Experiment set12IT044 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS07465 +4.4 20.7 TetR family transcriptional regulator compare
BWI76_RS20995 +4.2 24.2 RNA degradosome polyphosphate kinase compare
BWI76_RS22120 +3.2 27.8 glutamate--cysteine ligase compare
BWI76_RS00140 +2.3 5.2 phosphate transport system regulator PhoU compare
BWI76_RS24075 +2.3 7.6 glutathione synthase compare
BWI76_RS22090 +2.2 3.6 transcriptional regulator compare
BWI76_RS26685 +2.2 14.1 glutathione-disulfide reductase compare
BWI76_RS27675 +2.2 12.7 EmrB/QacA family drug resistance transporter compare
BWI76_RS01070 +2.1 16.0 thiol reductase thioredoxin compare
BWI76_RS26095 +2.0 3.3 shikimate kinase compare
BWI76_RS02180 +1.7 1.8 hypothetical protein compare
BWI76_RS17915 +1.4 4.9 membrane protein compare
BWI76_RS06785 +1.4 8.2 DNA-binding transcriptional repressor AcrR compare
BWI76_RS06535 +1.3 7.1 endopeptidase La compare
BWI76_RS25475 +1.3 11.1 TIGR02099 family protein compare
BWI76_RS22815 +1.3 10.5 hybrid sensor histidine kinase/response regulator compare
BWI76_RS18605 +1.1 2.3 oxidoreductase molybdopterin-binding protein compare
BWI76_RS26410 +1.1 2.8 membrane protein compare
BWI76_RS14075 +1.1 2.4 TetR family transcriptional regulator compare
BWI76_RS05005 +1.1 4.3 polynucleotide adenylyltransferase compare
BWI76_RS27425 +1.1 2.3 DNA-directed RNA polymerase subunit omega compare
BWI76_RS06520 +1.1 6.1 trigger factor compare
BWI76_RS18335 +1.0 8.0 DNA-binding response regulator compare
BWI76_RS13095 +1.0 2.4 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS09100 +1.0 5.6 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS12145 +1.0 3.0 hypothetical protein compare
BWI76_RS09335 +1.0 2.1 baseplate assembly protein W compare
BWI76_RS17910 +1.0 3.4 hypothetical protein compare
BWI76_RS02050 +1.0 3.5 CidA/LrgA family protein compare
BWI76_RS12170 +1.0 2.1 hypothetical protein compare
BWI76_RS18885 +0.9 3.1 nitrogen fixation regulatory protein compare
BWI76_RS20360 +0.9 1.5 cell division protein DedD compare
BWI76_RS15190 +0.9 4.4 GGDEF domain-containing protein compare
BWI76_RS01380 +0.9 3.9 YigZ family protein compare
BWI76_RS09110 +0.9 2.1 glutathione ABC transporter permease GsiD compare
BWI76_RS05785 +0.9 1.3 CI repressor compare
BWI76_RS15015 +0.8 1.9 DUF2132 domain-containing protein compare
BWI76_RS00865 +0.8 4.6 DNA-binding transcriptional regulator OxyR compare
BWI76_RS16230 +0.8 3.1 dihydromonapterin reductase compare
BWI76_RS27450 +0.8 3.1 ferredoxin--NADP(+) reductase compare
BWI76_RS21450 +0.8 1.6 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS09290 +0.8 1.5 phage Tail Protein X compare
BWI76_RS24480 +0.8 4.7 undecaprenyl-diphosphatase compare
BWI76_RS08275 +0.8 2.0 LexA regulated protein compare
BWI76_RS10755 +0.8 1.7 pyrimidine utilization flavin reductase protein F compare
BWI76_RS27915 +0.8 2.7 YceK/YidQ family lipoprotein compare
BWI76_RS09540 +0.8 2.5 hypothetical protein compare
BWI76_RS09645 +0.8 1.3 thioredoxin-disulfide reductase compare
BWI76_RS26580 +0.8 3.1 universal stress protein A compare
BWI76_RS06680 +0.8 1.2 hypothetical protein compare
BWI76_RS08980 +0.7 1.4 DNA starvation/stationary phase protection protein compare
BWI76_RS09195 +0.7 1.4 N-acetyltransferase compare
BWI76_RS12780 +0.7 1.3 hypothetical protein compare
BWI76_RS11580 +0.7 2.3 L-asparaginase 1 compare
BWI76_RS27875 +0.7 1.0 membrane protein compare
BWI76_RS16315 +0.7 1.3 SirA-like protein compare
BWI76_RS16675 +0.7 1.1 ABC transporter compare
BWI76_RS15205 +0.7 2.6 succinate-semialdehyde dehydrogenase compare
BWI76_RS12665 +0.7 1.8 hypothetical protein compare
BWI76_RS03105 +0.7 1.3 myo-inosose-2 dehydratase compare
BWI76_RS08720 +0.7 1.8 imidazolonepropionase compare
BWI76_RS09105 +0.7 4.4 glutathione ABC transporter permease GsiC compare
BWI76_RS19935 +0.7 1.6 hypothetical protein compare
BWI76_RS04850 +0.7 3.1 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS24955 +0.7 1.8 hypothetical protein compare
BWI76_RS03045 +0.7 1.3 hypothetical protein compare
BWI76_RS09095 +0.6 4.7 glutathione ABC transporter ATP-binding protein GsiA compare
BWI76_RS18550 +0.6 1.5 tRNA-Asn compare
BWI76_RS23470 +0.6 5.5 hypothetical protein compare
BWI76_RS09960 +0.6 2.0 Lon protease compare
BWI76_RS22475 +0.6 1.8 heme ABC transporter ATP-binding protein compare
BWI76_RS25630 +0.6 2.3 hypothetical protein compare
BWI76_RS21485 +0.6 5.3 DUF4154 domain-containing protein compare
BWI76_RS19860 +0.6 2.2 hypothetical protein compare
BWI76_RS23000 +0.6 2.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BWI76_RS23505 +0.6 5.6 ferrous iron transporter B compare
BWI76_RS21090 +0.6 3.5 cytoskeletal protein RodZ compare
BWI76_RS01775 +0.6 1.1 hypothetical protein compare
BWI76_RS00795 +0.6 1.6 carboxymuconolactone decarboxylase compare
BWI76_RS13755 +0.6 1.7 hypothetical protein compare
BWI76_RS08585 +0.6 1.0 nicotinamide riboside transporter PnuC compare
BWI76_RS02090 +0.6 2.2 membrane protein compare
BWI76_RS23760 +0.6 1.5 tRNA-Gly compare
BWI76_RS10305 +0.6 4.2 transposase compare
BWI76_RS08110 +0.6 2.0 glutamate/aspartate ABC transporter substrate-binding protein compare
BWI76_RS01890 +0.6 3.5 transcriptional regulator Zur compare
BWI76_RS07475 +0.6 0.9 DNA-binding transcriptional regulator RamA compare
BWI76_RS15535 +0.6 1.4 hypothetical protein compare
BWI76_RS08840 +0.6 1.0 hypothetical protein compare
BWI76_RS02855 +0.6 1.7 cytochrome B562 compare
BWI76_RS22185 +0.6 2.8 hypothetical protein compare
BWI76_RS07595 +0.6 1.5 putative oxidoreductase compare
BWI76_RS07970 +0.6 2.6 hypothetical protein compare
BWI76_RS13490 +0.6 2.1 pyrimidine-specific ribonucleoside hydrolase RihA compare
BWI76_RS26440 +0.6 1.2 hypothetical protein compare
BWI76_RS10500 +0.6 2.0 flavoprotein monooxygenase compare
BWI76_RS22685 +0.6 2.3 hypothetical protein compare
BWI76_RS13785 +0.6 1.0 ABC transporter permease compare
BWI76_RS20810 +0.6 2.3 ethanolamine utilization cobalamin adenosyltransferase compare
BWI76_RS15845 +0.6 0.9 hypothetical protein compare
BWI76_RS07075 +0.6 1.3 hypothetical protein compare
BWI76_RS16655 +0.6 1.8 CatA-like O-acetyltransferase compare
BWI76_RS13330 +0.6 1.2 tellurite resistance methyltransferase TehB compare
BWI76_RS09155 +0.6 3.1 undecaprenyl-diphosphatase compare
BWI76_RS09390 +0.6 1.8 phage tail protein compare
BWI76_RS13880 +0.6 2.0 lysine transporter LysE compare
BWI76_RS14980 +0.6 1.6 hypothetical protein compare
BWI76_RS23705 +0.6 1.1 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS11680 +0.6 2.0 succinylglutamate-semialdehyde dehydrogenase compare
BWI76_RS23680 +0.6 1.8 ribokinase compare
BWI76_RS12485 +0.6 1.8 TyrR family transcriptional regulator compare
BWI76_RS05680 +0.6 2.4 LacI family transcriptional regulator compare
BWI76_RS25280 +0.6 1.6 RNase adaptor protein RapZ compare
BWI76_RS23300 +0.6 2.3 YgdI/YgdR family lipoprotein compare
BWI76_RS26785 +0.5 4.0 UDP-forming cellulose synthase catalytic subunit compare
BWI76_RS11915 +0.5 3.6 protease SohB compare
BWI76_RS08515 +0.5 1.6 acyl-CoA thioesterase YbgC compare
BWI76_RS16920 +0.5 1.2 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS15825 +0.5 0.9 hypothetical protein compare
BWI76_RS23495 +0.5 4.1 hypothetical protein compare
BWI76_RS18360 +0.5 1.5 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS04055 +0.5 4.7 GGDEF domain-containing protein compare
BWI76_RS23500 +0.5 4.6 hypothetical protein compare
BWI76_RS23015 +0.5 1.2 cobalt transporter ATP-binding subunit compare
BWI76_RS09520 +0.5 1.5 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS26810 +0.5 3.7 cellulose biosynthesis protein BcsG compare
BWI76_RS24080 +0.5 1.1 DUF179 domain-containing protein compare
BWI76_RS19480 +0.5 1.7 transcriptional regulator compare
BWI76_RS03520 +0.5 4.8 diguanylate cyclase compare
BWI76_RS10055 +0.5 2.2 AraC family transcriptional regulator compare
BWI76_RS14810 +0.5 2.7 carboxymuconolactone decarboxylase compare
BWI76_RS13850 +0.5 1.9 N-acetyltransferase compare
BWI76_RS22085 +0.5 1.8 L-valine transporter subunit YgaH compare
BWI76_RS21310 +0.5 0.8 DNA repair protein RecO compare
BWI76_RS13215 +0.5 1.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS26790 +0.5 2.6 cell division protein compare
BWI76_RS20970 +0.5 1.2 phosphoribosylglycinamide formyltransferase compare
BWI76_RS17075 +0.5 2.1 3-deoxy-7-phosphoheptulonate synthase compare
BWI76_RS26780 +0.5 3.4 cellulose synthase regulator BcsB compare
BWI76_RS23025 +0.5 2.0 cobalt ABC transporter substrate-binding protein CbiN compare
BWI76_RS18420 +0.5 3.8 DNA (cytosine-5-)-methyltransferase compare
BWI76_RS10590 +0.5 2.5 class V aminotransferase compare
BWI76_RS04600 +0.5 2.1 inner membrane protein compare
BWI76_RS09530 +0.5 0.9 hypothetical protein compare
BWI76_RS04970 +0.5 2.9 ABC transporter permease compare
BWI76_RS18540 +0.5 3.1 signal transduction protein PmrD compare
BWI76_RS16195 +0.5 1.3 hypothetical protein compare
BWI76_RS03630 +0.5 2.4 LysR family transcriptional regulator compare
BWI76_RS17820 +0.5 1.3 hypothetical protein compare
BWI76_RS26355 +0.5 2.5 hypothetical protein compare
BWI76_RS17970 +0.5 1.6 zinc metalloprotease HtpX compare
BWI76_RS17025 +0.5 2.7 putative major type 1 subunit fimbrin compare
BWI76_RS20250 +0.5 2.0 hypothetical protein compare
BWI76_RS17110 +0.5 1.1 vitamin B12 ABC transporter permease BtuC compare
BWI76_RS01835 +0.5 1.6 chemotaxis protein CheW compare
BWI76_RS21490 +0.5 3.7 GGDEF domain-containing protein compare
BWI76_RS02445 +0.5 2.1 fumarate reductase subunit C compare
BWI76_RS21690 +0.5 1.4 hypothetical protein compare
BWI76_RS04625 +0.5 2.6 glucose uptake inhibitor SgrT compare
BWI76_RS14670 +0.5 1.4 hypothetical protein compare
BWI76_RS06585 +0.5 3.2 multidrug ABC transporter permease/ATP-binding protein compare
BWI76_RS15565 +0.5 1.3 hypothetical protein compare
BWI76_RS06745 +0.5 1.8 N-acetyltransferase GCN5 compare
BWI76_RS01660 +0.5 2.4 malate synthase A compare
BWI76_RS02870 +0.5 2.3 hypothetical protein compare
BWI76_RS11375 +0.4 2.7 iron-dicitrate transporter permease subunit compare
BWI76_RS19470 +0.4 1.3 DNA-binding response regulator compare
BWI76_RS18080 +0.4 1.1 protein YebE compare
BWI76_RS11820 +0.4 0.9 short-chain dehydrogenase/reductase SDR compare
BWI76_RS23490 +0.4 3.2 fimbrial protein compare
BWI76_RS17345 +0.4 1.2 nitrate/nitrite two-component system sensor histidine kinase NarX compare
BWI76_RS22245 +0.4 2.5 arabinose 5-phosphate isomerase GutQ compare
BWI76_RS16645 +0.4 1.3 DeoR family transcriptional regulator compare
BWI76_RS24515 +0.4 2.0 urease accessory protein UreE compare
BWI76_RS14970 +0.4 1.1 pyrroline-5-carboxylate reductase compare
BWI76_RS10015 +0.4 2.3 putative outer membrane efflux protein compare
BWI76_RS06665 +0.4 1.4 membrane protein compare
BWI76_RS11805 +0.4 1.7 hypothetical protein compare
BWI76_RS15275 +0.4 3.0 isomerase compare
BWI76_RS27395 +0.4 1.9 hypothetical protein compare
BWI76_RS00025 +0.4 0.6 hypothetical protein compare
BWI76_RS03815 +0.4 1.7 hypothetical protein compare
BWI76_RS13160 +0.4 1.1 azoreductase compare
BWI76_RS12585 +0.4 1.4 transcriptional regulator compare
BWI76_RS21220 +0.4 1.8 membrane protein compare
BWI76_RS07955 +0.4 2.4 nucleoside diphosphate kinase regulator compare
BWI76_RS20640 +0.4 1.4 cysteine synthase A compare
BWI76_RS01930 +0.4 1.6 acid phosphatase/phosphotransferase compare
BWI76_RS22350 +0.4 1.4 hydrogenase nickel incorporation protein HypB compare
BWI76_RS14015 +0.4 1.4 L-2,4-diaminobutyrate decarboxylase compare
BWI76_RS12375 +0.4 1.7 DNA-invertase hin compare
BWI76_RS18855 +0.4 1.6 cysteine desulfurase NifS compare
BWI76_RS19790 +0.4 2.1 putative binding-protein-dependent transporter compare
BWI76_RS19100 +0.4 2.0 putative acid phosphatase compare
BWI76_RS20085 +0.4 1.5 GNAT family N-acetyltransferase compare
BWI76_RS09705 +0.4 2.6 transketolase compare
BWI76_RS15600 +0.4 1.2 hypothetical protein compare
BWI76_RS24260 +0.4 1.4 hypothetical protein compare
BWI76_RS16030 +0.4 1.5 malonate decarboxylase acyl carrier protein compare
BWI76_RS24150 +0.4 2.2 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted across organisms