Experiment set12IT044 for Herbaspirillum seropedicae SmR1

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
HSERO_RS02330 -5.8 -6.7 aspartate carbamoyltransferase compare
HSERO_RS21035 -5.7 -2.8 hypothetical protein compare
HSERO_RS21010 -5.4 -5.2 LPS biosynthesis protein compare
HSERO_RS21005 -5.4 -7.3 asparagine synthase compare
HSERO_RS20630 -4.8 -2.8 phenylacetic acid degradation protein compare
HSERO_RS21025 -4.4 -6.1 hypothetical protein compare
HSERO_RS20985 -4.2 -1.3 serine acetyltransferase compare
HSERO_RS21065 -4.2 -8.2 hypothetical protein compare
HSERO_RS17980 -4.0 -2.3 GTP-binding protein compare
HSERO_RS21040 -4.0 -4.8 3-oxoacyl-ACP synthase compare
HSERO_RS23945 -3.9 -2.5 cobyric acid synthase CobQ compare
HSERO_RS20970 -3.9 -9.8 NDP-N-acetyl-D-mannosaminuronate dehydrogenase compare
HSERO_RS20990 -3.9 -5.8 aminotransferase DegT compare
HSERO_RS17155 -3.8 -3.2 RNA helicase compare
HSERO_RS20980 -3.7 -3.3 oxidoreductase compare
HSERO_RS16070 -3.5 -1.8 cytochrome biogenesis protein compare
HSERO_RS12975 -3.5 -1.4 phytoene synthase compare
HSERO_RS10460 -3.5 -1.4 homoserine dehydrogenase compare
HSERO_RS15630 -3.4 -1.0 exodeoxyribonuclease III compare
HSERO_RS03285 -3.2 -1.3 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS09455 -3.1 -3.2 NAD synthetase compare
HSERO_RS21060 -2.8 -5.2 hypothetical protein compare
HSERO_RS23475 -2.8 -4.2 hydroxymethylglutaryl-CoA lyase compare
HSERO_RS16035 -2.7 -2.5 cytochrome C oxidase compare
HSERO_RS04325 -2.7 -6.2 helicase I compare
HSERO_RS21640 -2.7 -2.7 recombinase RdgC compare
HSERO_RS03450 -2.7 -1.9 energy transducer protein TonB compare
HSERO_RS08530 -2.6 -3.4 glycine/betaine ABC transporter permease compare
HSERO_RS02205 -2.5 -2.1 phosphatase compare
HSERO_RS08535 -2.4 -4.0 glycine/betaine ABC transporter substrate-binding protein compare
HSERO_RS20975 -2.4 -6.4 UDP-galactose-4-epimerase compare
HSERO_RS21000 -2.3 -5.2 aminotransferase DegT compare
HSERO_RS10125 -2.3 -4.1 chemotaxis protein compare
HSERO_RS05540 -2.3 -1.5 cytochrome C' compare
HSERO_RS14640 -2.3 -7.6 peptide chain release factor 3 compare
HSERO_RS10405 -2.3 -1.8 phosphate starvation protein PhoH compare
HSERO_RS20345 -2.3 -3.5 histidinol dehydrogenase compare
HSERO_RS17105 -2.3 -1.6 DNA polymerase III subunit epsilon compare
HSERO_RS19590 -2.3 -0.9 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS04330 -2.2 -6.7 ATP-dependent exonuclease compare
HSERO_RS14955 -2.2 -4.3 chemotaxis protein compare
HSERO_RS03595 -2.2 -2.8 cation transporter compare
HSERO_RS14025 -2.2 -2.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS20615 -2.2 -2.2 phenylacetate-CoA oxygenase subunit PaaB compare
HSERO_RS00815 -2.2 -2.1 sulfurtransferase compare
HSERO_RS03085 -2.1 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS04265 -2.1 -1.2 tyrosine recombinase XerD compare
HSERO_RS17110 -2.0 -1.4 ribonuclease H compare
HSERO_RS07970 -2.0 -1.7 formyltetrahydrofolate deformylase compare
HSERO_RS21080 -2.0 -4.3 glycosyl transferase compare
HSERO_RS10340 -2.0 -3.5 flagellar biosynthesis protein FliS compare
HSERO_RS08105 -1.9 -4.4 sodium:proton antiporter compare
HSERO_RS18455 -1.9 -2.6 phosphoglycolate phosphatase compare
HSERO_RS15070 -1.9 -0.8 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS16475 -1.9 -1.4 tryptophan synthase subunit alpha compare
HSERO_RS14840 -1.9 -3.1 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS20315 -1.9 -3.2 imidazole glycerol phosphate synthase compare
HSERO_RS02015 -1.9 -3.3 peptidase M23 compare
HSERO_RS17900 -1.9 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS20625 -1.8 -0.8 phenylacetate-CoA oxygenase compare
HSERO_RS13960 -1.8 -1.4 hypothetical protein compare
HSERO_RS07300 -1.8 -2.9 glutamate--cysteine ligase compare
HSERO_RS20350 -1.8 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS12300 -1.7 -2.5 hypothetical protein compare
HSERO_RS10400 -1.7 -5.6 inorganic phosphate transporter compare
HSERO_RS12220 -1.7 -1.2 dehydrogenase compare
HSERO_RS07890 -1.7 -1.8 hypothetical protein compare
HSERO_RS16075 -1.7 -1.1 coproporphyrinogen III oxidase compare
HSERO_RS20310 -1.7 -2.2 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS20330 -1.7 -3.3 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS10230 -1.7 -5.1 flagellar hook-filament junction protein compare
HSERO_RS08115 -1.6 -0.9 acyl-CoA-binding protein compare
HSERO_RS17530 -1.6 -2.3 RpiR family transcriptional regulator compare
HSERO_RS09050 -1.6 -2.5 2-aminoadipate aminotransferase compare
HSERO_RS00965 -1.6 -0.8 trehalose-phosphatase compare
HSERO_RS01870 -1.6 -4.3 ABC transporter permease compare
HSERO_RS11170 -1.6 -2.7 ABC transporter ATP-binding protein compare
HSERO_RS10165 -1.6 -1.4 flagellar biosynthesis protein compare
HSERO_RS16420 -1.6 -4.3 phosphoesterase compare
HSERO_RS21055 -1.6 -2.0 hypothetical protein compare
HSERO_RS02545 -1.6 -1.4 membrane protein compare
HSERO_RS10160 -1.5 -5.6 flagellar biosynthesis sigma factor compare
HSERO_RS17815 -1.5 -0.9 glycosyl transferase compare
HSERO_RS09155 -1.5 -4.0 DNA topoisomerase IV subunit B compare
HSERO_RS18990 -1.5 -1.8 pyrroline-5-carboxylate reductase compare
HSERO_RS20405 -1.5 -3.6 GTP-binding protein YchF compare
HSERO_RS00080 -1.5 -5.8 histidine kinase compare
HSERO_RS15665 -1.5 -0.7 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS08660 -1.5 -4.1 ketol-acid reductoisomerase compare
HSERO_RS08335 -1.5 -2.1 4-hydroxyphenylpyruvate dioxygenase compare
HSERO_RS20325 -1.5 -3.1 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS13560 -1.5 -3.6 transcriptional regulator compare
HSERO_RS02350 -1.4 -4.1 diadenosine tetraphosphatase compare
HSERO_RS21450 -1.4 -2.0 lipid A biosynthesis acyltransferase compare
HSERO_RS03445 -1.4 -3.5 biopolymer transport transmembrane protein compare
HSERO_RS18600 -1.4 -1.1 transcriptional regulator compare
HSERO_RS01815 -1.4 -3.0 gamma-glutamyl kinase compare
HSERO_RS12210 -1.4 -6.6 GntR family transcriptional regulator compare
HSERO_RS09205 -1.4 -1.9 glutathione ABC transporter permease compare
HSERO_RS18045 -1.4 -0.9 hypothetical protein compare
HSERO_RS18010 -1.4 -0.5 pseudouridine synthase compare
HSERO_RS12015 -1.4 -1.1 molecular chaperone DnaK compare
HSERO_RS09650 -1.3 -1.5 elongation factor 4 compare
HSERO_RS08635 -1.3 -3.3 hypothetical protein compare
HSERO_RS21095 -1.3 -4.3 UDP-glucose 4-epimerase compare
HSERO_RS03270 -1.3 -2.3 protein RecA compare
HSERO_RS03440 -1.3 -3.1 biopolymer transporter ExbD compare
HSERO_RS21380 -1.3 -4.4 MFS transporter compare
HSERO_RS22175 -1.3 -0.9 hypothetical protein compare
HSERO_RS15435 -1.3 -1.9 enoyl-CoA hydratase compare
HSERO_RS10225 -1.3 -6.7 flagellar hook protein FlgK compare
HSERO_RS19450 -1.3 -2.9 indole-3-glycerol-phosphate synthase compare
HSERO_RS00435 -1.3 -2.4 glutathione synthetase compare
HSERO_RS17770 -1.3 -3.9 nicotinate-nucleotide adenylyltransferase compare
HSERO_RS02325 -1.3 -6.6 uracil phosphoribosyltransferase compare
HSERO_RS09660 -1.3 -1.7 ribonuclease III compare
HSERO_RS16835 -1.3 -3.2 phosphatidylglycerophosphatase compare
HSERO_RS16370 -1.3 -1.0 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS15655 -1.3 -1.1 methylcitrate synthase compare
HSERO_RS22325 -1.3 -1.7 hypothetical protein compare
HSERO_RS21075 -1.3 -3.6 asparagine synthase compare
HSERO_RS03510 -1.3 -2.1 proline aminopeptidase P II compare
HSERO_RS08790 -1.3 -0.7 hypothetical protein compare
HSERO_RS21540 -1.3 -1.8 alkyl hydroperoxide reductase subunit C compare
HSERO_RS06170 -1.2 -1.4 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS15600 -1.2 -5.0 cytosol aminopeptidase compare
HSERO_RS04860 -1.2 -0.8 sugar ABC transporter permease compare
HSERO_RS12770 -1.2 -1.4 3-oxoacyl-ACP reductase compare
HSERO_RS15835 -1.2 -1.0 aspartate aminotransferase compare
HSERO_RS13275 -1.2 -1.2 cobalamin biosynthesis protein CbiG compare
HSERO_RS13965 -1.2 -1.1 single-stranded DNA exonuclease compare
HSERO_RS19525 -1.2 -1.1 PTS sugar transporter subunit IIA compare
HSERO_RS23655 -1.2 -1.2 phosphonate ABC transporter permease compare
HSERO_RS15840 -1.2 -4.9 excinuclease ABC subunit B compare
HSERO_RS10290 -1.2 -4.4 flagellar biosynthesis protein FliJ compare
HSERO_RS19815 -1.2 -5.2 phytanoyl-CoA dioxygenase compare
HSERO_RS20355 -1.2 -4.0 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS20320 -1.2 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS21090 -1.2 -2.7 dTDP-4-dehydrorhamnose reductase compare
HSERO_RS00795 -1.2 -2.0 glycerol-3-phosphate dehydrogenase compare
HSERO_RS15530 -1.2 -2.2 chemotaxis protein CheZ compare
HSERO_RS13660 -1.2 -1.3 membrane protein compare
HSERO_RS10200 -1.2 -5.3 flagellar basal body rod protein FlgF compare
HSERO_RS10265 -1.2 -3.3 flagellar biosynthesis protein FliO compare
HSERO_RS21530 -1.2 -3.2 cytochrome C550 compare
HSERO_RS04335 -1.2 -1.6 sodium:proton antiporter compare
HSERO_RS08290 -1.2 -2.3 leucine/isoleucine/valine transporter ATP-binding subunit compare
HSERO_RS14185 -1.2 -1.1 FeS cluster assembly scaffold IscU compare
HSERO_RS21085 -1.2 -6.5 glycosyl transferase family 1 compare
HSERO_RS10285 -1.1 -3.5 flagellar hook-length control protein compare
HSERO_RS02425 -1.1 -5.7 transcriptional activator compare
HSERO_RS05515 -1.1 -0.3 glucose-6-phosphate isomerase compare
HSERO_RS18365 -1.1 -2.6 hypothetical protein compare
HSERO_RS03235 -1.1 -1.0 hypothetical protein compare
HSERO_RS10315 -1.1 -4.8 flagellar hook-basal body protein FliE compare
HSERO_RS10395 -1.1 -1.4 phosphate transport regulator compare
HSERO_RS22100 -1.1 -5.4 hypothetical protein compare
HSERO_RS11155 -1.1 -3.3 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS14960 -1.1 -0.9 Fis family transcriptional regulator compare
HSERO_RS16015 -1.1 -2.8 fatty acid desaturase compare
HSERO_RS19805 -1.1 -4.7 glycosyl transferase compare
HSERO_RS02215 -1.1 -0.3 D-arabinitol 4-dehydrogenase compare
HSERO_RS23440 -1.1 -2.7 isovaleryl-CoA dehydrogenase compare
HSERO_RS10310 -1.1 -4.9 flagellar M-ring protein FliF compare
HSERO_RS07155 -1.1 -2.9 peptidase C69 compare
HSERO_RS10140 -1.1 -5.7 flagellar biosynthesis protein FlhB compare
HSERO_RS03145 -1.1 -4.4 poly(A) polymerase compare
HSERO_RS02255 -1.1 -1.6 decarboxylase compare
HSERO_RS21665 -1.1 -2.5 oxygen-insensitive nitroreductase compare
HSERO_RS10305 -1.1 -3.8 flagellar motor switch protein FliG compare
HSERO_RS16840 -1.1 -2.1 competence damage-inducible protein A compare
HSERO_RS08075 -1.0 -0.8 ferredoxin compare
HSERO_RS04165 -1.0 -0.9 hypothetical protein compare
HSERO_RS02760 -1.0 -1.1 hypothetical protein compare
HSERO_RS20235 -1.0 -0.6 cytochrome C compare
HSERO_RS10205 -1.0 -4.2 flagellar basal body rod protein FlgG compare
HSERO_RS13280 -1.0 -1.9 precorrin-4 C11-methyltransferase compare
HSERO_RS22980 -1.0 -5.3 membrane protein compare
HSERO_RS10150 -1.0 -5.3 flagellar biosynthesis regulator FlhF compare
HSERO_RS00810 -1.0 -1.2 glutaredoxin compare
HSERO_RS21345 -1.0 -1.1 cell division inhibitor MinD compare
HSERO_RS01780 -1.0 -1.0 translation initiation factor IF-1 compare
HSERO_RS01915 -1.0 -3.1 membrane protein compare
HSERO_RS13885 -1.0 -7.4 histidine kinase compare
HSERO_RS15780 -1.0 -1.9 GntR family transcriptional regulator compare
HSERO_RS05855 -1.0 -4.3 flagellar motor protein MotA compare
HSERO_RS22935 -1.0 -3.0 metallothio multi-domain protein compare
HSERO_RS15575 -1.0 -0.7 uroporphyrin-III C-methyltransferase compare
HSERO_RS05860 -1.0 -1.6 biopolymer transporter ExbD compare
HSERO_RS13035 -1.0 -3.3 hypothetical protein compare
HSERO_RS05500 -1.0 -1.2 transaldolase compare
HSERO_RS02650 -1.0 -3.6 dihydroxy-acid dehydratase compare
HSERO_RS09220 -1.0 -1.4 hypothetical protein compare
HSERO_RS10215 -1.0 -3.5 flagellar P-ring protein FlgI compare
HSERO_RS19135 -1.0 -0.9 exodeoxyribonuclease compare
HSERO_RS08275 -1.0 -4.5 branched-chain amino acid transporter permease subunit LivH compare
HSERO_RS07755 -0.9 -1.9 glutamate racemase compare
HSERO_RS08340 -0.9 -2.6 AsnC family transcriptional regulator compare
HSERO_RS10805 -0.9 -1.1 succinyldiaminopimelate aminotransferase compare
HSERO_RS08270 -0.9 -3.6 amino acid ABC transporter substrate-binding protein compare


Specific Phenotypes

For 7 genes in this experiment