Experiment set12IT046 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and Iron (II) sulfate heptahydrate 0.209 mg/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS20895 -5.8 -7.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS26460 -5.5 -6.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26085 -5.4 -3.7 3-dehydroquinate synthase compare
BWI76_RS20355 -5.0 -5.1 colicin V production protein compare
BWI76_RS23360 -4.9 -5.8 diaminopimelate decarboxylase compare
BWI76_RS25215 -4.7 -8.9 phospholipid-binding protein MlaC compare
BWI76_RS20475 -4.6 -5.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS25220 -4.6 -6.2 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS24400 -4.6 -7.6 outer membrane channel protein TolC compare
BWI76_RS23920 -4.4 -7.3 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS25225 -4.4 -10.9 ABC transporter permease compare
BWI76_RS17720 -4.3 -1.9 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS20965 -4.3 -7.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS23240 -4.3 -2.9 exonuclease V subunit gamma compare
BWI76_RS25230 -4.2 -6.8 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS26455 -4.2 -5.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS04470 -4.1 -12.3 carbamoyl phosphate synthase large subunit compare
BWI76_RS18140 -3.9 -5.1 zinc ABC transporter permease compare
BWI76_RS05835 -3.9 -5.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS20650 -3.9 -2.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS09755 -3.8 -11.0 phosphoserine transaminase compare
BWI76_RS26570 -3.7 -5.8 anion permease compare
BWI76_RS04465 -3.7 -7.5 carbamoyl-phosphate synthase small subunit compare
BWI76_RS18135 -3.7 -5.4 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS01615 -3.7 -13.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS20435 -3.6 -2.2 chorismate synthase compare
BWI76_RS05015 -3.6 -4.8 transcriptional regulator compare
BWI76_RS00805 -3.6 -6.1 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS04160 -3.5 -6.1 phosphoserine phosphatase compare
BWI76_RS21265 -3.4 -14.3 phosphoribosylformylglycinamidine synthase compare
BWI76_RS00965 -3.3 -2.0 acetolactate synthase 2 small subunit compare
BWI76_RS25115 -3.3 -6.3 argininosuccinate synthase compare
BWI76_RS09760 -3.3 -7.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS18950 -3.2 -6.6 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS23220 -3.2 -9.4 amino-acid N-acetyltransferase compare
BWI76_RS00845 -3.2 -12.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS08500 -3.1 -4.7 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS05840 -3.1 -5.4 glutamate 5-kinase compare
BWI76_RS00855 -3.1 -11.0 argininosuccinate lyase compare
BWI76_RS22805 -3.1 -13.3 GTP diphosphokinase compare
BWI76_RS23230 -3.1 -4.2 exodeoxyribonuclease V subunit beta compare
BWI76_RS07070 -3.0 -5.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04255 -3.0 -9.9 threonine synthase compare
BWI76_RS09635 -3.0 -4.5 amino acid ABC transporter ATP-binding protein compare
BWI76_RS00850 -3.0 -9.9 acetylglutamate kinase compare
BWI76_RS04305 -2.9 -1.8 molecular chaperone DnaJ compare
BWI76_RS08385 -2.9 -4.7 citrate (Si)-synthase compare
BWI76_RS09660 -2.9 -2.0 DNA translocase FtsK compare
BWI76_RS00400 -2.9 -1.9 glutamine synthetase compare
BWI76_RS23365 -2.9 -6.1 LysR family transcriptional regulator compare
BWI76_RS03010 -2.9 -11.1 ornithine carbamoyltransferase compare
BWI76_RS26000 -2.9 -9.5 aspartate aminotransferase family protein compare
BWI76_RS18920 -2.8 -4.8 ATP phosphoribosyltransferase compare
BWI76_RS18930 -2.8 -4.6 histidinol-phosphate transaminase compare
BWI76_RS01210 -2.8 -2.7 tyrosine recombinase XerC compare
BWI76_RS18935 -2.8 -8.8 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04250 -2.8 -9.3 homoserine kinase compare
BWI76_RS00345 -2.7 -4.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS18940 -2.7 -7.5 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS00990 -2.7 -11.1 ketol-acid reductoisomerase compare
BWI76_RS04645 -2.6 -7.2 3-dehydroquinase compare
BWI76_RS01610 -2.6 -9.5 phosphoribosylamine--glycine ligase compare
BWI76_RS07065 -2.6 -8.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS21070 -2.6 -3.5 outer membrane protein assembly factor BamB compare
BWI76_RS20350 -2.6 -7.3 amidophosphoribosyltransferase compare
BWI76_RS04675 -2.6 -7.4 3-isopropylmalate dehydrogenase compare
BWI76_RS18130 -2.6 -5.1 zinc ABC transporter substrate-binding protein compare
BWI76_RS00975 -2.6 -8.8 dihydroxy-acid dehydratase compare
BWI76_RS08495 -2.5 -6.9 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS04245 -2.5 -13.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS17975 -2.4 -5.1 tail-specific protease compare
BWI76_RS20380 -2.4 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS19845 -2.4 -6.5 phosphatase compare
BWI76_RS21475 -2.4 -6.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS26200 -2.3 -6.0 starch synthase compare
BWI76_RS04530 -2.3 -2.7 peptidylprolyl isomerase SurA compare
BWI76_RS00835 -2.3 -12.9 phosphoenolpyruvate carboxylase compare
BWI76_RS01325 -2.3 -3.1 twin-arginine translocase subunit TatB compare
BWI76_RS18925 -2.2 -6.9 histidinol dehydrogenase compare
BWI76_RS11850 -2.2 -7.2 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS21310 -2.1 -1.6 DNA repair protein RecO compare
BWI76_RS06780 -2.1 -9.2 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS17980 -2.1 -5.3 RNA chaperone ProQ compare
BWI76_RS04665 -2.1 -14.8 3-isopropylmalate dehydratase small subunit compare
BWI76_RS11965 -2.1 -4.5 orotidine-5'-phosphate decarboxylase compare
BWI76_RS26620 -2.1 -2.0 Fe-S biogenesis protein NfuA compare
BWI76_RS27310 -2.0 -10.1 glycosyltransferase compare
BWI76_RS01800 -2.0 -6.0 glucose-6-phosphate isomerase compare
BWI76_RS21350 -1.9 -2.7 anti-RNA polymerase sigma factor SigE compare
BWI76_RS11840 -1.9 -6.0 tryptophan synthase subunit alpha compare
BWI76_RS24285 -1.9 -9.4 cystathionine beta-lyase compare
BWI76_RS04685 -1.9 -12.0 putative leucine operon leader peptide compare
BWI76_RS00980 -1.9 -10.8 PLP-dependent threonine dehydratase compare
BWI76_RS09640 -1.9 -3.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS05260 -1.8 -2.8 chaperone compare
BWI76_RS11860 -1.8 -8.6 anthranilate synthase component I compare
BWI76_RS04240 -1.8 -3.4 thr operon leader peptide compare
BWI76_RS25425 -1.8 -2.4 arginine repressor compare
BWI76_RS24275 -1.8 -3.5 biopolymer transport protein ExbD compare
BWI76_RS17195 -1.8 -3.4 hypothetical protein compare
BWI76_RS04670 -1.7 -10.1 3-isopropylmalate dehydratase large subunit compare
BWI76_RS06775 -1.7 -11.6 multidrug efflux RND transporter permease subunit compare
BWI76_RS21465 -1.7 -4.0 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS10990 -1.7 -3.2 dihydroorotase compare
BWI76_RS04680 -1.7 -9.6 2-isopropylmalate synthase compare
BWI76_RS08520 -1.6 -2.1 colicin transporter TolQ compare
BWI76_RS15290 -1.6 -1.9 transcriptional regulator compare
BWI76_RS11855 -1.6 -8.2 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS23885 -1.6 -2.3 2-octaprenylphenol hydroxylase compare
BWI76_RS00785 -1.5 -5.1 cystathionine gamma-synthase compare
BWI76_RS18955 -1.5 -2.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS19850 -1.5 -2.1 tRNA-Pro compare
BWI76_RS25065 -1.5 -3.8 polyribonucleotide nucleotidyltransferase compare
BWI76_RS09970 -1.5 -1.9 porin OmpA compare
BWI76_RS25645 -1.5 -6.3 shikimate dehydrogenase compare
BWI76_RS01330 -1.5 -3.7 twin-arginine translocase subunit TatC compare
BWI76_RS00960 -1.5 -6.8 acetolactate synthase 2 catalytic subunit compare
BWI76_RS08525 -1.4 -2.6 colicin transporter compare
BWI76_RS11130 -1.4 -6.7 PTS glucose transporter subunit IIBC compare
BWI76_RS24900 -1.4 -2.6 DeoR family transcriptional regulator compare
BWI76_RS09910 -1.4 -11.2 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS02995 -1.4 -7.2 aspartate carbamoyltransferase compare
BWI76_RS22690 -1.4 -3.2 adenylyl-sulfate kinase compare
BWI76_RS27385 -1.4 -5.9 orotate phosphoribosyltransferase compare
BWI76_RS27390 -1.4 -5.1 ribonuclease PH compare
BWI76_RS09655 -1.4 -4.6 leucine-responsive regulatory protein compare
BWI76_RS01110 -1.3 -4.3 TDP-fucosamine acetyltransferase compare
BWI76_RS27875 -1.3 -1.8 membrane protein compare
BWI76_RS01655 -1.3 -6.0 homoserine O-succinyltransferase compare
BWI76_RS20440 -1.3 -1.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS19840 -1.3 -1.7 hypothetical protein compare
BWI76_RS11515 -1.3 -2.1 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS11845 -1.3 -1.9 tryptophan synthase subunit beta compare
BWI76_RS11675 -1.3 -3.0 arginine N-succinyltransferase compare
BWI76_RS21165 -1.2 -2.2 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS25600 -1.2 -1.4 tRNA-Thr compare
BWI76_RS25335 -1.2 -2.4 stringent starvation protein A compare
BWI76_RS01350 -1.2 -1.2 NAD(P)H-flavin reductase compare
BWI76_RS19685 -1.2 -4.9 lysine transporter compare
BWI76_RS15835 -1.1 -1.2 hypothetical protein compare
BWI76_RS01630 -1.1 -1.3 16S ribosomal RNA compare
BWI76_RS16215 -1.1 -5.4 hypothetical protein compare
BWI76_RS00355 -1.1 -2.9 DNA polymerase I compare
BWI76_RS01135 -1.1 -4.5 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS01185 -1.1 -2.2 adenylate cyclase compare
BWI76_RS26075 -1.1 -3.9 DNA adenine methylase compare
BWI76_RS05200 -1.1 -1.4 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS00240 -1.1 -3.1 FMN-binding protein MioC compare
BWI76_RS17000 -1.1 -4.7 Fe-S cluster assembly scaffold SufA compare
BWI76_RS23930 -1.1 -5.2 transcriptional regulator ArgP compare
BWI76_RS15825 -1.1 -1.2 hypothetical protein compare
BWI76_RS16490 -1.0 -2.2 glutaredoxin compare
BWI76_RS18065 -1.0 -2.0 DNA polymerase III subunit theta compare
BWI76_RS01200 -1.0 -1.6 diaminopimelate epimerase compare
BWI76_RS18190 -1.0 -1.6 carboxy-S-adenosyl-L-methionine synthase CmoA compare
BWI76_RS25320 -1.0 -4.5 glutamate synthase compare
BWI76_RS17770 -1.0 -1.7 isomerase/hydrolase compare
BWI76_RS25315 -1.0 -6.4 glutamate synthase large subunit compare
BWI76_RS17400 -1.0 -1.2 transporter compare
BWI76_RS21810 -1.0 -1.9 universal stress protein compare
BWI76_RS27290 -1.0 -5.6 hypothetical protein compare
BWI76_RS25960 -1.0 -2.4 NUDIX hydrolase compare
BWI76_RS16980 -1.0 -3.6 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS01085 -0.9 -4.7 polysaccharide chain length modulation protein compare
BWI76_RS13595 -0.9 -4.2 transcriptional regulator compare
BWI76_RS13545 -0.9 -1.3 N-acetyltransferase compare
BWI76_RS19760 -0.9 -2.7 GTP-binding protein compare
BWI76_RS22765 -0.9 -5.2 sulfite reductase subunit alpha compare
BWI76_RS01090 -0.9 -4.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS00970 -0.9 -3.0 branched chain amino acid aminotransferase compare
BWI76_RS21250 -0.9 -4.1 two-component system response regulator GlrR compare
BWI76_RS27680 -0.9 -3.4 TetR family transcriptional regulator compare
BWI76_RS00720 -0.9 -1.3 DNA-binding response regulator compare
BWI76_RS06475 -0.9 -1.2 protoheme IX farnesyltransferase compare
BWI76_RS24580 -0.9 -4.6 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS11275 -0.9 -3.5 sensor protein PhoQ compare
BWI76_RS11900 -0.9 -1.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS16995 -0.9 -3.9 Fe-S cluster assembly protein SufB compare
BWI76_RS20925 -0.9 -4.2 peptidase M48 compare
BWI76_RS26475 -0.9 -4.8 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS10530 -0.9 -2.0 GntR family transcriptional regulator with compare
BWI76_RS09650 -0.8 -3.9 hypothetical protein compare
BWI76_RS25060 -0.8 -1.7 lipoprotein NlpI compare
BWI76_RS17155 -0.8 -1.4 hypothetical protein compare
BWI76_RS19805 -0.8 -2.2 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS22625 -0.8 -1.9 transcriptional regulator compare
BWI76_RS17565 -0.8 -1.7 hypothetical protein compare
BWI76_RS19935 -0.8 -1.4 hypothetical protein compare
BWI76_RS10815 -0.8 -3.1 iron permease compare
BWI76_RS01795 -0.8 -3.6 hypothetical protein compare
BWI76_RS23265 -0.8 -2.7 hypothetical protein compare
BWI76_RS02880 -0.8 -1.6 membrane protein compare
BWI76_RS06770 -0.8 -5.1 Hha toxicity attenuator compare
BWI76_RS14805 -0.8 -2.6 hypothetical protein compare
BWI76_RS17190 -0.8 -0.9 TonB system transport protein TonB compare
BWI76_RS12860 -0.8 -2.0 hypothetical protein compare
BWI76_RS17290 -0.8 -3.3 formyltetrahydrofolate deformylase compare
BWI76_RS23515 -0.8 -2.3 antibiotic biosynthesis monooxygenase compare
BWI76_RS06830 -0.8 -2.1 recombination protein RecR compare
BWI76_RS14770 -0.8 -1.2 PTS IIA 2 domain protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted across organisms