Experiment set12IT042 for Herbaspirillum seropedicae SmR1

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
HSERO_RS17155 -6.3 -3.1 RNA helicase compare
HSERO_RS18990 -5.7 -3.9 pyrroline-5-carboxylate reductase compare
HSERO_RS21035 -5.5 -2.7 hypothetical protein compare
HSERO_RS20310 -4.9 -3.6 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS13960 -4.6 -3.9 hypothetical protein compare
HSERO_RS08115 -4.4 -1.3 acyl-CoA-binding protein compare
HSERO_RS20820 -4.2 -1.2 ABC transporter ATP-binding protein compare
HSERO_RS21025 -4.2 -4.8 hypothetical protein compare
HSERO_RS08790 -4.1 -1.2 hypothetical protein compare
HSERO_RS20985 -4.1 -1.2 serine acetyltransferase compare
HSERO_RS03450 -4.1 -1.7 energy transducer protein TonB compare
HSERO_RS21005 -3.9 -6.8 asparagine synthase compare
HSERO_RS17980 -3.8 -2.1 GTP-binding protein compare
HSERO_RS23945 -3.7 -2.4 cobyric acid synthase CobQ compare
HSERO_RS23185 -3.7 -1.1 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS10460 -3.7 -1.5 homoserine dehydrogenase compare
HSERO_RS03235 -3.6 -1.5 hypothetical protein compare
HSERO_RS16070 -3.5 -1.7 cytochrome biogenesis protein compare
HSERO_RS15070 -3.4 -1.0 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS21010 -3.3 -6.1 LPS biosynthesis protein compare
HSERO_RS02330 -3.3 -5.4 aspartate carbamoyltransferase compare
HSERO_RS15630 -3.3 -1.0 exodeoxyribonuclease III compare
HSERO_RS20315 -3.0 -3.2 imidazole glycerol phosphate synthase compare
HSERO_RS03285 -3.0 -1.2 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS20615 -3.0 -2.1 phenylacetate-CoA oxygenase subunit PaaB compare
HSERO_RS20625 -2.9 -1.1 phenylacetate-CoA oxygenase compare
HSERO_RS20320 -2.9 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS16475 -2.8 -1.6 tryptophan synthase subunit alpha compare
HSERO_RS18045 -2.8 -1.1 hypothetical protein compare
HSERO_RS09050 -2.7 -2.2 2-aminoadipate aminotransferase compare
HSERO_RS20630 -2.7 -1.8 phenylacetic acid degradation protein compare
HSERO_RS17110 -2.7 -1.7 ribonuclease H compare
HSERO_RS17900 -2.6 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS16035 -2.6 -2.3 cytochrome C oxidase compare
HSERO_RS01815 -2.6 -4.1 gamma-glutamyl kinase compare
HSERO_RS20325 -2.5 -4.5 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS21000 -2.5 -4.0 aminotransferase DegT compare
HSERO_RS19265 -2.5 -0.9 LysR family transcriptional regulator compare
HSERO_RS13280 -2.5 -2.1 precorrin-4 C11-methyltransferase compare
HSERO_RS20970 -2.4 -7.0 NDP-N-acetyl-D-mannosaminuronate dehydrogenase compare
HSERO_RS17530 -2.4 -2.9 RpiR family transcriptional regulator compare
HSERO_RS10395 -2.4 -1.9 phosphate transport regulator compare
HSERO_RS10405 -2.4 -1.8 phosphate starvation protein PhoH compare
HSERO_RS20350 -2.4 -3.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS20265 -2.3 -1.4 hypothetical protein compare
HSERO_RS21060 -2.3 -5.2 hypothetical protein compare
HSERO_RS20345 -2.3 -3.4 histidinol dehydrogenase compare
HSERO_RS07970 -2.2 -1.7 formyltetrahydrofolate deformylase compare
HSERO_RS09215 -2.2 -4.5 D-aminopeptidase compare
HSERO_RS14640 -2.2 -5.5 peptide chain release factor 3 compare
HSERO_RS08640 -2.2 -1.3 hypothetical protein compare
HSERO_RS21065 -2.2 -6.7 hypothetical protein compare
HSERO_RS15835 -2.2 -1.2 aspartate aminotransferase compare
HSERO_RS19590 -2.2 -0.9 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS03520 -2.1 -2.5 aminoglycoside phosphotransferase compare
HSERO_RS23475 -2.1 -4.0 hydroxymethylglutaryl-CoA lyase compare
HSERO_RS08515 -2.1 -1.8 diguanylate cyclase compare
HSERO_RS04135 -2.1 -1.1 amidohydrolase compare
HSERO_RS20990 -2.0 -3.1 aminotransferase DegT compare
HSERO_RS06145 -2.0 -1.4 NrdR family transcriptional regulator compare
HSERO_RS19450 -2.0 -3.2 indole-3-glycerol-phosphate synthase compare
HSERO_RS03085 -2.0 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS20330 -2.0 -4.5 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS01825 -1.9 -1.6 RNA pyrophosphohydrolase compare
HSERO_RS19885 -1.9 -2.7 AsnC family transcriptional regulator compare
HSERO_RS20980 -1.9 -4.1 oxidoreductase compare
HSERO_RS16045 -1.9 -1.2 cytochrome oxidase compare
HSERO_RS19525 -1.9 -2.3 PTS sugar transporter subunit IIA compare
HSERO_RS11830 -1.9 -1.3 hypothetical protein compare
HSERO_RS05540 -1.9 -1.4 cytochrome C' compare
HSERO_RS17105 -1.8 -1.4 DNA polymerase III subunit epsilon compare
HSERO_RS06935 -1.8 -1.6 RNA-binding protein compare
HSERO_RS08105 -1.8 -2.8 sodium:proton antiporter compare
HSERO_RS10125 -1.8 -2.9 chemotaxis protein compare
HSERO_RS04325 -1.7 -2.7 helicase I compare
HSERO_RS00080 -1.7 -6.0 histidine kinase compare
HSERO_RS01870 -1.7 -3.3 ABC transporter permease compare
HSERO_RS02735 -1.7 -0.8 hypothetical protein compare
HSERO_RS09160 -1.6 -2.9 amidase compare
HSERO_RS18685 -1.6 -1.0 hypothetical protein compare
HSERO_RS08650 -1.6 -5.1 acetolactate synthase compare
HSERO_RS18455 -1.6 -1.3 phosphoglycolate phosphatase compare
HSERO_RS06420 -1.6 -1.2 hypothetical protein compare
HSERO_RS07910 -1.6 -2.2 alkylhydroperoxidase compare
HSERO_RS08035 -1.6 -2.2 GCN5 family N-acetyltransferase compare
HSERO_RS19515 -1.5 -1.3 7-cyano-7-deazaguanine reductase compare
HSERO_RS01320 -1.5 -2.1 RND transporter MFP subunit compare
HSERO_RS14185 -1.5 -1.2 FeS cluster assembly scaffold IscU compare
HSERO_RS08335 -1.5 -1.9 4-hydroxyphenylpyruvate dioxygenase compare
HSERO_RS01505 -1.5 -1.2 transketolase compare
HSERO_RS08770 -1.5 -3.9 membrane protein compare
HSERO_RS04265 -1.5 -0.9 tyrosine recombinase XerD compare
HSERO_RS10805 -1.4 -1.3 succinyldiaminopimelate aminotransferase compare
HSERO_RS21530 -1.4 -3.0 cytochrome C550 compare
HSERO_RS21040 -1.4 -1.6 3-oxoacyl-ACP synthase compare
HSERO_RS14955 -1.4 -4.1 chemotaxis protein compare
HSERO_RS07300 -1.4 -2.5 glutamate--cysteine ligase compare
HSERO_RS21100 -1.4 -3.8 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS02785 -1.4 -1.5 hypothetical protein compare
HSERO_RS11590 -1.4 -1.7 hypothetical protein compare
HSERO_RS13265 -1.4 -1.8 G3E family GTPase compare
HSERO_RS06175 -1.4 -2.6 queuine tRNA-ribosyltransferase compare
HSERO_RS17815 -1.4 -0.8 glycosyl transferase compare
HSERO_RS20240 -1.4 -0.7 cytochrome B compare
HSERO_RS08280 -1.3 -3.7 leucine/isoleucine/valine transporter permease subunit compare
HSERO_RS15665 -1.3 -0.6 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS08290 -1.3 -2.3 leucine/isoleucine/valine transporter ATP-binding subunit compare
HSERO_RS03510 -1.3 -2.1 proline aminopeptidase P II compare
HSERO_RS18010 -1.3 -0.5 pseudouridine synthase compare
HSERO_RS22285 -1.3 -1.5 GntR family transcriptional regulator compare
HSERO_RS04330 -1.3 -3.4 ATP-dependent exonuclease compare
HSERO_RS13560 -1.3 -3.0 transcriptional regulator compare
HSERO_RS14930 -1.3 -1.5 aldolase compare
HSERO_RS15655 -1.3 -0.8 methylcitrate synthase compare
HSERO_RS02650 -1.3 -3.6 dihydroxy-acid dehydratase compare
HSERO_RS18015 -1.3 -2.5 transcriptional regulator compare
HSERO_RS05705 -1.3 -1.9 endoribonuclease L-PSP compare
HSERO_RS10455 -1.3 -3.6 aminotransferase compare
HSERO_RS01325 -1.3 -2.4 cation/multidrug efflux protein compare
HSERO_RS22175 -1.3 -0.8 hypothetical protein compare
HSERO_RS13255 -1.2 -1.6 cobyrinic acid a,c-diamide synthase compare
HSERO_RS10400 -1.2 -4.5 inorganic phosphate transporter compare
HSERO_RS02915 -1.2 -2.0 short-chain dehydrogenase compare
HSERO_RS17985 -1.2 -2.3 tRNA pseudouridine synthase B compare
HSERO_RS20885 -1.2 -2.4 beta-lactamase compare
HSERO_RS02350 -1.2 -3.1 diadenosine tetraphosphatase compare
HSERO_RS23655 -1.2 -1.1 phosphonate ABC transporter permease compare
HSERO_RS16065 -1.2 -2.7 cation transporter compare
HSERO_RS21450 -1.2 -1.4 lipid A biosynthesis acyltransferase compare
HSERO_RS12360 -1.2 -1.5 hypothetical protein compare
HSERO_RS14475 -1.2 -3.0 iron ABC transporter ATP-binding protein compare
HSERO_RS12630 -1.2 -1.9 chemotaxis protein CheY compare
HSERO_RS01455 -1.2 -1.0 hypothetical protein compare
HSERO_RS02015 -1.2 -1.9 peptidase M23 compare
HSERO_RS20830 -1.2 -2.3 ABC transporter substrate-binding protein compare
HSERO_RS21340 -1.2 -1.9 septum formation inhibitor protein compare
HSERO_RS14950 -1.2 -1.4 purine-binding chemotaxis protein compare
HSERO_RS21080 -1.2 -3.4 glycosyl transferase compare
HSERO_RS03995 -1.2 -1.2 hypothetical protein compare
HSERO_RS08530 -1.2 -2.7 glycine/betaine ABC transporter permease compare
HSERO_RS16835 -1.1 -2.5 phosphatidylglycerophosphatase compare
HSERO_RS06760 -1.1 -1.8 hypothetical protein compare
HSERO_RS03445 -1.1 -4.1 biopolymer transport transmembrane protein compare
HSERO_RS09720 -1.1 -2.9 membrane protein compare
HSERO_RS14000 -1.1 -1.9 hypothetical protein compare
HSERO_RS09290 -1.1 -2.2 ribonuclease R compare
HSERO_RS00435 -1.1 -1.8 glutathione synthetase compare
HSERO_RS06355 -1.1 -2.3 2,4-diketo-3-deoxy-L-fuconate hydrolase (EC 3.7.1.26) (from data) compare
HSERO_RS23155 -1.1 -1.4 AraC family transcriptional regulator compare
HSERO_RS21990 -1.1 -1.0 hypothetical protein compare
HSERO_RS15990 -1.1 -3.1 MarR family transcriptional regulator compare
HSERO_RS05515 -1.1 -0.3 glucose-6-phosphate isomerase compare
HSERO_RS05140 -1.1 -1.8 MarR family transcriptional regulator compare
HSERO_RS02260 -1.1 -1.5 DNA polymerase I compare
HSERO_RS02215 -1.1 -0.3 D-arabinitol 4-dehydrogenase compare
HSERO_RS04150 -1.1 -0.9 hypothetical protein compare
HSERO_RS21540 -1.1 -1.4 alkyl hydroperoxide reductase subunit C compare
HSERO_RS09220 -1.0 -1.8 hypothetical protein compare
HSERO_RS21055 -1.0 -1.2 hypothetical protein compare
HSERO_RS12945 -1.0 -1.6 hypothetical protein compare
HSERO_RS22965 -1.0 -1.5 activator of HSP90 ATPase compare
HSERO_RS20975 -1.0 -2.8 UDP-galactose-4-epimerase compare
HSERO_RS16040 -1.0 -1.2 cytochrome CBB3 compare
HSERO_RS04535 -1.0 -2.8 tail protein X compare
HSERO_RS08775 -1.0 -0.9 membrane protein compare
HSERO_RS04120 -1.0 -1.5 hypothetical protein compare
HSERO_RS05970 -1.0 -0.9 ABC transporter compare
HSERO_RS16050 -1.0 -0.8 peptidase S41 compare
HSERO_RS17635 -1.0 -2.2 RNA polymerase sigma-70 factor compare
HSERO_RS15600 -1.0 -3.1 cytosol aminopeptidase compare
HSERO_RS20835 -1.0 -2.2 ABC transporter substrate-binding protein compare
HSERO_RS12955 -1.0 -2.3 short-chain dehydrogenase compare
HSERO_RS14175 -1.0 -1.4 lactoylglutathione lyase compare
HSERO_RS12210 -1.0 -4.1 GntR family transcriptional regulator compare
HSERO_RS03875 -1.0 -0.7 hypothetical protein compare
HSERO_RS00215 -1.0 -1.4 hypothetical protein compare
HSERO_RS10035 -1.0 -2.0 hypothetical protein compare
HSERO_RS18360 -1.0 -1.6 hypothetical protein compare
HSERO_RS07410 -1.0 -2.0 LysR family transcriptional regulator compare
HSERO_RS03295 -1.0 -1.9 type IV pilin compare
HSERO_RS13230 -1.0 -0.9 cobyric acid synthase compare
HSERO_RS05640 -1.0 -3.6 N-acetyltransferase GCN5 compare
HSERO_RS05740 -1.0 -1.7 transcriptional regulator compare
HSERO_RS22065 -1.0 -1.1 EpiA compare
HSERO_RS20355 -0.9 -2.0 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS15585 -0.9 -3.3 cobalamin biosynthesis protein CbiX compare
HSERO_RS03780 -0.9 -1.6 type VI secretion protein compare
HSERO_RS05440 -0.9 -0.7 hypothetical protein compare
HSERO_RS07035 -0.9 -1.8 peptidase M48 compare
HSERO_RS11995 -0.9 -2.0 universal stress protein compare
HSERO_RS05225 -0.9 -2.2 L-arabinolactonase (EC 3.1.1.15) (from data) compare
HSERO_RS06785 -0.9 -2.2 metal-dependent hydrolase compare
HSERO_RS13150 -0.9 -1.6 hypothetical protein compare
HSERO_RS17710 -0.9 -2.3 response regulator compare
HSERO_RS20640 -0.9 -2.9 enoyl-CoA hydratase compare
HSERO_RS08660 -0.9 -2.1 ketol-acid reductoisomerase compare
HSERO_RS11155 -0.9 -2.1 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS10010 -0.9 -1.4 UDP-glucose 6-dehydrogenase compare
HSERO_RS16840 -0.9 -2.2 competence damage-inducible protein A compare
HSERO_RS19815 -0.9 -2.2 phytanoyl-CoA dioxygenase compare


Specific Phenotypes

For 1 genes in this experiment