Experiment set12IT045 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) sulfate heptahydrate 0.209 mg/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS07465 +1.7 4.1 TetR family transcriptional regulator compare
BWI76_RS20995 +1.5 7.7 RNA degradosome polyphosphate kinase compare
BWI76_RS26095 +1.4 3.9 shikimate kinase compare
BWI76_RS00140 +1.3 2.7 phosphate transport system regulator PhoU compare
BWI76_RS22120 +1.2 6.0 glutamate--cysteine ligase compare
BWI76_RS12170 +1.1 3.5 hypothetical protein compare
BWI76_RS27675 +1.1 6.2 EmrB/QacA family drug resistance transporter compare
BWI76_RS24075 +1.1 4.4 glutathione synthase compare
BWI76_RS02180 +1.1 2.5 hypothetical protein compare
BWI76_RS16675 +1.0 3.0 ABC transporter compare
BWI76_RS16200 +1.0 2.8 NAD(P) transhydrogenase subunit beta compare
BWI76_RS08275 +1.0 2.8 LexA regulated protein compare
BWI76_RS10755 +1.0 2.3 pyrimidine utilization flavin reductase protein F compare
BWI76_RS26685 +1.0 4.6 glutathione-disulfide reductase compare
BWI76_RS26045 +0.9 2.7 nitrite reductase small subunit compare
BWI76_RS00025 +0.9 1.5 hypothetical protein compare
BWI76_RS02440 +0.9 1.7 fumarate reductase subunit D compare
BWI76_RS17080 +0.9 4.8 hypothetical protein compare
BWI76_RS08350 +0.9 1.4 carboxylase compare
BWI76_RS03595 +0.9 1.4 ethanolamine utilization protein EutM compare
BWI76_RS01070 +0.9 5.6 thiol reductase thioredoxin compare
BWI76_RS09110 +0.8 3.7 glutathione ABC transporter permease GsiD compare
BWI76_RS01775 +0.8 1.7 hypothetical protein compare
BWI76_RS12045 +0.8 2.0 hypothetical protein compare
BWI76_RS12145 +0.8 2.3 hypothetical protein compare
BWI76_RS21370 +0.8 2.0 ATP-dependent RNA helicase SrmB compare
BWI76_RS13030 +0.8 2.2 site-specific recombinase, phage integrase family protein compare
BWI76_RS18540 +0.8 4.0 signal transduction protein PmrD compare
BWI76_RS16300 +0.7 2.1 bifunctional beta-cystathionase/maltose regulon regulatory protein compare
BWI76_RS22815 +0.7 6.2 hybrid sensor histidine kinase/response regulator compare
BWI76_RS20720 +0.7 1.9 hypothetical protein compare
BWI76_RS07475 +0.7 1.2 DNA-binding transcriptional regulator RamA compare
BWI76_RS15760 +0.7 1.6 hypothetical protein compare
BWI76_RS07510 +0.7 1.6 hypothetical protein compare
BWI76_RS13095 +0.7 2.0 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS04850 +0.7 4.3 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS06680 +0.7 1.1 hypothetical protein compare
BWI76_RS15745 +0.7 1.4 hypothetical protein compare
BWI76_RS12895 +0.7 2.6 hypothetical protein compare
BWI76_RS09540 +0.7 2.4 hypothetical protein compare
BWI76_RS22085 +0.6 2.5 L-valine transporter subunit YgaH compare
BWI76_RS12235 +0.6 1.3 hypothetical protein compare
BWI76_RS01890 +0.6 3.3 transcriptional regulator Zur compare
BWI76_RS26875 +0.6 2.1 dipeptide ABC transporter permease DppC compare
BWI76_RS26440 +0.6 1.5 hypothetical protein compare
BWI76_RS16315 +0.6 1.6 SirA-like protein compare
BWI76_RS25475 +0.6 4.7 TIGR02099 family protein compare
BWI76_RS12445 +0.6 2.2 phage shock protein operon transcriptional activator compare
BWI76_RS09100 +0.6 4.2 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS19770 +0.6 1.8 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS17280 +0.6 2.2 patatin family protein compare
BWI76_RS15190 +0.6 2.4 GGDEF domain-containing protein compare
BWI76_RS10310 +0.6 2.4 DNA-binding transcriptional regulator RamA compare
BWI76_RS11300 +0.6 1.1 cupin compare
BWI76_RS11700 +0.6 1.1 hypothetical protein compare
BWI76_RS11170 +0.6 1.2 hypothetical protein compare
BWI76_RS02655 +0.6 1.9 hypothetical protein compare
BWI76_RS11150 +0.6 1.0 membrane protein compare
BWI76_RS11445 +0.6 3.0 hypothetical protein compare
BWI76_RS03025 +0.6 1.8 N-acetyltransferase compare
BWI76_RS22640 +0.6 1.5 hypothetical protein compare
BWI76_RS15845 +0.6 0.9 hypothetical protein compare
BWI76_RS19100 +0.6 3.2 putative acid phosphatase compare
BWI76_RS18575 +0.6 1.2 transcriptional regulator compare
BWI76_RS23015 +0.6 1.4 cobalt transporter ATP-binding subunit compare
BWI76_RS01515 +0.6 2.6 PTS family cellobiose transporter subunit IIA compare
BWI76_RS06075 +0.6 2.2 taurine transporter subunit compare
BWI76_RS19670 +0.6 2.2 S-formylglutathione hydrolase compare
BWI76_RS14075 +0.6 1.3 TetR family transcriptional regulator compare
BWI76_RS07095 +0.6 1.8 ribosome-associated protein compare
BWI76_RS06520 +0.6 2.4 trigger factor compare
BWI76_RS08310 +0.6 1.4 potassium-transporting ATPase subunit C compare
BWI76_RS25910 +0.6 1.9 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS17775 +0.6 2.4 hypothetical protein compare
BWI76_RS09490 +0.5 2.1 DNA-binding response regulator compare
BWI76_RS20560 +0.5 2.4 hypothetical protein compare
BWI76_RS11970 +0.5 3.4 stress response translation initiation inhibitor YciH compare
BWI76_RS17915 +0.5 1.7 membrane protein compare
BWI76_RS09975 +0.5 1.8 cell division inhibitor SulA compare
BWI76_RS03295 +0.5 1.6 transposase compare
BWI76_RS26580 +0.5 2.2 universal stress protein A compare
BWI76_RS13775 +0.5 1.7 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS20750 +0.5 1.0 carboxysome structural protein EutK compare
BWI76_RS07640 +0.5 1.3 short chain dehydrogenase compare
BWI76_RS04705 +0.5 2.4 DNA-binding transcriptional regulator FruR compare
BWI76_RS00450 +0.5 2.0 formate dehydrogenase accessory protein FdhE compare
BWI76_RS06570 +0.5 2.0 thiamin pyrimidine pyrophosphate hydrolase compare
BWI76_RS16355 +0.5 1.2 electron transport complex subunit A compare
BWI76_RS10985 +0.5 3.0 DNA damage-inducible protein I compare
BWI76_RS19605 +0.5 2.0 CidB/LrgB family autolysis modulator compare
BWI76_RS06585 +0.5 3.2 multidrug ABC transporter permease/ATP-binding protein compare
BWI76_RS16210 +0.5 0.6 hypothetical protein compare
BWI76_RS18360 +0.5 1.0 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS12385 +0.5 2.4 DNA polymerase V subunit UmuC compare
BWI76_RS11980 +0.5 1.1 DeoR family transcriptional regulator compare
BWI76_RS07385 +0.5 1.1 short-chain dehydrogenase/reductase SDR compare
BWI76_RS12420 +0.5 0.9 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS18125 +0.5 2.6 murein DD-endopeptidase MepM compare
BWI76_RS09830 +0.5 1.5 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
BWI76_RS10330 +0.5 2.2 TetR family transcriptional regulator compare
BWI76_RS16970 +0.5 2.2 murein L,D-transpeptidase compare
BWI76_RS21715 +0.5 1.6 transcriptional regulator compare
BWI76_RS11030 +0.5 2.2 MFS transporter compare
BWI76_RS22685 +0.5 2.4 hypothetical protein compare
BWI76_RS10245 +0.5 1.5 aspartate aminotransferase compare
BWI76_RS23300 +0.5 2.7 YgdI/YgdR family lipoprotein compare
BWI76_RS16680 +0.5 1.8 ABC transporter substrate-binding protein compare
BWI76_RS15705 +0.5 1.9 putative holin protein compare
BWI76_RS19560 +0.5 2.8 beta-1,4-xylanase compare
BWI76_RS04980 +0.5 1.8 hypothetical protein compare
BWI76_RS24955 +0.5 1.7 hypothetical protein compare
BWI76_RS07455 +0.5 2.3 NAD(P)H nitroreductase compare
BWI76_RS10845 +0.5 2.4 DNA-binding response regulator compare
BWI76_RS14435 +0.5 1.2 glutamine ABC transporter ATP-binding protein compare
BWI76_RS25485 +0.5 1.2 septum formation protein Maf compare
BWI76_RS06590 +0.5 2.3 multidrug ABC transporter permease/ATP-binding protein compare
BWI76_RS06785 +0.5 2.0 DNA-binding transcriptional repressor AcrR compare
BWI76_RS06665 +0.5 0.6 membrane protein compare
BWI76_RS06410 +0.5 2.6 YajQ family cyclic di-GMP-binding protein compare
BWI76_RS04915 +0.5 1.6 hypothetical protein compare
BWI76_RS14625 +0.5 1.0 protein TolA compare
BWI76_RS11455 +0.5 2.1 AraC family transcriptional regulator compare
BWI76_RS05515 +0.5 1.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
BWI76_RS12260 +0.5 2.6 hypothetical protein compare
BWI76_RS18605 +0.5 0.9 oxidoreductase molybdopterin-binding protein compare
BWI76_RS05445 +0.5 2.4 type 11 methyltransferase compare
BWI76_RS09240 +0.5 1.7 phosphoadenosine phosphosulfate reductase compare
BWI76_RS27820 +0.5 1.3 ilvB operon leader peptide IvbL compare
BWI76_RS20145 +0.5 1.2 NADH-quinone oxidoreductase subunit K compare
BWI76_RS19785 +0.5 1.4 microcin C ABC transporter permease YejB compare
BWI76_RS12875 +0.5 2.2 bifunctional deaminase-reductase compare
BWI76_RS16715 +0.5 3.7 hypothetical protein compare
BWI76_RS12595 +0.5 1.1 hypothetical protein compare
BWI76_RS11060 +0.5 1.1 septum formation inhibitor Maf compare
BWI76_RS09450 +0.4 1.5 30S ribosomal protein S6--L-glutamate ligase compare
BWI76_RS11110 +0.4 1.5 cell division protein YceG compare
BWI76_RS00795 +0.4 0.9 carboxymuconolactone decarboxylase compare
BWI76_RS20270 +0.4 3.0 hypothetical protein compare
BWI76_RS27350 +0.4 2.3 hypothetical protein compare
BWI76_RS10855 +0.4 1.9 RND family efflux transporter MFP subunit compare
BWI76_RS15600 +0.4 1.3 hypothetical protein compare
BWI76_RS09155 +0.4 2.6 undecaprenyl-diphosphatase compare
BWI76_RS23030 +0.4 1.2 cobalamin biosynthesis protein CbiM compare
BWI76_RS10870 +0.4 2.4 nicotinamidase compare
BWI76_RS15800 +0.4 1.8 transcriptional regulator compare
BWI76_RS15740 +0.4 1.6 HNH endonuclease compare
BWI76_RS13170 +0.4 1.2 methyltransferase compare
BWI76_RS07600 +0.4 2.4 aspartate aminotransferase family protein compare
BWI76_RS19865 +0.4 0.8 ecotin compare
BWI76_RS11405 +0.4 3.0 lipid A biosynthesis acyltransferase compare
BWI76_RS01650 +0.4 1.1 acetyltransferase compare
BWI76_RS22420 +0.4 1.9 LacI family transcriptional regulator compare
BWI76_RS10040 +0.4 1.2 heat-shock protein HspQ compare
BWI76_RS12825 +0.4 1.4 hypothetical protein compare
BWI76_RS14725 +0.4 1.4 HxlR family transcriptional regulator compare
BWI76_RS26755 +0.4 3.1 peptidase M16 compare
BWI76_RS18335 +0.4 2.7 DNA-binding response regulator compare
BWI76_RS07875 +0.4 2.5 dihydrofolate reductase compare
BWI76_RS27960 +0.4 2.1 alcohol dehydrogenase protein compare
BWI76_RS10665 +0.4 1.7 PTS system fructose-like transporter subunit EIIB compare
BWI76_RS10910 +0.4 1.1 hypothetical protein compare
BWI76_RS27605 +0.4 1.5 hypothetical protein compare
BWI76_RS06265 +0.4 2.0 antibiotic biosynthesis monooxygenase compare
BWI76_RS03825 +0.4 2.0 4-hydroxyphenylacetate 3-monooxygenase compare
BWI76_RS16775 +0.4 2.3 malate/lactate/ureidoglycolate dehydrogenase compare
BWI76_RS11365 +0.4 1.3 iron ABC transporter compare
BWI76_RS01540 +0.4 1.3 thiamine biosynthesis protein ThiS compare
BWI76_RS26255 +0.4 1.7 oxidoreductase compare
BWI76_RS19885 +0.4 2.0 multidrug ABC transporter permease/ATP-binding protein conserved
BWI76_RS05440 +0.4 2.4 hydroxyacylglutathione hydrolase compare
BWI76_RS15000 +0.4 2.0 amino acid ABC transporter ATP-binding protein compare
BWI76_RS19935 +0.4 1.0 hypothetical protein compare
BWI76_RS23125 +0.4 1.1 propanediol dehydratase small subunit compare
BWI76_RS18580 +0.4 0.9 hypothetical protein compare
BWI76_RS19010 +0.4 1.4 polysaccharide pyruvyl transferase yvff compare
BWI76_RS02420 +0.4 2.0 entericidin EcnAB compare
BWI76_RS05465 +0.4 0.9 amidohydrolase compare
BWI76_RS13575 +0.4 1.2 sugar binding transcriptional regulator, LacI family protein compare
BWI76_RS10305 +0.4 2.9 transposase compare
BWI76_RS05655 +0.4 0.8 hypothetical protein compare
BWI76_RS13490 +0.4 1.5 pyrimidine-specific ribonucleoside hydrolase RihA compare
BWI76_RS06370 +0.4 2.3 phosphatidylglycerophosphatase A compare
BWI76_RS17890 +0.4 2.4 PTS mannose transporter subunit EIIAB compare
BWI76_RS06335 +0.4 1.6 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS24750 +0.4 1.5 membrane protein compare
BWI76_RS17970 +0.4 0.8 zinc metalloprotease HtpX compare
BWI76_RS09690 +0.4 1.4 dimethyl sulfoxide reductase compare
BWI76_RS22095 +0.4 1.2 multidrug export protein EmrA compare
BWI76_RS20790 +0.4 1.9 aldehyde dehydrogenase compare
BWI76_RS09305 +0.4 0.7 hypothetical protein compare
BWI76_RS25480 +0.4 1.4 ribonuclease E/G compare
BWI76_RS17555 +0.4 2.2 permease compare
BWI76_RS14325 +0.4 1.2 maturase compare
BWI76_RS12405 +0.4 2.3 diguanylate phosphodiesterase compare
BWI76_RS11155 +0.4 1.3 penicillin-binding protein activator LpoB compare
BWI76_RS14690 +0.4 1.9 SefD compare
BWI76_RS21680 +0.4 1.2 antitoxin of the YeeV-YeeU toxin-antitoxin system compare
BWI76_RS12680 +0.4 1.3 oxidoreductase compare
BWI76_RS11240 +0.4 1.4 spermidine/putrescine ABC transporter substrate-binding protein PotD compare
BWI76_RS25705 +0.4 1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms