Experiment set12IT039 for Herbaspirillum seropedicae SmR1

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
HSERO_RS23945 -4.4 -3.0 cobyric acid synthase CobQ compare
HSERO_RS15070 -4.0 -1.6 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS20985 -3.0 -1.6 serine acetyltransferase compare
HSERO_RS04325 -2.9 -6.7 helicase I compare
HSERO_RS02330 -2.7 -11.2 aspartate carbamoyltransferase compare
HSERO_RS02340 -2.7 -20.1 dihydroorotase compare
HSERO_RS19590 -2.5 -1.3 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS17110 -2.4 -3.2 ribonuclease H compare
HSERO_RS16470 -2.4 -5.2 tryptophan synthase subunit alpha compare
HSERO_RS04330 -2.2 -6.6 ATP-dependent exonuclease compare
HSERO_RS17815 -2.2 -1.5 glycosyl transferase compare
HSERO_RS16075 -2.1 -1.9 coproporphyrinogen III oxidase compare
HSERO_RS08990 -2.0 -4.1 heat shock protein 90 compare
HSERO_RS10460 -2.0 -2.2 homoserine dehydrogenase compare
HSERO_RS16475 -2.0 -2.4 tryptophan synthase subunit alpha compare
HSERO_RS15040 -1.9 -7.0 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS02325 -1.9 -7.1 uracil phosphoribosyltransferase compare
HSERO_RS19995 -1.8 -1.4 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS07600 -1.6 -4.2 threonine-phosphate decarboxylase compare
HSERO_RS22135 -1.5 -13.9 DNA helicase compare
HSERO_RS08430 -1.5 -5.0 diguanylate cyclase compare
HSERO_RS05515 -1.5 -0.5 glucose-6-phosphate isomerase compare
HSERO_RS22140 -1.5 -9.7 hypothetical protein compare
HSERO_RS08725 -1.5 -4.3 transcriptional regulator compare
HSERO_RS16480 -1.4 -5.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS09660 -1.4 -1.5 ribonuclease III compare
HSERO_RS05970 -1.4 -2.0 ABC transporter compare
HSERO_RS10815 -1.4 -4.7 chromosome segregation protein SMC compare
HSERO_RS08515 -1.4 -2.8 diguanylate cyclase compare
HSERO_RS02215 -1.4 -0.5 D-arabinitol 4-dehydrogenase compare
HSERO_RS01825 -1.4 -2.8 RNA pyrophosphohydrolase compare
HSERO_RS01880 -1.3 -2.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
HSERO_RS16485 -1.3 -6.1 tRNA pseudouridine synthase A compare
HSERO_RS12920 -1.3 -1.3 trigger factor compare
HSERO_RS08115 -1.3 -1.4 acyl-CoA-binding protein compare
HSERO_RS18600 -1.3 -0.8 transcriptional regulator compare
HSERO_RS04335 -1.3 -3.0 sodium:proton antiporter compare
HSERO_RS11765 -1.3 -8.6 peptide ABC transporter compare
HSERO_RS03435 -1.3 -2.2 bacterioferritin compare
HSERO_RS19535 -1.2 -2.9 nucleotide-binding protein compare
HSERO_RS17530 -1.2 -2.7 RpiR family transcriptional regulator compare
HSERO_RS08640 -1.2 -2.2 hypothetical protein compare
HSERO_RS21480 -1.2 -1.1 transcriptional regulator compare
HSERO_RS17810 -1.2 -0.4 glycosyl transferase compare
HSERO_RS22040 -1.2 -2.0 CDP-glucose 4,6-dehydratase compare
HSERO_RS05215 -1.2 -6.7 LysR family transcriptional regulator compare
HSERO_RS19450 -1.2 -3.0 indole-3-glycerol-phosphate synthase compare
HSERO_RS05190 -1.1 -7.1 sugar ABC transporter substrate-binding protein compare
HSERO_RS01780 -1.1 -1.6 translation initiation factor IF-1 compare
HSERO_RS08655 -1.1 -2.0 acetolactate synthase compare
HSERO_RS14320 -1.1 -2.5 FmdB family transcriptional regulator compare
HSERO_RS10160 -1.0 -6.7 flagellar biosynthesis sigma factor compare
HSERO_RS01505 -1.0 -2.8 transketolase compare
HSERO_RS17105 -1.0 -1.3 DNA polymerase III subunit epsilon compare
HSERO_RS18010 -1.0 -0.7 pseudouridine synthase compare
HSERO_RS08795 -1.0 -2.3 transcriptional regulator compare
HSERO_RS09720 -1.0 -2.8 membrane protein compare
HSERO_RS02815 -0.9 -2.3 HxlR family transcriptional regulator compare
HSERO_RS16340 -0.9 -5.5 transcriptional regulator compare
HSERO_RS05200 -0.9 -3.4 ABC transporter permease compare
HSERO_RS21375 -0.9 -2.0 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS19435 -0.9 -5.1 anthranilate synthase subunit I compare
HSERO_RS07160 -0.9 -3.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS18455 -0.9 -1.5 phosphoglycolate phosphatase compare
HSERO_RS05195 -0.9 -3.5 xylose ABC transporter ATP-binding protein compare
HSERO_RS13285 -0.9 -1.8 precorrin-2 C20-methyltransferase compare
HSERO_RS19595 -0.9 -6.5 glutamate synthase compare
HSERO_RS21475 -0.9 -1.4 recombinase XerC compare
HSERO_RS13420 -0.9 -2.2 2-hydroxyacid dehydrogenase compare
HSERO_RS13265 -0.9 -3.1 G3E family GTPase compare
HSERO_RS22175 -0.9 -1.0 hypothetical protein compare
HSERO_RS00220 -0.9 -1.0 hypothetical protein compare
HSERO_RS03540 -0.9 -0.9 dimethyladenosine transferase compare
HSERO_RS19135 -0.9 -1.3 exodeoxyribonuclease compare
HSERO_RS19445 -0.9 -3.5 anthranilate phosphoribosyltransferase compare
HSERO_RS19525 -0.9 -2.3 PTS sugar transporter subunit IIA compare
HSERO_RS09725 -0.8 -5.2 ABC transporter compare
HSERO_RS10175 -0.8 -4.8 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS02205 -0.8 -1.4 phosphatase compare
HSERO_RS00450 -0.8 -1.9 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS18990 -0.8 -2.3 pyrroline-5-carboxylate reductase compare
HSERO_RS12395 -0.8 -3.3 TetR family transcriptional regulator compare
HSERO_RS11010 -0.8 -2.7 RnfH compare
HSERO_RS04150 -0.8 -1.3 hypothetical protein compare
HSERO_RS10290 -0.8 -3.2 flagellar biosynthesis protein FliJ compare
HSERO_RS17090 -0.8 -3.5 growth inhibitor PemK compare
HSERO_RS11855 -0.8 -1.4 hypothetical protein compare
HSERO_RS15575 -0.8 -1.0 uroporphyrin-III C-methyltransferase compare
HSERO_RS08790 -0.8 -0.9 hypothetical protein compare
HSERO_RS09735 -0.8 -2.9 hypothetical protein compare
HSERO_RS10190 -0.8 -3.1 flagellar basal body rod modification protein FlgD compare
HSERO_RS16835 -0.8 -3.1 phosphatidylglycerophosphatase compare
HSERO_RS21340 -0.8 -2.2 septum formation inhibitor protein compare
HSERO_RS07275 -0.8 -2.8 D-amino acid dehydrogenase compare
HSERO_RS20630 -0.8 -1.6 phenylacetic acid degradation protein compare
HSERO_RS14840 -0.8 -2.7 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS09910 -0.8 -1.6 integration host factor subunit alpha compare
HSERO_RS10315 -0.8 -4.9 flagellar hook-basal body protein FliE compare
HSERO_RS14765 -0.8 -1.4 membrane protein compare
HSERO_RS10255 -0.8 -3.9 flagellar biosynthesis protein FliQ compare
HSERO_RS10865 -0.8 -3.8 PII uridylyl-transferase compare
HSERO_RS05225 -0.8 -2.1 L-arabinolactonase (EC 3.1.1.15) (from data) compare
HSERO_RS09235 -0.8 -1.3 MarR family transcriptional regulator compare
HSERO_RS17570 -0.8 -1.2 4-carboxymuconolactone decarboxylase compare
HSERO_RS19335 -0.8 -2.7 ABC transporter permease compare
HSERO_RS21005 -0.7 -3.4 asparagine synthase compare
HSERO_RS15600 -0.7 -4.9 cytosol aminopeptidase compare
HSERO_RS03510 -0.7 -2.3 proline aminopeptidase P II compare
HSERO_RS20480 -0.7 -3.9 hypothetical protein compare
HSERO_RS21000 -0.7 -4.0 aminotransferase DegT compare
HSERO_RS04565 -0.7 -5.2 bacteriophage capsid portal protein compare
HSERO_RS18770 -0.7 -3.0 transcriptional regulator compare
HSERO_RS08935 -0.7 -2.7 transcriptional regulator compare
HSERO_RS10200 -0.7 -5.3 flagellar basal body rod protein FlgF compare
HSERO_RS19090 -0.7 -1.1 C4-dicarboxylate ABC transporter compare
HSERO_RS03520 -0.7 -1.5 aminoglycoside phosphotransferase compare
HSERO_RS00810 -0.7 -1.4 glutaredoxin compare
HSERO_RS02160 -0.7 -1.2 DNA-dependent helicase compare
HSERO_RS21370 -0.7 -1.5 dihydrolipoamide acyltransferase compare
HSERO_RS05980 -0.7 -1.4 aldehyde dehydrogenase compare
HSERO_RS10215 -0.7 -3.0 flagellar P-ring protein FlgI compare
HSERO_RS13440 -0.7 -2.5 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase compare
HSERO_RS15655 -0.7 -1.0 methylcitrate synthase compare
HSERO_RS01935 -0.7 -3.8 3-dehydroquinate dehydratase compare
HSERO_RS08635 -0.7 -2.3 hypothetical protein compare
HSERO_RS02260 -0.7 -1.5 DNA polymerase I compare
HSERO_RS22845 -0.7 -4.2 LysR family transcriptional regulator compare
HSERO_RS06600 -0.7 -2.2 hypothetical protein compare
HSERO_RS10195 -0.7 -4.5 flagellar hook protein FlgE compare
HSERO_RS16035 -0.7 -1.4 cytochrome C oxidase compare
HSERO_RS17580 -0.7 -2.6 hypothetical protein compare
HSERO_RS08770 -0.7 -3.3 membrane protein compare
HSERO_RS16055 -0.7 -2.7 cytochrome oxidase subunit I compare
HSERO_RS11955 -0.7 -1.2 stress protein compare
HSERO_RS14365 -0.7 -1.8 nitrogen fixation protein NifZ compare
HSERO_RS06915 -0.7 -1.8 hypothetical protein compare
HSERO_RS23655 -0.7 -1.2 phosphonate ABC transporter permease compare
HSERO_RS21450 -0.7 -1.2 lipid A biosynthesis acyltransferase compare
HSERO_RS21040 -0.7 -2.9 3-oxoacyl-ACP synthase compare
HSERO_RS02910 -0.7 -1.7 IclR family transcriptional regulator compare
HSERO_RS01220 -0.7 -2.1 phospholipase compare
HSERO_RS20920 -0.7 -3.3 3-dehydroquinate synthase compare
HSERO_RS10205 -0.6 -3.6 flagellar basal body rod protein FlgG compare
HSERO_RS14165 -0.6 -1.9 hypothetical protein compare
HSERO_RS12690 -0.6 -1.8 transcriptional regulator compare
HSERO_RS04570 -0.6 -4.0 hypothetical protein compare
HSERO_RS13515 -0.6 -1.8 XRE family transcriptional regulator compare
HSERO_RS23640 -0.6 -1.6 Ni/Fe hydrogenase compare
HSERO_RS13660 -0.6 -1.4 membrane protein compare
HSERO_RS01125 -0.6 -1.4 bacteriophage transcription regulator protein compare
HSERO_RS16275 -0.6 -1.0 5-hydroxyisourate hydrolase compare
HSERO_RS22565 -0.6 -1.0 AraC family transcriptional regulator compare
HSERO_RS14315 -0.6 -2.4 hypothetical protein compare
HSERO_RS13560 -0.6 -2.3 transcriptional regulator compare
HSERO_RS01945 -0.6 -2.8 hypothetical protein compare
HSERO_RS08335 -0.6 -2.0 4-hydroxyphenylpyruvate dioxygenase compare
HSERO_RS01370 -0.6 -4.2 MFS transporter compare
HSERO_RS20560 -0.6 -2.4 allophanate hydrolase compare
HSERO_RS22205 -0.6 -1.0 L-rhamnose mutarotase compare
HSERO_RS16065 -0.6 -2.6 cation transporter compare
HSERO_RS17485 -0.6 -1.6 transcription regulator protein compare
HSERO_RS09215 -0.6 -2.6 D-aminopeptidase compare
HSERO_RS16070 -0.6 -0.8 cytochrome biogenesis protein compare
HSERO_RS10295 -0.6 -3.0 ATP synthase compare
HSERO_RS01030 -0.6 -2.2 tail-like protein compare
HSERO_RS02090 -0.6 -0.6 Holliday junction DNA helicase RuvA compare
HSERO_RS04340 -0.6 -2.7 gamma-glutamyl ligase compare
HSERO_RS06680 -0.6 -2.1 6-hydroxynicotinate 3-monooxygenase compare
HSERO_RS21035 -0.6 -1.5 hypothetical protein compare
HSERO_RS18365 -0.6 -1.4 hypothetical protein compare
HSERO_RS08775 -0.6 -1.2 membrane protein compare
HSERO_RS19055 -0.6 -2.5 oxidoreductase compare
HSERO_RS17030 -0.6 -2.5 xylulokinase compare
HSERO_RS10870 -0.6 -3.7 methionine aminopeptidase compare
HSERO_RS15365 -0.6 -1.9 MarR family transcriptional regulator compare
HSERO_RS12300 -0.6 -1.6 hypothetical protein compare
HSERO_RS08660 -0.6 -1.5 ketol-acid reductoisomerase compare
HSERO_RS02880 -0.6 -2.6 SAM-dependent methyltransferase compare
HSERO_RS19050 -0.6 -2.1 3-oxoacyl-ACP reductase compare
HSERO_RS14325 -0.6 -1.9 hypothetical protein compare
HSERO_RS19005 -0.6 -2.5 glutathione peroxidase compare
HSERO_RS18975 -0.6 -1.5 hypothetical protein compare
HSERO_RS14300 -0.6 -2.5 nitrogenase iron protein compare
HSERO_RS20980 -0.6 -2.4 oxidoreductase compare
HSERO_RS21990 -0.6 -1.0 hypothetical protein compare
HSERO_RS10185 -0.6 -3.0 flagellar basal body rod protein FlgC compare
HSERO_RS02760 -0.6 -1.0 hypothetical protein compare
HSERO_RS22455 -0.6 -2.4 AraC family transcriptional regulator compare
HSERO_RS15780 -0.6 -2.0 GntR family transcriptional regulator compare
HSERO_RS22305 -0.6 -1.9 oxidoreductase compare
HSERO_RS01425 -0.6 -1.6 DNA-binding protein compare
HSERO_RS07465 -0.6 -2.5 alpha/beta hydrolase compare
HSERO_RS17405 -0.6 -4.9 hypothetical protein compare
HSERO_RS16115 -0.6 -2.1 hypothetical protein compare
HSERO_RS07890 -0.6 -1.3 hypothetical protein compare
HSERO_RS21055 -0.6 -2.3 hypothetical protein compare
HSERO_RS17465 -0.6 -3.1 TetR family transcriptional regulator compare
HSERO_RS02350 -0.6 -3.3 diadenosine tetraphosphatase compare
HSERO_RS01365 -0.5 -1.5 TetR family transcriptional regulator compare
HSERO_RS19460 -0.5 -1.6 LysR family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment