Experiment set12IT038 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Lacidipine 0.4 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS14210 -4.8 -3.3 hypothetical protein compare
BBR_RS10255 -4.7 -5.6 chromosomal replication initiator protein DnaA compare
BBR_RS15085 -4.5 -3.1 3-dehydroquinate synthase compare
BBR_RS13040 -4.4 -3.1 CHAP domain-containing protein compare
BBR_RS20480 -4.3 -2.8 membrane protein compare
BBR_RS16675 -3.9 -4.6 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS14240 -3.7 -6.7 1,4-alpha-glucan branching protein GlgB compare
BBR_RS13030 -3.6 -3.5 cell division ATP-binding protein FtsE compare
BBR_RS13035 -3.6 -2.4 ABC transporter permease compare
BBR_RS16965 -3.4 -2.4 ATP-dependent DNA helicase compare
BBR_RS18050 -3.3 -3.2 threonylcarbamoyl-AMP synthase compare
BBR_RS12545 -3.1 -4.7 DUF4012 domain-containing protein compare
BBR_RS15440 -3.0 -4.1 orotidine-5'-phosphate decarboxylase compare
BBR_RS15090 -3.0 -2.0 type II 3-dehydroquinate dehydratase compare
BBR_RS13770 -2.9 -3.5 DNA repair protein RecO compare
BBR_RS10445 -2.9 -18.5 HlyC/CorC family transporter compare
BBR_RS19435 -2.9 -2.0 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS10625 -2.9 -3.4 FHA domain-containing protein compare
BBR_RS13635 -2.7 -8.4 carbamoyl-phosphate synthase large subunit compare
BBR_RS15070 -2.7 -4.1 endolytic transglycosylase MltG compare
BBR_RS15080 -2.6 -4.0 chorismate synthase compare
BBR_RS10620 -2.6 -4.9 phosphoprotein phosphatase compare
BBR_RS20430 -2.5 -4.8 hypothetical protein compare
BBR_RS19120 -2.5 -11.4 helicase compare
BBR_RS19540 -2.4 -3.2 homoserine dehydrogenase compare
BBR_RS21015 -2.4 -3.2 hypothetical protein compare
BBR_RS19190 -2.4 -8.3 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS12375 -2.3 -2.2 pantetheine-phosphate adenylyltransferase compare
BBR_RS12235 -2.2 -2.5 hypothetical protein compare
BBR_RS18690 -2.2 -6.9 diacylglycerol kinase compare
BBR_RS15425 -2.2 -2.5 aspartate carbamoyltransferase compare
BBR_RS14260 -2.1 -1.9 ABC transporter ATP-binding protein compare
BBR_RS16640 -2.1 -3.0 ABC transporter permease compare
BBR_RS14370 -2.1 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS11315 -2.1 -12.5 MFS transporter compare
BBR_RS20440 -2.0 -7.3 NUDIX hydrolase compare
BBR_RS12905 -2.0 -3.8 galactose-1-phosphate uridylyltransferase compare
BBR_RS18725 -2.0 -3.6 ribonuclease HI compare
BBR_RS20465 -2.0 -8.1 chromosome partitioning protein compare
BBR_RS15055 -2.0 -2.9 hypothetical protein compare
BBR_RS15435 -1.9 -3.5 dihydroorotase compare
BBR_RS20460 -1.8 -4.5 chromosome partitioning protein ParB compare
BBR_RS14265 -1.8 -4.8 Solute-binding protein of ABC transporter system for metals compare
BBR_RS18565 -1.8 -1.5 CHAP domain-containing protein compare
BBR_RS13735 -1.8 -2.3 Lon protease compare
BBR_RS12500 -1.7 -1.5 sugar ABC transporter permease compare
BBR_RS10580 -1.7 -1.7 septation inhibitor protein compare
BBR_RS11470 -1.7 -1.8 6-phosphogluconolactonase compare
BBR_RS14330 -1.7 -1.9 glycogen debranching enzyme GlgX compare
BBR_RS12590 -1.6 -3.6 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS19390 -1.6 -1.9 hypothetical protein compare
BBR_RS15650 -1.6 -2.7 Holliday junction resolvase compare
BBR_RS19815 -1.6 -12.0 ABC transporter permease compare
BBR_RS18735 -1.6 -9.4 hypothetical protein compare
BBR_RS15915 -1.6 -1.5 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS12310 -1.6 -2.2 signal recognition particle protein compare
BBR_RS19800 -1.6 -13.5 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS14280 -1.6 -1.1 dephospho-CoA kinase compare
BBR_RS14070 -1.6 -5.2 threonine synthase compare
BBR_RS11770 -1.5 -2.9 chorismate mutase compare
BBR_RS19465 -1.5 -3.1 ribonuclease E/G compare
BBR_RS14495 -1.5 -2.8 trigger factor compare
BBR_RS19820 -1.5 -9.9 ATP-binding protein of ABC transporter system compare
BBR_RS15785 -1.4 -2.4 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS14205 -1.4 -2.7 hypothetical protein compare
BBR_RS19170 -1.4 -10.1 DNA-binding response regulator compare
BBR_RS19125 -1.4 -5.3 hypothetical protein compare
BBR_RS17155 -1.4 -1.5 cell division protein SepF compare
BBR_RS16635 -1.4 -2.1 ABC transporter ATP-binding protein compare
BBR_RS15050 -1.4 -2.8 DUF948 domain-containing protein compare
BBR_RS20455 -1.3 -5.8 thioredoxin-disulfide reductase compare
BBR_RS19375 -1.3 -1.6 acyl-CoA carboxylase subunit beta compare
BBR_RS14140 -1.3 -2.1 Ppx/GppA family phosphatase compare
BBR_RS16400 -1.3 -2.2 hypothetical protein compare
BBR_RS16625 -1.3 -4.1 DUF3710 domain-containing protein compare
BBR_RS14540 -1.3 -2.6 Na+/H+ antiporter NhaA compare
BBR_RS13630 -1.2 -3.5 carbamoyl-phosphate synthase small subunit compare
BBR_RS13805 -1.2 -2.1 hypothetical protein compare
BBR_RS19165 -1.2 -2.2 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS21170 -1.2 -6.7 membrane protein insertion efficiency factor YidD compare
BBR_RS16515 -1.2 -2.9 preprotein translocase subunit SecA compare
BBR_RS13820 -1.2 -1.5 ATP-binding protein compare
BBR_RS13300 -1.1 -1.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS19535 -1.1 -7.7 homoserine kinase compare
BBR_RS16430 -1.0 -2.2 nucleotide pyrophosphatase compare
BBR_RS14230 -1.0 -3.6 HAMP domain-containing histidine kinase compare
BBR_RS16490 -1.0 -3.1 polyprenyl synthase compare
BBR_RS14625 -1.0 -4.4 pyrroline-5-carboxylate reductase compare
BBR_RS15155 -1.0 -2.3 histidine triad nucleotide-binding protein compare
BBR_RS13370 -1.0 -1.8 phosphoribosylamine--glycine ligase compare
BBR_RS14190 -1.0 -4.7 transcriptional regulator compare
BBR_RS19155 -1.0 -5.2 phosphate ABC transporter, permease protein PstA compare
BBR_RS12305 -1.0 -4.3 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS18180 -1.0 -4.6 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS12605 -1.0 -2.1 glycosyltransferase family 2 protein compare
BBR_RS15130 -1.0 -2.0 metal-sulfur cluster assembly factor compare
BBR_RS12900 -0.9 -1.3 DeoR/GlpR transcriptional regulator compare
BBR_RS18035 -0.9 -2.2 oligoribonuclease compare
BBR_RS10900 -0.9 -1.4 molecular chaperone DnaK compare
BBR_RS15870 -0.9 -1.5 hypothetical protein compare
BBR_RS13985 -0.9 -3.2 membrane protein compare
BBR_RS19160 -0.9 -1.2 phosphate ABC transporter permease subunit PstC compare
BBR_RS12245 -0.9 -1.4 polyribonucleotide nucleotidyltransferase compare
BBR_RS13640 -0.9 -3.1 orotidine-5'-phosphate decarboxylase compare
BBR_RS13455 -0.8 -1.9 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS15520 -0.8 -1.5 shikimate 5-dehydrogenase compare
BBR_RS16985 -0.8 -2.2 transcriptional repressor LexA compare
BBR_RS16425 -0.8 -1.6 DUF3071 domain-containing protein compare
BBR_RS11665 -0.8 -2.3 hypothetical protein compare
BBR_RS18575 -0.8 -2.2 hypothetical protein compare
BBR_RS10755 -0.8 -2.7 adenylosuccinate synthase compare
BBR_RS11640 -0.8 -1.4 hypothetical protein compare
BBR_RS11175 -0.8 -5.5 penicillin-binding protein compare
BBR_RS16755 -0.8 -2.8 site-specific tyrosine recombinase XerD compare
BBR_RS15455 -0.8 -1.1 orotate phosphoribosyltransferase compare
BBR_RS16670 -0.8 -2.7 hypothetical protein compare
BBR_RS20830 -0.7 -1.3 hypothetical protein compare
BBR_RS10265 -0.7 -4.8 DNA replication and repair protein RecF compare
BBR_RS15860 -0.7 -0.8 DUF2316 domain-containing protein compare
BBR_RS16795 -0.7 -1.6 Cys-tRNA(Pro) deacylase compare
BBR_RS16555 -0.7 -0.8 DNA translocase FtsK compare
BBR_RS15230 -0.7 -2.6 elongation factor 4 compare
BBR_RS16750 -0.7 -1.6 ParA family protein compare
BBR_RS13305 -0.7 -2.4 transcriptional repressor compare
BBR_RS19755 -0.7 -4.7 glycosyl transferase compare
BBR_RS16060 -0.7 -1.5 hypothetical protein compare
BBR_RS19795 -0.7 -6.2 hypothetical protein compare
BBR_RS13490 -0.7 -1.0 30S ribosomal protein S7 compare
BBR_RS15880 -0.7 -1.9 hypothetical protein compare
BBR_RS17440 -0.7 -0.9 DUF3027 domain-containing protein compare
BBR_RS18140 -0.6 -0.9 tRNA-Asp compare
BBR_RS19645 -0.6 -3.7 RNA degradosome polyphosphate kinase compare
BBR_RS13980 -0.6 -2.4 HD domain-containing protein compare
BBR_RS20690 -0.6 -0.8 hypothetical protein compare
BBR_RS15670 -0.6 -1.8 adenine phosphoribosyltransferase compare
BBR_RS17290 -0.6 -2.8 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS16610 -0.6 -1.6 hypothetical protein compare
BBR_RS10720 -0.6 -5.1 PDZ domain-containing protein compare
BBR_RS11205 -0.6 -2.3 HPr family phosphocarrier protein compare
BBR_RS10940 -0.6 -4.2 DedA family protein compare
BBR_RS18700 -0.6 -3.6 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS12785 -0.6 -1.6 transcriptional regulator compare
BBR_RS20700 -0.6 -1.7 ribulose phosphate epimerase compare
BBR_RS16940 -0.6 -1.9 hypothetical protein compare
BBR_RS15170 -0.6 -3.1 HlyC/CorC family transporter compare
BBR_RS11210 -0.6 -4.2 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS15180 -0.6 -3.0 long-chain fatty acid--CoA ligase compare
BBR_RS17480 -0.6 -2.3 hypothetical protein compare
BBR_RS14200 -0.6 -1.7 WhiB family transcriptional regulator compare
BBR_RS20800 -0.6 -0.9 hypothetical protein compare
BBR_RS17640 -0.6 -0.9 DNA-directed RNA polymerase subunit omega compare
BBR_RS16240 -0.6 -1.7 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS15760 -0.6 -1.5 MerR family transcriptional regulator compare
BBR_RS18695 -0.6 -2.8 PRD domain-containing protein compare
BBR_RS12980 -0.6 -4.0 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS20935 -0.6 -0.8 hypothetical protein compare
BBR_RS15550 -0.6 -1.7 L-lactate dehydrogenase compare
BBR_RS16220 -0.5 -0.6 DNA cytosine methyltransferase compare
BBR_RS10990 -0.5 -2.6 recombination protein RecR compare
BBR_RS12355 -0.5 -1.4 ribonuclease III compare
BBR_RS16685 -0.5 -1.1 alcohol dehydrogenase compare
BBR_RS18215 -0.5 -2.5 AI-2E family transporter compare
BBR_RS17455 -0.5 -2.9 DNA-binding response regulator compare
BBR_RS16135 -0.5 -1.0 peptide deformylase compare
BBR_RS15450 -0.5 -1.6 dihydroorotate dehydrogenase compare
BBR_RS14615 -0.5 -2.9 histidine kinase compare
BBR_RS17030 -0.5 -2.0 bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase PriA compare
BBR_RS17305 -0.5 -2.0 hypothetical protein compare
BBR_RS12975 -0.5 -3.5 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12575 -0.5 -1.4 hypothetical protein compare
BBR_RS17490 -0.5 -3.0 MoxR family ATPase compare
BBR_RS20720 -0.5 -2.0 DUF4422 domain-containing protein compare
BBR_RS17135 -0.5 -0.6 RluA family pseudouridine synthase compare
BBR_RS20955 -0.5 -0.5 hypothetical protein compare
BBR_RS16600 -0.5 -3.0 aconitate hydratase AcnA compare
BBR_RS16015 -0.5 -1.0 DUF2089 domain-containing protein compare
BBR_RS20725 -0.5 -1.7 hypothetical protein compare
BBR_RS12365 -0.5 -1.8 DUF177 domain-containing protein compare
BBR_RS14290 -0.4 -1.8 TerC family protein compare
BBR_RS13905 -0.4 -1.5 ornithine carbamoyltransferase compare
BBR_RS15895 -0.4 -1.2 hypothetical protein compare
BBR_RS12805 -0.4 -0.8 hypothetical protein compare
BBR_RS15655 -0.4 -1.6 Holliday junction branch migration protein RuvA compare
BBR_RS16820 -0.4 -0.9 RNA polymerase sigma factor RpoE compare
BBR_RS19760 -0.4 -0.8 polysaccharide ABC transporter ATPase compare
BBR_RS15370 -0.4 -1.3 macro domain-containing protein compare
BBR_RS20815 -0.4 -1.5 potassium transporter Trk compare
BBR_RS20825 -0.4 -0.7 hypothetical protein compare
BBR_RS15300 -0.4 -1.3 peroxiredoxin compare
BBR_RS16520 -0.4 -2.0 ribosome-associated translation inhibitor RaiA compare
BBR_RS13505 -0.4 -1.7 DUF4391 domain-containing protein compare
BBR_RS13515 -0.4 -1.9 putative sulfate exporter family transporter compare
BBR_RS14130 -0.4 -0.7 septum formation initiator family protein compare
BBR_RS11295 -0.4 -2.2 transcriptional regulator compare
BBR_RS11510 -0.4 -0.6 signal recognition particle-docking protein FtsY compare
BBR_RS10570 -0.4 -1.6 hypothetical protein compare
BBR_RS17295 -0.4 -0.9 RNA-binding protein compare
BBR_RS20840 -0.4 -1.2 hypothetical protein compare
BBR_RS21100 -0.4 -1.2 hypothetical protein compare
BBR_RS15340 -0.4 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Lacidipine across organisms