Experiment set12IT042 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Suberic acid 5.7 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS12370 +1.6 3.9 cell division protein compare
BBR_RS13750 +1.6 3.9 DivIVA domain-containing protein compare
BBR_RS16950 +1.4 3.4 hypothetical protein compare
BBR_RS11720 +1.3 4.5 DUF2469 domain-containing protein compare
BBR_RS16905 +1.2 6.2 hypothetical protein compare
BBR_RS13215 +1.2 4.1 hypothetical protein compare
BBR_RS10285 +1.2 1.9 membrane protein compare
BBR_RS16845 +1.1 1.0 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS20690 +1.0 3.5 hypothetical protein compare
BBR_RS12500 +1.0 1.6 sugar ABC transporter permease compare
BBR_RS10615 +0.9 6.1 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS16020 +0.9 2.9 hypothetical protein compare
BBR_RS15460 +0.9 3.4 hypothetical protein compare
BBR_RS13910 +0.8 1.2 arginine repressor compare
BBR_RS18170 +0.8 1.8 dihydropteroate synthase compare
BBR_RS16955 +0.8 2.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS15755 +0.8 0.8 hypothetical protein compare
BBR_RS14130 +0.7 1.2 septum formation initiator family protein compare
BBR_RS12045 +0.7 3.6 hypothetical protein compare
BBR_RS16245 +0.7 1.6 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS20695 +0.7 2.3 hypothetical protein compare
BBR_RS16960 +0.7 2.0 transcriptional regulator MraZ compare
BBR_RS15855 +0.7 2.8 N-acetyltransferase compare
BBR_RS14215 +0.7 2.1 peptidase compare
BBR_RS20870 +0.6 2.1 hypothetical protein compare
BBR_RS18525 +0.6 2.0 hypothetical protein compare
BBR_RS16080 +0.6 1.5 DUF1287 domain-containing protein compare
BBR_RS15015 +0.6 2.7 cytidine deaminase compare
BBR_RS16010 +0.6 1.9 hypothetical protein compare
BBR_RS19095 +0.6 4.7 magnesium transporter compare
BBR_RS15845 +0.6 0.9 hypothetical protein compare
BBR_RS13070 +0.6 0.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS20930 +0.6 1.2 hypothetical protein compare
BBR_RS15320 +0.5 2.2 hypothetical protein compare
BBR_RS14585 +0.5 1.4 hypothetical protein compare
BBR_RS15970 +0.5 2.6 hypothetical protein compare
BBR_RS15715 +0.5 2.9 Cof-type HAD-IIB family hydrolase compare
BBR_RS21040 +0.5 2.0 transcription factor WhiB compare
BBR_RS20750 +0.5 1.1 GntR family transcriptional regulator compare
BBR_RS11950 +0.5 1.7 tRNA-Tyr compare
BBR_RS11675 +0.5 0.6 hypothetical protein compare
BBR_RS20885 +0.5 0.5 hypothetical protein compare
BBR_RS20800 +0.5 0.9 hypothetical protein compare
BBR_RS11970 +0.5 1.4 Phage transcriptional regulator compare
BBR_RS14920 +0.4 2.6 ABC transporter permease compare
BBR_RS21100 +0.4 1.5 hypothetical protein compare
BBR_RS16255 +0.4 0.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS13335 +0.4 2.2 transcriptional repressor compare
BBR_RS12550 +0.4 3.6 sugar transferase compare
BBR_RS20765 +0.4 2.6 50S ribosomal protein L31 compare
BBR_RS12620 +0.4 2.9 glycosyltransferase family 1 protein compare
BBR_RS17880 +0.4 1.4 nucleotidyltransferase compare
BBR_RS19905 +0.4 0.6 methionine--tRNA ligase compare
BBR_RS20980 +0.4 0.3 hypothetical protein compare
BBR_RS15075 +0.4 2.1 peptidase A24 compare
BBR_RS15835 +0.4 2.1 MFS transporter compare
BBR_RS15670 +0.4 1.0 adenine phosphoribosyltransferase compare
BBR_RS20915 +0.4 1.9 hypothetical protein compare
BBR_RS17275 +0.4 2.4 nitroreductase compare
BBR_RS20710 +0.4 1.8 hypothetical protein compare
BBR_RS14915 +0.4 1.9 ABC transporter ATP-binding protein compare
BBR_RS16685 +0.4 1.1 alcohol dehydrogenase compare
BBR_RS13390 +0.4 1.7 hypothetical protein compare
BBR_RS14970 +0.4 1.3 transcriptional regulator compare
BBR_RS12295 +0.4 0.5 RNA-binding protein compare
BBR_RS15030 +0.3 1.3 mRNA interferase PemK compare
BBR_RS14960 +0.3 1.6 alpha/beta hydrolase compare
BBR_RS16300 +0.3 1.7 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS12055 +0.3 2.6 thioredoxin compare
BBR_RS13220 +0.3 1.5 hypothetical protein compare
BBR_RS12125 +0.3 2.2 transposase compare
BBR_RS11540 +0.3 1.2 DUF1727 domain-containing protein compare
BBR_RS19520 +0.3 1.0 DUF1778 domain-containing protein compare
BBR_RS18990 +0.3 0.6 AbrB family transcriptional regulator compare
BBR_RS13935 +0.3 1.5 hypothetical protein compare
BBR_RS14910 +0.3 2.0 E1-E2 ATPase compare
BBR_RS20080 +0.3 2.8 ABC transporter substrate-binding protein compare
BBR_RS20810 +0.3 0.9 pirin compare
BBR_RS11975 +0.3 1.4 hypothetical protein compare
BBR_RS20740 +0.3 1.5 hypothetical protein compare
BBR_RS14750 +0.3 1.9 serine/threonine protein kinase compare
BBR_RS11825 +0.3 2.2 glycoside hydrolase compare
BBR_RS14865 +0.3 1.8 haloacid dehalogenase-like hydrolase compare
BBR_RS14475 +0.3 1.9 formate C-acetyltransferase compare
BBR_RS18100 +0.3 2.2 lincomycin resistance protein LmrB compare
BBR_RS12175 +0.3 1.9 TetR/AcrR family transcriptional regulator compare
BBR_RS15565 +0.3 1.6 hypothetical protein compare
BBR_RS14800 +0.3 1.7 glucosamine-6-phosphate deaminase compare
BBR_RS12490 +0.3 1.3 hypothetical protein compare
BBR_RS13320 +0.3 1.3 ABC transporter ATP-binding protein compare
BBR_RS17585 +0.3 1.4 PTS fructose transporter subunit IIA compare
BBR_RS20555 +0.3 0.8 hypothetical protein compare
BBR_RS15380 +0.3 1.5 thiaminase II compare
BBR_RS15500 +0.3 1.2 cobalt ABC transporter permease compare
BBR_RS14275 +0.3 0.5 30S ribosomal protein S1 compare
BBR_RS15905 +0.3 1.6 ABC transporter ATP-binding protein compare
BBR_RS14480 +0.3 1.7 pyruvate formate-lyase 1-activating enzyme compare
BBR_RS17040 +0.3 1.3 hypothetical protein compare
BBR_RS15485 +0.3 1.2 ABC transporter ATP-binding protein compare
BBR_RS14895 +0.3 1.4 DUF47 domain-containing protein compare
BBR_RS17270 +0.3 1.8 ROK family protein compare
BBR_RS12940 +0.3 1.8 hypothetical protein compare
BBR_RS20665 +0.3 0.8 hypothetical protein compare
BBR_RS17960 +0.3 1.7 Ppx/GppA family phosphatase compare
BBR_RS15880 +0.3 0.6 hypothetical protein compare
BBR_RS13175 +0.3 1.4 deoxyguanosinetriphosphate triphosphohydrolase compare
BBR_RS20415 +0.3 2.0 G5 domain-containing protein compare
BBR_RS11255 +0.2 2.0 hypothetical protein compare
BBR_RS14320 +0.2 1.4 Nif3-like dinuclear metal center hexameric protein compare
BBR_RS16560 +0.2 1.2 hypothetical protein compare
BBR_RS20790 +0.2 0.7 hypothetical protein compare
BBR_RS14980 +0.2 1.1 xanthine phosphoribosyltransferase compare
BBR_RS18005 +0.2 1.4 hypothetical protein compare
BBR_RS14420 +0.2 0.9 ribosome silencing factor compare
BBR_RS14535 +0.2 1.1 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS14900 +0.2 0.7 DNA-binding response regulator compare
BBR_RS20965 +0.2 1.2 MFS transporter compare
BBR_RS20855 +0.2 0.8 hypothetical protein compare
BBR_RS17080 +0.2 1.4 hypothetical protein compare
BBR_RS20825 +0.2 0.4 hypothetical protein compare
BBR_RS21060 +0.2 0.9 hypothetical protein compare
BBR_RS19105 +0.2 1.2 FmdB family transcriptional regulator compare
BBR_RS14400 +0.2 1.9 acetyltransferase compare
BBR_RS15135 +0.2 1.4 glucose-1-phosphate adenylyltransferase compare
BBR_RS13280 +0.2 1.2 ABC transporter permease compare
BBR_RS16275 +0.2 0.4 leucine--tRNA ligase compare
BBR_RS17930 +0.2 1.5 flavodoxin family protein compare
BBR_RS16005 +0.2 1.4 ABC transporter compare
BBR_RS21000 +0.2 0.7 hypothetical protein compare
BBR_RS13860 +0.2 1.5 energy-coupling factor transporter transmembrane protein EcfT compare
BBR_RS15590 +0.2 1.5 molecular chaperone DnaJ compare
BBR_RS12340 +0.2 0.9 Arc family DNA-binding protein compare
BBR_RS21030 +0.2 0.8 hypothetical protein compare
BBR_RS18220 +0.2 1.4 glycosyltransferase family 2 protein compare
BBR_RS14840 +0.2 0.9 IS3 family transposase compare
BBR_RS18395 +0.2 1.3 hypothetical protein compare
BBR_RS16325 +0.2 1.3 AGE family epimerase/isomerase compare
BBR_RS14860 +0.2 1.4 MFS transporter compare
BBR_RS17660 +0.2 0.7 hypothetical protein compare
BBR_RS12245 +0.2 0.4 polyribonucleotide nucleotidyltransferase compare
BBR_RS19600 +0.2 1.6 hypothetical protein compare
BBR_RS17600 +0.2 1.1 HAD family phosphatase compare
BBR_RS13655 +0.2 1.3 hypothetical protein compare
BBR_RS15215 +0.2 1.2 MazG-like protein compare
BBR_RS17055 +0.2 1.5 histidinol dehydrogenase compare
BBR_RS16875 +0.2 1.3 NagC family transcriptional regulator compare
BBR_RS14775 +0.2 1.0 hypothetical protein compare
BBR_RS16100 +0.2 0.8 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein compare
BBR_RS14955 +0.2 1.2 hypothetical protein compare
BBR_RS16585 +0.2 1.4 BAX inhibitor (BI)-1/YccA family protein compare
BBR_RS13865 +0.2 1.3 RNA methyltransferase compare
BBR_RS15825 +0.2 1.4 deoxyribonuclease IV compare
BBR_RS10935 +0.2 1.6 haloacid dehalogenase compare
BBR_RS13545 +0.2 0.9 DUF4143 domain-containing protein compare
BBR_RS20615 +0.2 1.0 GNAT family N-acetyltransferase compare
BBR_RS15415 +0.2 0.9 choloylglycine hydrolase compare
BBR_RS17245 +0.2 1.4 serpin family protein compare
BBR_RS18530 +0.2 1.0 low molecular weight phosphotyrosine protein phosphatase compare
BBR_RS14225 +0.2 1.1 ComF family protein compare
BBR_RS16990 +0.2 1.4 cation transporter compare
BBR_RS16280 +0.2 1.2 solute binding protein of ABC transporter system compare
BBR_RS20785 +0.2 0.4 PadR family transcriptional regulator compare
BBR_RS16385 +0.2 0.9 hypothetical protein compare
BBR_RS17050 +0.2 1.3 histidinol-phosphate transaminase compare
BBR_RS16025 +0.2 1.0 hypothetical protein compare
BBR_RS17215 +0.2 1.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BBR_RS15300 +0.2 0.9 peroxiredoxin compare
BBR_RS20835 +0.2 0.9 hypothetical protein compare
BBR_RS15820 +0.2 0.8 SOS response-associated peptidase compare
BBR_RS14790 +0.2 1.1 phosphorylase compare
BBR_RS15195 +0.2 1.3 NAD(P) transhydrogenase subunit beta compare
BBR_RS10890 +0.2 1.5 LacI family transcriptional regulator compare
BBR_RS10920 +0.2 0.8 hypothetical protein compare
BBR_RS14820 +0.2 1.1 MFS transporter compare
BBR_RS15550 +0.2 0.5 L-lactate dehydrogenase compare
BBR_RS17165 +0.2 1.2 tRNA dihydrouridine synthase DusB compare
BBR_RS15150 +0.2 1.1 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BBR_RS18345 +0.2 1.1 hypothetical protein compare
BBR_RS17230 +0.2 1.3 hypothetical protein compare
BBR_RS20795 +0.2 0.4 cystathionine gamma-lyase compare
BBR_RS18130 +0.2 1.4 glucokinase compare
BBR_RS11875 +0.2 1.4 carbohydrate ABC transporter permease compare
BBR_RS20500 +0.2 1.4 hypothetical protein compare
BBR_RS14905 +0.2 1.1 two-component sensor histidine kinase compare
BBR_RS15325 +0.2 0.6 hypothetical protein compare
BBR_RS14740 +0.2 0.6 YccF domain-containing protein compare
BBR_RS16330 +0.2 1.0 LacI family transcriptional regulator compare
BBR_RS17355 +0.2 1.3 phosphatase PAP2 family protein compare
BBR_RS14445 +0.2 1.0 Solute-binding protein of ABC transporter system compare
BBR_RS19345 +0.2 0.6 tRNA-Val compare
BBR_RS16185 +0.2 1.0 transposase compare
BBR_RS16075 +0.2 0.7 hypothetical protein compare
BBR_RS12105 +0.2 1.3 ABC transporter ATP-binding protein compare
BBR_RS17025 +0.2 1.1 DUF2252 domain-containing protein compare
BBR_RS20820 +0.2 1.0 beta-glucosidase compare
BBR_RS17180 +0.2 1.1 ABC transporter ATP-binding protein compare
BBR_RS16150 +0.2 0.9 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS18455 +0.2 0.9 DUF4192 domain-containing protein compare
BBR_RS17075 +0.2 1.0 dihydrodipicolinate synthase family protein compare
BBR_RS18285 +0.2 1.3 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Suberic acid across organisms