Experiment set12IT045 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) sulfate heptahydrate 0.209 mg/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS01210 -5.6 -3.8 tyrosine recombinase XerC compare
BWI76_RS26455 -5.3 -4.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS20895 -5.2 -7.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00400 -5.0 -3.4 glutamine synthetase compare
BWI76_RS25230 -4.4 -12.0 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS09755 -4.3 -10.1 phosphoserine transaminase compare
BWI76_RS25225 -4.3 -7.6 ABC transporter permease compare
BWI76_RS17720 -4.3 -2.0 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS07070 -4.1 -8.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS26460 -4.1 -7.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS00345 -4.0 -5.5 protein disulfide oxidoreductase DsbA compare
BWI76_RS24400 -4.0 -8.1 outer membrane channel protein TolC compare
BWI76_RS04470 -4.0 -12.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS01615 -3.9 -11.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS09635 -3.9 -4.6 amino acid ABC transporter ATP-binding protein compare
BWI76_RS08385 -3.8 -5.1 citrate (Si)-synthase compare
BWI76_RS26085 -3.8 -3.7 3-dehydroquinate synthase compare
BWI76_RS20965 -3.8 -6.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS20475 -3.7 -7.5 phospholipid-binding lipoprotein MlaA compare
BWI76_RS04160 -3.7 -10.6 phosphoserine phosphatase compare
BWI76_RS04645 -3.7 -8.8 3-dehydroquinase compare
BWI76_RS21265 -3.6 -12.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS20435 -3.5 -2.2 chorismate synthase compare
BWI76_RS25215 -3.5 -10.6 phospholipid-binding protein MlaC compare
BWI76_RS04465 -3.5 -6.2 carbamoyl-phosphate synthase small subunit compare
BWI76_RS20350 -3.5 -6.9 amidophosphoribosyltransferase compare
BWI76_RS18950 -3.4 -3.9 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS00855 -3.4 -10.6 argininosuccinate lyase compare
BWI76_RS23920 -3.4 -6.3 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS18940 -3.4 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS10990 -3.3 -5.2 dihydroorotase compare
BWI76_RS00965 -3.3 -2.1 acetolactate synthase 2 small subunit compare
BWI76_RS23240 -3.3 -4.4 exonuclease V subunit gamma compare
BWI76_RS01610 -3.1 -9.3 phosphoribosylamine--glycine ligase compare
BWI76_RS23360 -3.1 -3.0 diaminopimelate decarboxylase compare
BWI76_RS25220 -3.1 -4.6 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS04255 -3.1 -12.3 threonine synthase compare
BWI76_RS18930 -3.1 -4.0 histidinol-phosphate transaminase compare
BWI76_RS00805 -3.0 -3.6 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS07065 -3.0 -7.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20355 -3.0 -6.5 colicin V production protein compare
BWI76_RS23220 -2.9 -9.4 amino-acid N-acetyltransferase compare
BWI76_RS00845 -2.8 -8.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00850 -2.8 -12.8 acetylglutamate kinase compare
BWI76_RS26570 -2.8 -4.8 anion permease compare
BWI76_RS21070 -2.8 -2.3 outer membrane protein assembly factor BamB compare
BWI76_RS09760 -2.8 -8.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS03010 -2.8 -9.4 ornithine carbamoyltransferase compare
BWI76_RS11965 -2.7 -6.1 orotidine-5'-phosphate decarboxylase compare
BWI76_RS00990 -2.7 -7.4 ketol-acid reductoisomerase compare
BWI76_RS23230 -2.7 -4.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS18935 -2.6 -11.0 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04250 -2.6 -5.6 homoserine kinase compare
BWI76_RS22805 -2.5 -9.4 GTP diphosphokinase compare
BWI76_RS21475 -2.4 -7.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS27430 -2.4 -2.4 (p)ppGpp synthetase compare
BWI76_RS25115 -2.4 -7.4 argininosuccinate synthase compare
BWI76_RS04245 -2.4 -12.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS20650 -2.4 -3.5 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS23365 -2.4 -3.2 LysR family transcriptional regulator compare
BWI76_RS05840 -2.4 -7.1 glutamate 5-kinase compare
BWI76_RS18135 -2.4 -5.8 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS00835 -2.3 -10.3 phosphoenolpyruvate carboxylase compare
BWI76_RS19845 -2.3 -4.7 phosphatase compare
BWI76_RS00975 -2.3 -11.2 dihydroxy-acid dehydratase compare
BWI76_RS18925 -2.2 -3.6 histidinol dehydrogenase compare
BWI76_RS00980 -2.2 -13.0 PLP-dependent threonine dehydratase compare
BWI76_RS04530 -2.2 -2.6 peptidylprolyl isomerase SurA compare
BWI76_RS26200 -2.2 -5.4 starch synthase compare
BWI76_RS26000 -2.1 -9.5 aspartate aminotransferase family protein compare
BWI76_RS18130 -2.1 -5.7 zinc ABC transporter substrate-binding protein compare
BWI76_RS18140 -2.1 -5.9 zinc ABC transporter permease compare
BWI76_RS24285 -2.1 -6.9 cystathionine beta-lyase compare
BWI76_RS02995 -2.0 -9.3 aspartate carbamoyltransferase compare
BWI76_RS05835 -1.9 -2.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS02410 -1.9 -1.8 EF-P beta-lysylation protein EpmB compare
BWI76_RS22690 -1.9 -3.4 adenylyl-sulfate kinase compare
BWI76_RS09640 -1.9 -2.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS22760 -1.9 -6.0 sulfite reductase subunit beta compare
BWI76_RS04685 -1.9 -9.6 putative leucine operon leader peptide compare
BWI76_RS25645 -1.9 -7.3 shikimate dehydrogenase compare
BWI76_RS11840 -1.9 -2.8 tryptophan synthase subunit alpha compare
BWI76_RS22755 -1.9 -5.9 phosphoadenosine phosphosulfate reductase compare
BWI76_RS05015 -1.9 -2.8 transcriptional regulator compare
BWI76_RS04665 -1.9 -13.3 3-isopropylmalate dehydratase small subunit compare
BWI76_RS04510 -1.9 -2.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS01200 -1.9 -1.8 diaminopimelate epimerase compare
BWI76_RS11845 -1.8 -5.4 tryptophan synthase subunit beta compare
BWI76_RS25335 -1.8 -2.2 stringent starvation protein A compare
BWI76_RS04240 -1.7 -3.3 thr operon leader peptide compare
BWI76_RS27310 -1.7 -7.3 glycosyltransferase compare
BWI76_RS08495 -1.7 -6.8 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS01655 -1.7 -7.8 homoserine O-succinyltransferase compare
BWI76_RS22765 -1.7 -7.4 sulfite reductase subunit alpha compare
BWI76_RS04670 -1.6 -6.3 3-isopropylmalate dehydratase large subunit compare
BWI76_RS09910 -1.6 -11.2 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS09655 -1.6 -3.4 leucine-responsive regulatory protein compare
BWI76_RS18920 -1.6 -2.8 ATP phosphoribosyltransferase compare
BWI76_RS09660 -1.6 -1.5 DNA translocase FtsK compare
BWI76_RS08535 -1.6 -2.2 translocation protein TolB compare
BWI76_RS08500 -1.6 -4.6 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS04675 -1.5 -3.8 3-isopropylmalate dehydrogenase compare
BWI76_RS04680 -1.5 -8.9 2-isopropylmalate synthase compare
BWI76_RS21675 -1.5 -1.5 hypothetical protein compare
BWI76_RS27385 -1.5 -7.4 orotate phosphoribosyltransferase compare
BWI76_RS00785 -1.5 -4.4 cystathionine gamma-synthase compare
BWI76_RS18955 -1.4 -3.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS00720 -1.4 -3.2 DNA-binding response regulator compare
BWI76_RS15060 -1.4 -3.6 MarR family transcriptional regulator compare
BWI76_RS20380 -1.4 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS01325 -1.4 -1.3 twin-arginine translocase subunit TatB compare
BWI76_RS00240 -1.4 -2.7 FMN-binding protein MioC compare
BWI76_RS17195 -1.4 -3.0 hypothetical protein compare
BWI76_RS25600 -1.4 -1.5 tRNA-Thr compare
BWI76_RS18065 -1.4 -2.4 DNA polymerase III subunit theta compare
BWI76_RS11855 -1.3 -7.2 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS01800 -1.3 -2.8 glucose-6-phosphate isomerase compare
BWI76_RS23915 -1.3 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS21465 -1.3 -5.2 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS02735 -1.3 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS23930 -1.3 -3.5 transcriptional regulator ArgP compare
BWI76_RS17975 -1.3 -2.8 tail-specific protease compare
BWI76_RS25315 -1.2 -8.0 glutamate synthase large subunit compare
BWI76_RS11860 -1.2 -3.9 anthranilate synthase component I compare
BWI76_RS05260 -1.2 -2.3 chaperone compare
BWI76_RS19685 -1.2 -5.0 lysine transporter compare
BWI76_RS17980 -1.2 -3.7 RNA chaperone ProQ compare
BWI76_RS00960 -1.2 -4.6 acetolactate synthase 2 catalytic subunit compare
BWI76_RS02725 -1.2 -1.4 HxlR family transcriptional regulator compare
BWI76_RS09970 -1.1 -1.7 porin OmpA compare
BWI76_RS11850 -1.1 -4.5 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS25320 -1.1 -4.2 glutamate synthase compare
BWI76_RS11440 -1.1 -1.4 hypothetical protein compare
BWI76_RS15835 -1.1 -1.7 hypothetical protein compare
BWI76_RS18385 -1.1 -1.5 hypothetical protein compare
BWI76_RS27390 -1.1 -2.7 ribonuclease PH compare
BWI76_RS16895 -1.1 -2.1 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS17155 -1.1 -1.9 hypothetical protein compare
BWI76_RS12870 -1.1 -2.6 putative phytanoyl-CoA dioxygenase compare
BWI76_RS09650 -1.0 -4.7 hypothetical protein compare
BWI76_RS19850 -1.0 -2.7 tRNA-Pro compare
BWI76_RS19805 -1.0 -3.8 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS08525 -1.0 -1.7 colicin transporter compare
BWI76_RS23895 -1.0 -1.8 Xaa-Pro aminopeptidase compare
BWI76_RS19240 -1.0 -1.6 ABC transporter substrate-binding protein compare
BWI76_RS21350 -1.0 -2.2 anti-RNA polymerase sigma factor SigE compare
BWI76_RS05200 -1.0 -2.2 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS05570 -0.9 -1.2 hypothetical protein compare
BWI76_RS20900 -0.9 -1.2 outer membrane protein assembly factor BamC compare
BWI76_RS01330 -0.9 -2.2 twin-arginine translocase subunit TatC compare
BWI76_RS25060 -0.9 -2.6 lipoprotein NlpI compare
BWI76_RS00390 -0.9 -3.2 two-component system sensor histidine kinase NtrB compare
BWI76_RS21340 -0.9 -1.8 SoxR reducing system protein RseC compare
BWI76_RS06735 -0.9 -1.9 50S ribosomal protein L31 compare
BWI76_RS24900 -0.9 -1.6 DeoR family transcriptional regulator compare
BWI76_RS24280 -0.9 -2.9 biopolymer transporter ExbB compare
BWI76_RS25065 -0.9 -2.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS05135 -0.9 -1.9 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS24960 -0.9 -4.5 N-acetyltransferase compare
BWI76_RS16215 -0.9 -2.9 hypothetical protein compare
BWI76_RS24275 -0.9 -3.6 biopolymer transport protein ExbD compare
BWI76_RS14915 -0.9 -1.4 hypothetical protein compare
BWI76_RS01350 -0.9 -1.0 NAD(P)H-flavin reductase compare
BWI76_RS02990 -0.9 -3.6 aspartate carbamoyltransferase regulatory subunit compare
BWI76_RS26075 -0.9 -2.5 DNA adenine methylase compare
BWI76_RS17000 -0.9 -4.4 Fe-S cluster assembly scaffold SufA compare
BWI76_RS02610 -0.8 -4.0 transcriptional regulator compare
BWI76_RS17300 -0.8 -1.3 tRNA-Tyr compare
BWI76_RS11610 -0.8 -1.8 glutamate dehydrogenase compare
BWI76_RS20925 -0.8 -2.5 peptidase M48 compare
BWI76_RS00875 -0.8 -4.6 DNA-binding transcriptional regulator FabR compare
BWI76_RS20440 -0.8 -1.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS12550 -0.8 -2.2 hypothetical protein compare
BWI76_RS25070 -0.8 -1.4 hypothetical protein compare
BWI76_RS26980 -0.8 -2.5 cold-shock protein compare
BWI76_RS05125 -0.8 -5.1 ferrichrome porin FhuA compare
BWI76_RS20340 -0.8 -2.4 histidine ABC transporter substrate-binding protein HisJ compare
BWI76_RS17190 -0.8 -1.5 TonB system transport protein TonB compare
BWI76_RS21000 -0.8 -3.8 exopolyphosphatase compare
BWI76_RS27440 -0.8 -2.6 DNA helicase RecG compare
BWI76_RS18190 -0.8 -2.1 carboxy-S-adenosyl-L-methionine synthase CmoA compare
BWI76_RS14050 -0.8 -2.1 AP endonuclease, family 2 compare
BWI76_RS22645 -0.8 -2.6 RNA polymerase sigma factor RpoS compare
BWI76_RS01995 -0.8 -1.2 AraC family transcriptional regulator compare
BWI76_RS10470 -0.8 -2.9 iron ABC transporter substrate-binding protein compare
BWI76_RS06770 -0.8 -5.2 Hha toxicity attenuator compare
BWI76_RS01790 -0.8 -5.0 lysine-sensitive aspartokinase 3 compare
BWI76_RS05075 -0.8 -1.1 type II secretion system protein GspG compare
BWI76_RS16025 -0.8 -1.4 triphosphoribosyl-dephospho-CoA synthase compare
BWI76_RS02530 -0.8 -1.0 tRNA dimethylallyltransferase compare
BWI76_RS13240 -0.8 -1.1 hypothetical protein compare
BWI76_RS23265 -0.8 -2.6 hypothetical protein compare
BWI76_RS19840 -0.8 -1.1 hypothetical protein compare
BWI76_RS21690 -0.8 -1.6 hypothetical protein compare
BWI76_RS00940 -0.7 -4.5 transcriptional regulator HdfR compare
BWI76_RS06485 -0.7 -2.1 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS01630 -0.7 -1.0 16S ribosomal RNA compare
BWI76_RS08530 -0.7 -1.2 protein TolA compare
BWI76_RS00970 -0.7 -2.0 branched chain amino acid aminotransferase compare
BWI76_RS09515 -0.7 -1.5 arginine ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms