Experiment set12IT043 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Streptomycin sulfate salt 0.3 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS13805 -5.7 -3.0 hypothetical protein compare
BBR_RS11640 -4.7 -3.0 hypothetical protein compare
BBR_RS14275 -4.6 -1.5 30S ribosomal protein S1 compare
BBR_RS14210 -4.2 -2.9 hypothetical protein compare
BBR_RS11540 -4.0 -3.1 DUF1727 domain-containing protein compare
BBR_RS13830 -4.0 -1.3 DUF4191 domain-containing protein compare
BBR_RS12590 -3.9 -4.1 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS15785 -3.9 -3.2 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS20480 -3.8 -1.2 membrane protein compare
BBR_RS19270 -3.8 -1.2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS13040 -3.7 -2.6 CHAP domain-containing protein compare
BBR_RS13070 -3.7 -1.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS14140 -3.7 -2.5 Ppx/GppA family phosphatase compare
BBR_RS20435 -3.6 -1.2 CCA tRNA nucleotidyltransferase compare
BBR_RS13030 -3.6 -2.5 cell division ATP-binding protein FtsE compare
BBR_RS11185 -3.5 -3.4 type I DNA topoisomerase compare
BBR_RS18735 -3.5 -11.8 hypothetical protein compare
BBR_RS13840 -3.5 -4.9 DUF3043 domain-containing protein compare
BBR_RS16750 -3.5 -4.8 ParA family protein compare
BBR_RS18575 -3.5 -4.8 hypothetical protein compare
BBR_RS13780 -3.4 -8.3 ABC transporter permease compare
BBR_RS15180 -3.4 -8.9 long-chain fatty acid--CoA ligase compare
BBR_RS12545 -3.4 -3.3 DUF4012 domain-containing protein compare
BBR_RS12605 -3.3 -4.8 glycosyltransferase family 2 protein compare
BBR_RS19375 -3.3 -2.1 acyl-CoA carboxylase subunit beta compare
BBR_RS16220 -3.3 -1.0 DNA cytosine methyltransferase compare
BBR_RS18180 -3.2 -8.6 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS20850 -3.2 -1.0 resolvase compare
BBR_RS16610 -3.1 -5.1 hypothetical protein compare
BBR_RS13910 -3.0 -1.7 arginine repressor compare
BBR_RS17150 -3.0 -3.6 YggT family protein compare
BBR_RS20430 -3.0 -2.0 hypothetical protein compare
BBR_RS19160 -3.0 -1.3 phosphate ABC transporter permease subunit PstC compare
BBR_RS13125 -2.9 -1.1 ABC transporter permease compare
BBR_RS15090 -2.9 -1.3 type II 3-dehydroquinate dehydratase compare
BBR_RS13035 -2.9 -2.0 ABC transporter permease compare
BBR_RS10255 -2.8 -2.6 chromosomal replication initiator protein DnaA compare
BBR_RS11720 -2.7 -5.3 DUF2469 domain-containing protein compare
BBR_RS10900 -2.7 -2.7 molecular chaperone DnaK compare
BBR_RS20720 -2.7 -4.4 DUF4422 domain-containing protein compare
BBR_RS12235 -2.7 -1.2 hypothetical protein compare
BBR_RS19755 -2.7 -11.4 glycosyl transferase compare
BBR_RS14200 -2.7 -3.7 WhiB family transcriptional regulator compare
BBR_RS10665 -2.7 -20.0 DUF2156 domain-containing protein compare
BBR_RS17455 -2.6 -7.5 DNA-binding response regulator compare
BBR_RS16650 -2.5 -9.0 ABC transporter substrate-binding protein compare
BBR_RS20465 -2.5 -6.9 chromosome partitioning protein compare
BBR_RS19355 -2.5 -1.3 tRNA-Gly compare
BBR_RS14205 -2.5 -4.1 hypothetical protein compare
BBR_RS11505 -2.4 -12.4 TetR/AcrR family transcriptional regulator compare
BBR_RS14715 -2.3 -1.8 XRE family transcriptional regulator compare
BBR_RS10620 -2.3 -4.3 phosphoprotein phosphatase compare
BBR_RS20840 -2.3 -2.3 hypothetical protein compare
BBR_RS10720 -2.2 -12.1 PDZ domain-containing protein compare
BBR_RS16430 -2.2 -2.8 nucleotide pyrophosphatase compare
BBR_RS10445 -2.2 -12.0 HlyC/CorC family transporter compare
BBR_RS14190 -2.2 -5.5 transcriptional regulator compare
BBR_RS14610 -2.2 -2.8 DNA-binding response regulator compare
BBR_RS19945 -2.1 -6.1 MarR family transcriptional regulator compare
BBR_RS14290 -2.1 -4.1 TerC family protein compare
BBR_RS13750 -2.1 -2.1 DivIVA domain-containing protein compare
BBR_RS10715 -2.1 -13.1 tRNA-guanine(34) transglycosylase compare
BBR_RS12370 -2.1 -0.9 cell division protein compare
BBR_RS17640 -2.1 -1.7 DNA-directed RNA polymerase subunit omega compare
BBR_RS14265 -2.1 -4.0 Solute-binding protein of ABC transporter system for metals compare
BBR_RS15880 -2.1 -1.9 hypothetical protein compare
BBR_RS14260 -2.0 -1.1 ABC transporter ATP-binding protein compare
BBR_RS16820 -2.0 -2.1 RNA polymerase sigma factor RpoE compare
BBR_RS16845 -2.0 -1.6 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS10580 -2.0 -1.4 septation inhibitor protein compare
BBR_RS14100 -2.0 -10.1 UPF0182 family protein compare
BBR_RS17155 -1.9 -0.8 cell division protein SepF compare
BBR_RS20370 -1.9 -9.8 hypothetical protein compare
BBR_RS14240 -1.8 -5.3 1,4-alpha-glucan branching protein GlgB compare
BBR_RS12460 -1.8 -7.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS16585 -1.8 -5.5 BAX inhibitor (BI)-1/YccA family protein compare
BBR_RS16950 -1.8 -1.6 hypothetical protein compare
BBR_RS18160 -1.8 -4.6 DUF3180 domain-containing protein compare
BBR_RS14985 -1.7 -2.1 ATP-dependent DNA helicase PcrA compare
BBR_RS19820 -1.7 -9.5 ATP-binding protein of ABC transporter system compare
BBR_RS19815 -1.7 -10.5 ABC transporter permease compare
BBR_RS21170 -1.7 -5.2 membrane protein insertion efficiency factor YidD compare
BBR_RS12295 -1.7 -0.7 RNA-binding protein compare
BBR_RS19760 -1.7 -1.7 polysaccharide ABC transporter ATPase compare
BBR_RS18050 -1.7 -2.0 threonylcarbamoyl-AMP synthase compare
BBR_RS15760 -1.7 -2.4 MerR family transcriptional regulator compare
BBR_RS16425 -1.6 -2.1 DUF3071 domain-containing protein compare
BBR_RS19095 -1.6 -9.9 magnesium transporter compare
BBR_RS15085 -1.6 -1.2 3-dehydroquinate synthase compare
BBR_RS19395 -1.6 -1.3 hypothetical protein compare
BBR_RS16625 -1.6 -3.5 DUF3710 domain-containing protein compare
BBR_RS16140 -1.6 -5.4 long-chain fatty acid--CoA ligase compare
BBR_RS16080 -1.6 -1.8 DUF1287 domain-containing protein compare
BBR_RS16175 -1.6 -2.0 DNA integration/recombination/inversion protein compare
BBR_RS14605 -1.5 -8.0 ABC transporter permease compare
BBR_RS14780 -1.5 -3.2 XRE family transcriptional regulator compare
BBR_RS13785 -1.5 -4.6 myristoyl transferase compare
BBR_RS16985 -1.5 -2.3 transcriptional repressor LexA compare
BBR_RS15520 -1.5 -3.0 shikimate 5-dehydrogenase compare
BBR_RS15050 -1.5 -2.2 DUF948 domain-containing protein compare
BBR_RS15655 -1.5 -2.8 Holliday junction branch migration protein RuvA compare
BBR_RS16675 -1.5 -2.6 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS16540 -1.5 -2.7 XRE family transcriptional regulator compare
BBR_RS20745 -1.4 -0.9 hypothetical protein compare
BBR_RS19795 -1.4 -8.6 hypothetical protein compare
BBR_RS20555 -1.4 -1.1 hypothetical protein compare
BBR_RS11145 -1.4 -1.6 hypothetical protein compare
BBR_RS16640 -1.4 -1.6 ABC transporter permease compare
BBR_RS14600 -1.4 -4.4 ABC transporter ATP-binding protein compare
BBR_RS15915 -1.4 -0.8 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS10555 -1.4 -1.0 DUF3073 domain-containing protein compare
BBR_RS19905 -1.4 -0.6 methionine--tRNA ligase compare
BBR_RS12810 -1.4 -4.9 hypothetical protein compare
BBR_RS13730 -1.3 -5.3 hypothetical protein compare
BBR_RS20450 -1.3 -8.7 murein biosynthesis integral membrane protein MurJ compare
BBR_RS19695 -1.3 -7.6 tRNA glutamyl-Q(34) synthetase GluQRS compare
BBR_RS13005 -1.3 -7.2 aminopeptidase N compare
BBR_RS20705 -1.3 -1.3 hypothetical protein compare
BBR_RS15170 -1.3 -4.9 HlyC/CorC family transporter compare
BBR_RS19370 -1.3 -3.0 type I polyketide synthase compare
BBR_RS19540 -1.3 -2.0 homoserine dehydrogenase compare
BBR_RS12325 -1.3 -4.3 type 1 glutamine amidotransferase compare
BBR_RS15665 -1.3 -2.8 preprotein translocase subunit YajC compare
BBR_RS15555 -1.2 -1.9 HAD family hydrolase compare
BBR_RS21015 -1.2 -1.1 hypothetical protein compare
BBR_RS20730 -1.2 -1.8 Crp/Fnr family transcriptional regulator compare
BBR_RS19155 -1.2 -3.7 phosphate ABC transporter, permease protein PstA compare
BBR_RS17775 -1.2 -2.6 LacI family DNA-binding transcriptional regulator compare
BBR_RS20775 -1.2 -1.3 DUF4230 domain-containing protein compare
BBR_RS12940 -1.2 -3.5 hypothetical protein compare
BBR_RS15895 -1.2 -2.4 hypothetical protein compare
BBR_RS10640 -1.2 -7.3 alpha/beta hydrolase compare
BBR_RS11805 -1.2 -3.6 hypothetical protein compare
BBR_RS16940 -1.2 -1.5 hypothetical protein compare
BBR_RS16135 -1.2 -1.6 peptide deformylase compare
BBR_RS10940 -1.2 -4.8 DedA family protein compare
BBR_RS19100 -1.2 -6.8 N-acetyltransferase compare
BBR_RS20400 -1.2 -8.4 serine/threonine protein kinase compare
BBR_RS19165 -1.1 -1.6 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS17680 -1.1 -1.1 hypothetical protein compare
BBR_RS10905 -1.1 -2.4 nucleotide exchange factor GrpE compare
BBR_RS11645 -1.1 -3.9 integrase compare
BBR_RS19655 -1.1 -6.0 hypothetical protein compare
BBR_RS17850 -1.1 -5.9 LacI family DNA-binding transcriptional regulator compare
BBR_RS14625 -1.1 -3.9 pyrroline-5-carboxylate reductase compare
BBR_RS15155 -1.1 -2.2 histidine triad nucleotide-binding protein compare
BBR_RS11340 -1.1 -4.2 TetR/AcrR family transcriptional regulator compare
BBR_RS14640 -1.1 -2.5 amino acid ABC transporter permease compare
BBR_RS14370 -1.1 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS14230 -1.1 -2.7 HAMP domain-containing histidine kinase compare
BBR_RS15750 -1.1 -0.7 hypothetical protein compare
BBR_RS15450 -1.1 -1.8 dihydroorotate dehydrogenase compare
BBR_RS17660 -1.1 -1.7 hypothetical protein compare
BBR_RS17555 -1.1 -1.7 ubiquitin-like protein Pup compare
BBR_RS13490 -1.1 -0.7 30S ribosomal protein S7 compare
BBR_RS14080 -1.0 -1.0 hypothetical protein compare
BBR_RS19190 -1.0 -3.9 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS16275 -1.0 -0.7 leucine--tRNA ligase compare
BBR_RS11770 -1.0 -2.3 chorismate mutase compare
BBR_RS13850 -1.0 -2.3 ABC transporter permease compare
BBR_RS15395 -1.0 -4.0 tRNA (adenine-N1)-methyltransferase compare
BBR_RS19465 -1.0 -1.8 ribonuclease E/G compare
BBR_RS12365 -1.0 -3.3 DUF177 domain-containing protein compare
BBR_RS20440 -1.0 -3.0 NUDIX hydrolase compare
BBR_RS15445 -1.0 -2.7 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS12245 -1.0 -0.9 polyribonucleotide nucleotidyltransferase compare
BBR_RS17650 -1.0 -1.4 cell filamentation protein Fic compare
BBR_RS16905 -0.9 -2.5 hypothetical protein compare
BBR_RS12980 -0.9 -5.8 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS16600 -0.9 -4.2 aconitate hydratase AcnA compare
BBR_RS20970 -0.9 -2.5 integrase compare
BBR_RS14215 -0.9 -1.8 peptidase compare
BBR_RS20870 -0.9 -1.2 hypothetical protein compare
BBR_RS16965 -0.9 -1.4 ATP-dependent DNA helicase compare
BBR_RS16655 -0.9 -2.3 tyrosine recombinase XerC compare
BBR_RS16040 -0.9 -1.6 hypothetical protein compare
BBR_RS15790 -0.9 -3.3 ATP phosphoribosyltransferase compare
BBR_RS11970 -0.9 -1.0 Phage transcriptional regulator compare
BBR_RS12470 -0.9 -4.7 long-chain fatty acid--CoA ligase compare
BBR_RS19650 -0.9 -5.9 NUDIX hydrolase compare
BBR_RS10310 -0.9 -6.5 NADP-specific glutamate dehydrogenase compare
BBR_RS13820 -0.9 -0.6 ATP-binding protein compare
BBR_RS12750 -0.9 -1.6 hypothetical protein compare
BBR_RS15685 -0.9 -4.5 hypothetical protein compare
BBR_RS19120 -0.9 -2.3 helicase compare
BBR_RS14360 -0.9 -2.7 hypothetical protein compare
BBR_RS14490 -0.9 -2.9 ribonuclease D compare
BBR_RS20815 -0.9 -1.7 potassium transporter Trk compare
BBR_RS13880 -0.9 -3.0 hypothetical protein compare
BBR_RS12785 -0.9 -1.6 transcriptional regulator compare
BBR_RS21000 -0.9 -1.2 hypothetical protein compare
BBR_RS10575 -0.8 -5.4 rhomboid family intramembrane serine protease compare
BBR_RS16630 -0.8 -2.3 exodeoxyribonuclease III compare
BBR_RS12310 -0.8 -0.8 signal recognition particle protein compare
BBR_RS14280 -0.8 -1.1 dephospho-CoA kinase compare
BBR_RS18185 -0.8 -2.0 hypoxanthine phosphoribosyltransferase compare
BBR_RS16615 -0.8 -2.8 class I SAM-dependent RNA methyltransferase compare
BBR_RS21155 -0.8 -3.1 hypothetical protein compare
BBR_RS20680 -0.8 -2.7 hypothetical protein compare
BBR_RS18220 -0.8 -3.4 glycosyltransferase family 2 protein compare


Specific Phenotypes

For 21 genes in this experiment

For stress Streptomycin sulfate salt in Bifidobacterium breve UCC2003

For stress Streptomycin sulfate salt across organisms