Experiment set12IT030 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Naringin 250 ug/ml

200 most important genes:

  gene name fitness t score description  
Psyr_4009 -4.5 -10.1 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1544 -4.0 -6.6 SirA-like protein compare
Psyr_4740 -3.8 -8.1 thiazole-phosphate synthase compare
Psyr_4340 -3.7 -12.0 phosphomethylpyrimidine kinase, putative compare
Psyr_1613 -3.1 -6.7 septum site-determining protein MinC compare
Psyr_4687 -2.7 -9.2 biotin synthase compare
Psyr_4341 -2.7 -7.4 thiamine-phosphate diphosphorylase compare
Psyr_0487 -2.7 -4.6 glutathione synthase compare
Psyr_4686 -2.7 -7.8 8-amino-7-oxononanoate synthase compare
Psyr_0951 -2.6 -4.4 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_0014 -2.6 -7.0 lipid A biosynthesis acyltransferase compare
Psyr_4683 -2.6 -5.1 dethiobiotin synthase compare
Psyr_4627 -2.6 -4.0 dimethyladenosine transferase compare
Psyr_0849 -2.6 -12.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0383 -2.5 -2.3 Twin-arginine translocation protein TatB compare
Psyr_1556 -2.4 -3.0 hypothetical protein compare
Psyr_1751 -2.3 -6.5 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4008 -2.3 -16.2 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_0454 -2.3 -6.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4684 -2.2 -3.1 biotin synthesis protein BioC compare
Psyr_0565 -2.1 -6.2 Protein of unknown function UPF0126 compare
Psyr_4091 -2.0 -4.4 8-oxo-dGTPase compare
Psyr_4194 -1.8 -5.1 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_0044 -1.8 -1.7 transferase hexapeptide repeat protein compare
Psyr_4203 -1.8 -2.3 SsrA-binding protein compare
Psyr_3620 -1.7 -2.8 hypothetical protein compare
Psyr_0215 -1.7 -9.3 Exodeoxyribonuclease III xth compare
Psyr_3208 -1.7 -3.6 NADH dehydrogenase subunit M compare
Psyr_2980 -1.7 -4.4 UDP-glucose pyrophosphorylase compare
Psyr_3886 -1.6 -2.3 methionyl-tRNA synthetase compare
Psyr_0255 -1.6 -2.7 glutamate-cysteine ligase compare
Psyr_0918 -1.6 -9.2 ABC transporter compare
Psyr_0033 -1.5 -3.9 tryptophan synthase, alpha chain compare
Psyr_1907 -1.5 -3.7 GTP cyclohydrolase I compare
Psyr_3255 -1.4 -3.1 multisubunit potassium/proton antiporter, PhaE subunit compare
Psyr_2112 -1.4 -2.2 Protein with unknown function DUF469 compare
Psyr_0917 -1.4 -7.3 ABC-2 compare
Psyr_3808 -1.4 -2.1 hypothetical protein compare
Psyr_1555 -1.3 -3.0 Cobyrinic acid a,c-diamide synthase compare
Psyr_3807 -1.3 -5.6 hypothetical protein compare
Psyr_3008 -1.3 -3.8 Undecaprenyl-diphosphatase compare
Psyr_2141 -1.3 -2.5 hypothetical protein compare
Psyr_2642 -1.3 -4.0 hypothetical protein compare
Psyr_1667 -1.3 -4.1 Colicin V production protein compare
Psyr_0475 -1.2 -2.1 Protein of unknown function YGGT compare
Psyr_4007 -1.2 -7.4 Secretion protein HlyD compare
Psyr_1024 -1.2 -2.4 Flavodoxin/nitric oxide synthase compare
Psyr_1930 -1.2 -3.9 hypothetical protein compare
Psyr_4991 -1.1 -2.4 hypothetical protein compare
Psyr_2848 -1.1 -3.2 hypothetical protein compare
Psyr_2471 -1.1 -1.9 hydroxymethylglutaryl-CoA lyase compare
Psyr_3806 -1.1 -3.4 hypothetical protein compare
Psyr_3287 -1.1 -2.5 DNA topoisomerase I compare
Psyr_4015 -1.1 -2.3 conserved domain protein compare
Psyr_2854 -1.1 -3.2 conserved hypothetical protein compare
Psyr_RNA61 -1.0 -1.7 tRNA-Gly compare
Psyr_1650 -1.0 -2.1 aminodeoxychorismate lyase apoprotein compare
Psyr_2080 -1.0 -4.0 aminodeoxychorismate synthase, subunit I compare
Psyr_3213 -1.0 -2.4 Propeptide, PepSY amd peptidase M4 compare
Psyr_3202 -1.0 -1.7 NADH dehydrogenase subunit G compare
Psyr_3954 -1.0 -3.8 GTP-binding protein LepA compare
Psyr_0259 -1.0 -2.4 Osmolarity sensor protein envZ compare
Psyr_0571 -1.0 -3.2 tRNA isopentenyltransferase compare
Psyr_2285 -1.0 -2.0 Twin-arginine translocation pathway signal compare
Psyr_0579 -1.0 -6.3 RNAse R compare
Psyr_4057 -1.0 -3.1 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_1022 -0.9 -2.2 conserved hypothetical protein compare
Psyr_4754 -0.9 -1.5 16S rRNA m(2)G-966 methyltransferase compare
Psyr_0574 -0.9 -3.1 protease FtsH subunit HflK compare
Psyr_3090 -0.9 -1.6 hypothetical protein compare
Psyr_3179 -0.9 -2.5 DNA translocase FtsK compare
Psyr_0575 -0.9 -2.0 protease FtsH subunit HflC compare
Psyr_4362 -0.9 -1.6 Rare lipoprotein A compare
Psyr_2378 -0.9 -3.8 transcriptional regulator, TetR family compare
Psyr_1616 -0.9 -2.7 Rieske [2Fe-2S] region compare
Psyr_1910 -0.9 -3.8 VacJ-like lipoprotein compare
Psyr_0202 -0.9 -4.5 transcriptional regulator, LysR family compare
Psyr_1097 -0.9 -1.7 glycine cleavage system H protein compare
Psyr_3290 -0.9 -1.8 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_3127 -0.8 -2.4 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_4804 -0.8 -1.9 conserved hypothetical protein compare
Psyr_3684 -0.8 -2.1 NLP/P60 compare
Psyr_1844 -0.8 -2.5 conserved hypothetical protein compare
Psyr_0541 -0.8 -2.6 Small multidrug resistance protein compare
Psyr_3198 -0.8 -1.4 NADH dehydrogenase subunit B compare
Psyr_4464 -0.8 -1.2 lipoprotein, putative compare
Psyr_2738 -0.8 -3.2 regulatory protein, LysR compare
Psyr_2084 -0.8 -2.6 transcriptional regulator, GntR family compare
Psyr_4519 -0.8 -4.2 General substrate transporter:Major facilitator superfamily compare
Psyr_3835 -0.8 -1.7 hypothetical protein compare
Psyr_1935 -0.8 -3.0 Protein of unknown function DUF796 compare
Psyr_0498 -0.8 -1.8 Protein of unknown function DUF1445 compare
Psyr_1268 -0.8 -4.1 extracellular solute-binding protein, family 3:SLT compare
Psyr_0377 -0.8 -4.2 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_1547 -0.8 -3.1 glycine cleavage system transcriptional repressor compare
Psyr_3342 -0.8 -1.3 conserved hypothetical protein compare
Psyr_3130 -0.8 -2.4 Secretion protein HlyD compare
Psyr_2842 -0.8 -4.2 hypothetical protein compare
Psyr_3233 -0.8 -2.8 FMN reductase compare
Psyr_1864 -0.8 -3.0 spermidine synthase compare
Psyr_1418 -0.8 -1.9 Radical SAM compare
Psyr_2488 -0.8 -2.2 hypothetical protein compare
Psyr_0826 -0.7 -3.3 glucose-6-phosphate isomerase compare
Psyr_5132 -0.7 -1.8 Glucose-inhibited division protein A subfamily compare
Psyr_0831 -0.7 -1.4 Two-component response regulator CbrB compare
Psyr_2664 -0.7 -3.8 hypothetical protein compare
Psyr_4093 -0.7 -2.4 glutamate N-acetyltransferase compare
Psyr_0394 -0.7 -3.2 Heat shock protein HslU compare
Psyr_0378 -0.7 -3.7 Glycosyl transferase, family 2 compare
Psyr_2899 -0.7 -2.9 conserved hypothetical protein compare
Psyr_1885 -0.7 -1.0 hypothetical protein compare
Psyr_4978 -0.7 -1.5 hypothetical protein compare
Psyr_2501 -0.7 -1.7 Hemerythrin compare
Psyr_2941 -0.7 -2.4 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_1350 -0.7 -1.9 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_3672 -0.7 -2.6 cobalamin-5'-phosphate synthase compare
Psyr_0373 -0.7 -2.1 CDS compare
Psyr_3228 -0.7 -2.4 Glycosyl transferase, group 1 compare
Psyr_4716 -0.7 -2.3 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_0034 -0.7 -2.3 tryptophan synthase, beta chain compare
Psyr_2135 -0.7 -2.0 molybdenum cofactor guanylyltransferase compare
Psyr_3644 -0.7 -2.5 prephenate dehydrogenase compare
Psyr_1924 -0.7 -2.5 hypothetical protein compare
Psyr_4424 -0.7 -4.0 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_0435 -0.7 -1.4 membrane protein, putative compare
Psyr_3040 -0.7 -1.7 conserved hypothetical protein compare
Psyr_2411 -0.7 -1.8 Short-chain dehydrogenase/reductase SDR compare
Psyr_3107 -0.7 -1.0 conserved hypothetical protein compare
Psyr_4408 -0.7 -3.9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3055 -0.7 -0.9 Aminoglycoside phosphotransferase compare
Psyr_3548 -0.7 -2.1 Glutathione S-transferase, N-terminal compare
Psyr_0276 -0.7 -2.2 zinc uptake regulation protein, putative compare
Psyr_3281 -0.7 -1.0 Glycoside hydrolase, family 3, N-terminal compare
Psyr_0791 -0.6 -1.6 MOSC compare
Psyr_4136 -0.6 -1.1 BolA-like protein compare
Psyr_3462 -0.6 -1.3 conserved hypothetical protein compare
Psyr_1152 -0.6 -1.6 transcriptional regulator, ArsR family compare
Psyr_0231 -0.6 -1.6 conserved hypothetical protein compare
Psyr_3867 -0.6 -1.5 hypothetical protein compare
Psyr_4882 -0.6 -3.5 protein translocase subunit secB compare
Psyr_3152 -0.6 -0.7 hypothetical protein compare
Psyr_1212 -0.6 -1.3 type III secretion protein HrpO compare
Psyr_3058 -0.6 -1.5 Amidase compare
Psyr_2743 -0.6 -1.6 Lysine exporter protein (LYSE/YGGA) compare
Psyr_4581 -0.6 -1.2 anthranilate synthase, component II compare
Psyr_4634 -0.6 -1.0 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_2641 -0.6 -1.9 hypothetical protein compare
Psyr_0393 -0.6 -1.9 Protein of unknown function DUF971 compare
Psyr_3640 -0.6 -1.3 conserved hypothetical protein compare
Psyr_2897 -0.6 -2.5 regulatory protein, LuxR:Response regulator receiver compare
Psyr_2747 -0.6 -1.6 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
Psyr_4476 -0.6 -2.5 dTDP-4-dehydrorhamnose reductase compare
Psyr_4789 -0.6 -2.0 lipoprotein, putative compare
Psyr_3180 -0.6 -2.3 Leucyl/phenylalanyl-tRNA--protein transferase compare
Psyr_0053 -0.6 -1.6 conserved hypothetical protein compare
Psyr_2184 -0.6 -1.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_4019 -0.6 -1.6 H-NS family protein MvaT compare
Psyr_3665 -0.6 -1.9 conserved hypothetical protein compare
Psyr_3755 -0.6 -1.6 conserved hypothetical protein compare
Psyr_1929 -0.6 -2.4 hypothetical protein compare
Psyr_4786 -0.6 -1.2 hypothetical protein compare
Psyr_3121 -0.6 -1.0 Protein of unknown function DUF1345 compare
Psyr_3852 -0.6 -1.7 lipoprotein SlyB, putative compare
Psyr_2639 -0.6 -3.0 hypothetical protein compare
Psyr_0153 -0.6 -2.2 conserved hypothetical protein compare
Psyr_4316 -0.6 -1.5 conserved hypothetical protein compare
Psyr_3772 -0.6 -2.3 conserved hypothetical protein compare
Psyr_2182 -0.6 -2.5 hypothetical protein compare
Psyr_1887 -0.6 -2.1 CDS compare
Psyr_3000 -0.6 -1.3 methyltransferase, putative compare
Psyr_4118 -0.6 -3.1 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_1121 -0.6 -0.8 6-phosphogluconolactonase compare
Psyr_5096 -0.6 -2.4 hypothetical protein compare
Psyr_3503 -0.6 -2.4 conserved hypothetical protein compare
Psyr_4151 -0.6 -0.6 Phosphocarrier HPr protein compare
Psyr_0838 -0.6 -1.1 Rieske [2Fe-2S] region compare
Psyr_2921 -0.6 -1.3 ADP-ribosylglycohydrolase compare
Psyr_4380 -0.6 -1.5 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_4143 -0.6 -1.6 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_4566 -0.5 -3.8 Peptidase M23B compare
Psyr_1247 -0.5 -1.4 conserved hypothetical protein compare
Psyr_3952 -0.5 -1.3 conserved hypothetical protein compare
Psyr_3776 -0.5 -1.6 Cytosine deaminase compare
Psyr_3862 -0.5 -2.0 conserved hypothetical protein compare
Psyr_4264 -0.5 -3.2 ABC transporter compare
Psyr_1249 -0.5 -2.0 histidyl-tRNA synthetase compare
Psyr_2190 -0.5 -0.9 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_3854 -0.5 -0.7 OmpA/MotB compare
Psyr_2248 -0.5 -1.8 Phosphonate-binding periplasmic protein compare
Psyr_2860 -0.5 -1.5 hypothetical protein compare
Psyr_2433 -0.5 -2.0 conserved hypothetical protein compare
Psyr_0830 -0.5 -2.5 Poly(A) polymerase compare
Psyr_5129 -0.5 -1.5 chromosome segregation DNA-binding protein compare
Psyr_4085 -0.5 -2.3 hypothetical protein compare
Psyr_1702 -0.5 -2.5 regulatory protein, LuxR compare
Psyr_2447 -0.5 -2.6 CheB methylesterase compare
Psyr_2679 -0.5 -1.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0235 -0.5 -2.5 D-amino acid dehydrogenase small subunit compare
Psyr_1458 -0.5 -1.3 hypothetical protein compare
Psyr_2348 -0.5 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Naringin across organisms