 -1.2 -9.0 ATP-binding protein of ABC transporter system compare
BBR_RS18575 -1.2 -2.3 hypothetical protein compare
BBR_RS21170 -1.1 -6.1 membrane protein insertion efficiency factor YidD compare
BBR_RS13370 -1.1 -1.6 phosphoribosylamine--glycine ligase compare
BBR_RS16625 -1.1 -3.6 DUF3710 domain-containing protein compare
BBR_RS14080 -1.1 -1.9 hypothetical protein compare
BBR_RS12310 -1.1 -1.4 signal recognition particle protein compare
BBR_RS19815 -1.1 -8.5 ABC transporter permease compare
BBR_RS19535 -1.1 -8.1 homoserine kinase compare
BBR_RS14070 -1.1 -4.0 threonine synthase compare
BBR_RS10445 -1.0 -8.6 HlyC/CorC family transporter compare
BBR_RS13985 -1.0 -2.8 membrane protein compare
BBR_RS11510 -1.0 -1.0 signal recognition particle-docking protein FtsY compare
BBR_RS15230 -1.0 -3.1 elongation factor 4 compare
BBR_RS15350 -1.0 -1.2 plasmid pRiA4b ORF-3 family protein compare
BBR_RS12605 -0.9 -3.1 glycosyltransferase family 2 protein compare
BBR_RS16940 -0.9 -2.0 hypothetical protein compare
BBR_RS13455 -0.9 -2.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS13980 -0.9 -2.0 HD domain-containing protein compare
BBR_RS19125 -0.9 -3.5 hypothetical protein compare
BBR_RS15660 -0.9 -3.5 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS19645 -0.9 -4.3 RNA degradosome polyphosphate kinase compare
BBR_RS12905 -0.9 -2.2 galactose-1-phosphate uridylyltransferase compare
BBR_RS20920 -0.8 -2.5 hypothetical protein compare
BBR_RS13490 -0.8 -1.3 30S ribosomal protein S7 compare
BBR_RS14280 -0.8 -1.9 dephospho-CoA kinase compare
BBR_RS16670 -0.8 -2.6 hypothetical protein compare
BBR_RS14625 -0.8 -3.9 pyrroline-5-carboxylate reductase compare
BBR_RS12305 -0.8 -3.6 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS15785 -0.8 -1.4 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS17415 -0.8 -1.4 hypothetical protein compare
BBR_RS10990 -0.8 -4.0 recombination protein RecR compare
BBR_RS11175 -0.8 -5.7 penicillin-binding protein compare
BBR_RS19155 -0.8 -3.9 phosphate ABC transporter, permease protein PstA compare
BBR_RS18755 -0.8 -1.2 30S ribosome-binding factor RbfA compare
BBR_RS15730 -0.8 -1.9 hypothetical protein compare
BBR_RS15550 -0.8 -2.0 L-lactate dehydrogenase compare
BBR_RS16220 -0.8 -0.8 DNA cytosine methyltransferase compare
BBR_RS20910 -0.8 -0.9 DUF1829 domain-containing protein compare
BBR_RS20955 -0.7 -0.8 hypothetical protein compare
BBR_RS12235 -0.7 -1.2 hypothetical protein compare
BBR_RS16755 -0.7 -2.8 site-specific tyrosine recombinase XerD compare
BBR_RS12375 -0.7 -0.7 pantetheine-phosphate adenylyltransferase compare
BBR_RS20440 -0.7 -3.1 NUDIX hydrolase compare
BBR_RS19370 -0.7 -2.2 type I polyketide synthase compare
BBR_RS14540 -0.7 -1.5 Na+/H+ antiporter NhaA compare
BBR_RS18795 -0.7 -1.9 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS20775 -0.7 -1.2 DUF4230 domain-containing protein compare
BBR_RS18050 -0.7 -1.4 threonylcarbamoyl-AMP synthase compare
BBR_RS19755 -0.6 -4.7 glycosyl transferase compare
BBR_RS12980 -0.6 -4.7 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS21165 -0.6 -1.5 hypothetical protein compare
BBR_RS18215 -0.6 -3.3 AI-2E family transporter compare
BBR_RS19795 -0.6 -5.8 hypothetical protein compare
BBR_RS20480 -0.6 -0.8 membrane protein compare
BBR_RS16060 -0.6 -1.4 hypothetical protein compare
BBR_RS10580 -0.6 -1.0 septation inhibitor protein compare
BBR_RS17135 -0.6 -0.8 RluA family pseudouridine synthase compare
BBR_RS16255 -0.6 -1.3 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS15935 -0.6 -2.5 hypothetical protein compare
BBR_RS16820 -0.6 -1.8 RNA polymerase sigma factor RpoE compare
BBR_RS17290 -0.6 -3.1 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS12975 -0.6 -4.0 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS16610 -0.6 -2.2 hypothetical protein compare
BBR_RS16600 -0.6 -4.0 aconitate hydratase AcnA compare
BBR_RS10905 -0.6 -2.7 nucleotide exchange factor GrpE compare
BBR_RS18140 -0.6 -1.1 tRNA-Asp compare
BBR_RS10265 -0.5 -3.6 DNA replication and repair protein RecF compare
BBR_RS11595 -0.5 -1.7 50S ribosomal protein L9 compare
BBR_RS16655 -0.5 -2.6 tyrosine recombinase XerC compare
BBR_RS13640 -0.5 -2.6 orotidine-5'-phosphate decarboxylase compare
BBR_RS14075 -0.5 -2.9 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS16040 -0.5 -1.8 hypothetical protein compare
BBR_RS10570 -0.5 -2.1 hypothetical protein compare
BBR_RS14420 -0.5 -2.0 ribosome silencing factor compare
BBR_RS20770 -0.5 -1.3 30S ribosomal protein S14 compare
BBR_RS15445 -0.5 -1.8 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS20860 -0.5 -2.1 hypothetical protein compare
BBR_RS14495 -0.5 -1.4 trigger factor compare
BBR_RS15085 -0.5 -0.7 3-dehydroquinate synthase compare
BBR_RS16530 -0.5 -2.2 recombinase RecA compare
BBR_RS20885 -0.5 -0.5 hypothetical protein compare
BBR_RS11805 -0.5 -2.0 hypothetical protein compare
BBR_RS18180 -0.5 -3.2 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS15805 -0.5 -2.0 prolipoprotein diacylglyceryl transferase compare
BBR_RS14140 -0.5 -1.1 Ppx/GppA family phosphatase compare
BBR_RS15650 -0.5 -1.2 Holliday junction resolvase compare
BBR_RS11590 -0.5 -0.6 30S ribosomal protein S18 compare
BBR_RS21035 -0.5 -1.7 AMMECR1 domain-containing protein compare
BBR_RS15450 -0.5 -1.3 dihydroorotate dehydrogenase compare
BBR_RS20925 -0.5 -0.7 amino acid permease compare
BBR_RS20725 -0.5 -2.4 hypothetical protein compare
BBR_RS13945 -0.5 -0.8 Txe/YoeB family addiction module toxin compare
BBR_RS13740 -0.5 -1.8 DUF3052 domain-containing protein compare
BBR_RS16515 -0.5 -1.3 preprotein translocase subunit SecA compare
BBR_RS20435 -0.5 -0.6 CCA tRNA nucleotidyltransferase compare
BBR_RS14220 -0.5 -2.4 phosphomannomutase compare
BBR_RS19115 -0.5 -1.6 hypothetical protein compare
BBR_RS20830 -0.5 -0.5 hypothetical protein compare
BBR_RS14965 -0.4 -1.6 DUF2975 domain-containing protein compare
BBR_RS20720 -0.4 -1.4 DUF4422 domain-containing protein compare
BBR_RS11210 -0.4 -3.3 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS15155 -0.4 -1.4 histidine triad nucleotide-binding protein compare
BBR_RS17680 -0.4 -1.3 hypothetical protein compare
BBR_RS16620 -0.4 -1.3 DUF3159 domain-containing protein compare
BBR_RS18035 -0.4 -1.2 oligoribonuclease compare
BBR_RS15180 -0.4 -1.9 long-chain fatty acid--CoA ligase compare
BBR_RS12680 -0.4 -1.8 hypothetical protein compare
BBR_RS18700 -0.4 -2.4 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS19390 -0.4 -0.7 hypothetical protein compare
BBR_RS20630 -0.4 -2.1 transposase compare
BBR_RS13525 -0.4 -1.4 CrcB family protein compare
BBR_RS19445 -0.4 -3.5 glutamate 5-kinase compare
BBR_RS16520 -0.4 -2.6 ribosome-associated translation inhibitor RaiA compare
BBR_RS11970 -0.4 -1.0 Phage transcriptional regulator compare
BBR_RS17455 -0.4 -2.3 DNA-binding response regulator compare
BBR_RS11205 -0.4 -1.3 HPr family phosphocarrier protein compare
BBR_RS17500 -0.4 -2.3 hypothetical protein compare
BBR_RS14575 -0.4 -1.4 YraN family protein compare
BBR_RS20250 -0.4 -2.2 transcriptional regulator compare
BBR_RS15050 -0.4 -0.6 DUF948 domain-containing protein compare
BBR_RS15210 -0.4 -2.2 branched-chain amino acid aminotransferase compare
BBR_RS19905 -0.4 -0.5 methionine--tRNA ligase compare
BBR_RS19945 -0.4 -2.3 MarR family transcriptional regulator compare
BBR_RS14970 -0.4 -0.9 transcriptional regulator compare
BBR_RS21040 -0.4 -0.9 transcription factor WhiB compare
BBR_RS13850 -0.4 -1.8 ABC transporter permease compare
BBR_RS12580 -0.4 -1.6 transposase compare
BBR_RS11665 -0.4 -0.7 hypothetical protein compare
BBR_RS15320 -0.4 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Ginkgotoxin across organisms