Experiment set12IT047 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM

200 most important genes:

  gene name fitness t score description  
BWI76_RS26085 -5.4 -3.7 3-dehydroquinate synthase compare
BWI76_RS23920 -4.8 -7.5 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS21070 -4.4 -3.1 outer membrane protein assembly factor BamB compare
BWI76_RS04160 -4.3 -10.9 phosphoserine phosphatase compare
BWI76_RS17720 -4.3 -1.9 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS04470 -4.1 -12.0 carbamoyl phosphate synthase large subunit compare
BWI76_RS25220 -3.9 -5.5 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS09755 -3.9 -11.5 phosphoserine transaminase compare
BWI76_RS27430 -3.9 -2.3 (p)ppGpp synthetase compare
BWI76_RS25230 -3.7 -11.4 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS25215 -3.7 -6.0 phospholipid-binding protein MlaC compare
BWI76_RS00345 -3.7 -5.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS04465 -3.6 -5.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS23240 -3.5 -4.1 exonuclease V subunit gamma compare
BWI76_RS20895 -3.5 -4.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS23230 -3.4 -3.3 exodeoxyribonuclease V subunit beta compare
BWI76_RS00400 -3.4 -2.7 glutamine synthetase compare
BWI76_RS01210 -3.4 -2.3 tyrosine recombinase XerC compare
BWI76_RS18950 -3.4 -5.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS25225 -3.2 -11.2 ABC transporter permease compare
BWI76_RS26570 -3.2 -3.8 anion permease compare
BWI76_RS20475 -3.2 -5.3 phospholipid-binding lipoprotein MlaA compare
BWI76_RS08385 -3.2 -5.6 citrate (Si)-synthase compare
BWI76_RS07070 -3.0 -7.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS22755 -3.0 -6.0 phosphoadenosine phosphosulfate reductase compare
BWI76_RS27310 -3.0 -11.2 glycosyltransferase compare
BWI76_RS09660 -2.9 -1.9 DNA translocase FtsK compare
BWI76_RS01615 -2.9 -11.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS16990 -2.8 -6.7 ABC transporter ATP-binding protein compare
BWI76_RS02530 -2.8 -3.2 tRNA dimethylallyltransferase compare
BWI76_RS04530 -2.7 -2.6 peptidylprolyl isomerase SurA compare
BWI76_RS20435 -2.7 -2.3 chorismate synthase compare
BWI76_RS23480 -2.7 -11.0 EAL domain-containing protein compare
BWI76_RS18140 -2.5 -4.2 zinc ABC transporter permease compare
BWI76_RS20965 -2.5 -6.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS05260 -2.5 -3.0 chaperone compare
BWI76_RS04255 -2.5 -8.4 threonine synthase compare
BWI76_RS01610 -2.5 -7.8 phosphoribosylamine--glycine ligase compare
BWI76_RS21265 -2.4 -15.3 phosphoribosylformylglycinamidine synthase compare
BWI76_RS20350 -2.4 -5.7 amidophosphoribosyltransferase compare
BWI76_RS18135 -2.3 -5.9 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS23360 -2.3 -4.5 diaminopimelate decarboxylase compare
BWI76_RS18130 -2.3 -5.4 zinc ABC transporter substrate-binding protein compare
BWI76_RS00855 -2.2 -6.5 argininosuccinate lyase compare
BWI76_RS05835 -2.2 -3.7 gamma-glutamyl-phosphate reductase compare
BWI76_RS04645 -2.2 -7.9 3-dehydroquinase compare
BWI76_RS22765 -2.2 -8.2 sulfite reductase subunit alpha compare
BWI76_RS04250 -2.2 -5.0 homoserine kinase compare
BWI76_RS00975 -2.1 -9.8 dihydroxy-acid dehydratase compare
BWI76_RS03010 -2.1 -8.3 ornithine carbamoyltransferase compare
BWI76_RS18920 -2.1 -2.7 ATP phosphoribosyltransferase compare
BWI76_RS05015 -2.0 -3.9 transcriptional regulator compare
BWI76_RS20650 -2.0 -3.0 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS00805 -2.0 -5.6 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS18930 -2.0 -3.0 histidinol-phosphate transaminase compare
BWI76_RS20355 -2.0 -5.5 colicin V production protein compare
BWI76_RS05840 -2.0 -5.9 glutamate 5-kinase compare
BWI76_RS07065 -2.0 -8.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS01330 -1.9 -5.0 twin-arginine translocase subunit TatC compare
BWI76_RS09760 -1.9 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS18935 -1.9 -8.0 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS00850 -1.9 -9.2 acetylglutamate kinase compare
BWI76_RS02735 -1.9 -6.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS19845 -1.9 -4.4 phosphatase compare
BWI76_RS23220 -1.9 -7.5 amino-acid N-acetyltransferase compare
BWI76_RS22690 -1.9 -2.2 adenylyl-sulfate kinase compare
BWI76_RS21350 -1.8 -3.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS22760 -1.8 -6.4 sulfite reductase subunit beta compare
BWI76_RS18925 -1.8 -5.0 histidinol dehydrogenase compare
BWI76_RS08525 -1.8 -3.2 colicin transporter compare
BWI76_RS25115 -1.8 -6.8 argininosuccinate synthase compare
BWI76_RS24930 -1.7 -6.2 osmotically-inducible protein OsmY compare
BWI76_RS18770 -1.7 -1.8 DNA gyrase inhibitor compare
BWI76_RS17975 -1.7 -4.7 tail-specific protease compare
BWI76_RS04715 -1.7 -2.2 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS00845 -1.7 -8.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS09645 -1.7 -1.4 thioredoxin-disulfide reductase compare
BWI76_RS18940 -1.7 -2.5 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS00835 -1.7 -9.1 phosphoenolpyruvate carboxylase compare
BWI76_RS07475 -1.7 -1.4 DNA-binding transcriptional regulator RamA compare
BWI76_RS00965 -1.7 -1.6 acetolactate synthase 2 small subunit compare
BWI76_RS18605 -1.7 -1.9 oxidoreductase molybdopterin-binding protein compare
BWI76_RS04245 -1.6 -8.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS17000 -1.6 -3.5 Fe-S cluster assembly scaffold SufA compare
BWI76_RS06775 -1.6 -9.0 multidrug efflux RND transporter permease subunit compare
BWI76_RS16975 -1.6 -5.4 cysteine desufuration protein SufE compare
BWI76_RS23365 -1.6 -6.7 LysR family transcriptional regulator compare
BWI76_RS06765 -1.6 -2.5 transcriptional regulator compare
BWI76_RS11845 -1.6 -3.0 tryptophan synthase subunit beta compare
BWI76_RS18955 -1.6 -3.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04685 -1.6 -7.3 putative leucine operon leader peptide compare
BWI76_RS01585 -1.5 -3.9 transcriptional regulator compare
BWI76_RS17980 -1.5 -3.5 RNA chaperone ProQ compare
BWI76_RS04675 -1.5 -5.2 3-isopropylmalate dehydrogenase compare
BWI76_RS16995 -1.5 -6.1 Fe-S cluster assembly protein SufB compare
BWI76_RS26200 -1.5 -4.0 starch synthase compare
BWI76_RS00940 -1.5 -7.8 transcriptional regulator HdfR compare
BWI76_RS05200 -1.5 -2.5 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS08380 -1.5 -2.2 endonuclease VIII compare
BWI76_RS06770 -1.5 -8.5 Hha toxicity attenuator compare
BWI76_RS26620 -1.5 -1.6 Fe-S biogenesis protein NfuA compare
BWI76_RS04680 -1.5 -8.5 2-isopropylmalate synthase compare
BWI76_RS04665 -1.5 -11.7 3-isopropylmalate dehydratase small subunit compare
BWI76_RS02995 -1.5 -6.9 aspartate carbamoyltransferase compare
BWI76_RS17190 -1.5 -2.1 TonB system transport protein TonB compare
BWI76_RS21475 -1.5 -5.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS26460 -1.4 -2.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26485 -1.4 -7.7 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
BWI76_RS16980 -1.4 -1.9 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS23265 -1.4 -3.4 hypothetical protein compare
BWI76_RS07705 -1.4 -3.4 enterochelin esterase compare
BWI76_RS26475 -1.4 -6.7 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS10835 -1.4 -1.7 hypothetical protein compare
BWI76_RS01085 -1.4 -6.1 polysaccharide chain length modulation protein compare
BWI76_RS00990 -1.4 -7.3 ketol-acid reductoisomerase compare
BWI76_RS26395 -1.3 -3.4 cell division protein FtsE compare
BWI76_RS26390 -1.3 -4.2 cell division protein FtsX compare
BWI76_RS11840 -1.3 -2.0 tryptophan synthase subunit alpha compare
BWI76_RS19010 -1.3 -2.9 polysaccharide pyruvyl transferase yvff compare
BWI76_RS11965 -1.3 -4.5 orotidine-5'-phosphate decarboxylase compare
BWI76_RS06780 -1.3 -5.5 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS00760 -1.3 -3.4 cell division protein FtsN compare
BWI76_RS25335 -1.3 -2.4 stringent starvation protein A compare
BWI76_RS20380 -1.2 -1.5 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS21450 -1.2 -2.0 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS21000 -1.2 -4.1 exopolyphosphatase compare
BWI76_RS21310 -1.2 -1.1 DNA repair protein RecO compare
BWI76_RS26480 -1.2 -4.0 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS27305 -1.2 -4.1 glycosyl transferase compare
BWI76_RS02410 -1.2 -1.3 EF-P beta-lysylation protein EpmB compare
BWI76_RS19805 -1.2 -3.4 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS16035 -1.2 -2.5 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS00970 -1.2 -4.2 branched chain amino acid aminotransferase compare
BWI76_RS21345 -1.2 -1.6 sigma-E factor regulatory protein RseB compare
BWI76_RS25920 -1.2 -2.3 peptidylprolyl isomerase compare
BWI76_RS26075 -1.2 -2.5 DNA adenine methylase compare
BWI76_RS06735 -1.2 -2.1 50S ribosomal protein L31 compare
BWI76_RS24400 -1.2 -5.6 outer membrane channel protein TolC compare
BWI76_RS14770 -1.1 -1.6 PTS IIA 2 domain protein compare
BWI76_RS25600 -1.1 -1.3 tRNA-Thr compare
BWI76_RS21465 -1.1 -3.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS09635 -1.1 -1.7 amino acid ABC transporter ATP-binding protein compare
BWI76_RS04670 -1.1 -6.2 3-isopropylmalate dehydratase large subunit compare
BWI76_RS00980 -1.1 -6.7 PLP-dependent threonine dehydratase compare
BWI76_RS20640 -1.1 -4.1 cysteine synthase A compare
BWI76_RS19685 -1.1 -5.0 lysine transporter compare
BWI76_RS26465 -1.1 -7.7 4-amino-4-deoxy-L-arabinose lipid A transferase compare
BWI76_RS07725 -1.1 -1.4 iron-enterobactin transporter permease compare
BWI76_RS26455 -1.1 -3.6 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS23930 -1.1 -4.2 transcriptional regulator ArgP compare
BWI76_RS01090 -1.1 -5.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS01080 -1.1 -6.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS24280 -1.1 -2.8 biopolymer transporter ExbB compare
BWI76_RS01630 -1.1 -1.2 16S ribosomal RNA compare
BWI76_RS04240 -1.1 -1.8 thr operon leader peptide compare
BWI76_RS22805 -1.1 -6.7 GTP diphosphokinase compare
BWI76_RS23970 -1.1 -2.2 mechanosensitive ion channel protein MscS compare
BWI76_RS27440 -1.1 -1.9 DNA helicase RecG compare
BWI76_RS19765 -1.0 -6.2 membrane protein compare
BWI76_RS01135 -1.0 -3.8 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS04515 -1.0 -1.6 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS23885 -1.0 -1.3 2-octaprenylphenol hydroxylase compare
BWI76_RS17990 -1.0 -4.0 paraquat-inducible membrane protein A compare
BWI76_RS00720 -1.0 -1.7 DNA-binding response regulator compare
BWI76_RS05135 -1.0 -3.2 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS24900 -1.0 -2.0 DeoR family transcriptional regulator compare
BWI76_RS21460 -1.0 -1.6 translation inhibitor protein RaiA compare
BWI76_RS26670 -1.0 -5.7 two-component sensor histidine kinase compare
BWI76_RS21685 -1.0 -1.4 hypothetical protein compare
BWI76_RS06740 -0.9 -3.5 50S ribosomal protein L36 compare
BWI76_RS02725 -0.9 -1.1 HxlR family transcriptional regulator compare
BWI76_RS01060 -0.9 -3.4 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase compare
BWI76_RS00840 -0.9 -4.6 acetylornithine deacetylase compare
BWI76_RS00960 -0.9 -4.5 acetolactate synthase 2 catalytic subunit compare
BWI76_RS14415 -0.9 -1.9 transcriptional regulator, TetR family protein compare
BWI76_RS01065 -0.9 -3.2 ATP-dependent RNA helicase RhlB compare
BWI76_RS01350 -0.9 -0.9 NAD(P)H-flavin reductase compare
BWI76_RS11860 -0.9 -5.4 anthranilate synthase component I compare
BWI76_RS01655 -0.9 -3.2 homoserine O-succinyltransferase compare
BWI76_RS12090 -0.9 -1.4 HNH endonuclease compare
BWI76_RS13955 -0.8 -2.2 hypothetical protein compare
BWI76_RS05140 -0.8 -3.3 Fe3+-hydroxamate ABC transporter permease FhuB conserved
BWI76_RS17180 -0.8 -1.7 hypothetical protein compare
BWI76_RS20925 -0.8 -4.4 peptidase M48 compare
BWI76_RS17200 -0.8 -1.4 hypothetical protein compare
BWI76_RS15435 -0.8 -1.2 hypothetical protein compare
BWI76_RS11520 -0.8 -1.0 hypothetical protein compare
BWI76_RS23485 -0.8 -3.8 hypothetical protein compare
BWI76_RS02855 -0.8 -1.3 cytochrome B562 compare
BWI76_RS18065 -0.8 -1.6 DNA polymerase III subunit theta compare
BWI76_RS19840 -0.8 -1.1 hypothetical protein compare
BWI76_RS15920 -0.8 -1.3 hypothetical protein compare
BWI76_RS11275 -0.8 -3.2 sensor protein PhoQ compare
BWI76_RS15835 -0.8 -0.8 hypothetical protein compare
BWI76_RS22975 -0.8 -1.8 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
BWI76_RS20740 -0.8 -2.7 coproporphyrinogen III oxidase compare
BWI76_RS11850 -0.8 -4.9 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS16485 -0.8 -1.4 ribonuclease T compare
BWI76_RS26000 -0.8 -2.9 aspartate aminotransferase family protein compare
BWI76_RS11855 -0.8 -3.7 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare


Specific Phenotypes

For 9 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms