Experiment set12IT028 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Fusaric acid 250 ug/ml

200 most important genes:

  gene name fitness t score description  
Psyr_0603 -5.0 -8.2 N-acylglucosamine 2-epimerase conserved
Psyr_4009 -4.4 -10.1 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1544 -4.0 -6.1 SirA-like protein compare
Psyr_2591 -3.8 -9.1 transport system permease protein compare
Psyr_0951 -3.8 -5.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_0259 -3.8 -5.2 Osmolarity sensor protein envZ compare
Psyr_4008 -3.8 -20.2 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_0215 -3.8 -13.0 Exodeoxyribonuclease III xth compare
Psyr_1613 -3.8 -6.8 septum site-determining protein MinC compare
Psyr_4007 -3.4 -10.5 Secretion protein HlyD compare
Psyr_0383 -3.4 -2.3 Twin-arginine translocation protein TatB compare
Psyr_4138 -3.3 -5.0 Toluene tolerance compare
Psyr_0918 -3.3 -14.7 ABC transporter compare
Psyr_4144 -3.3 -2.5 Protein of unknown function DUF1239 compare
Psyr_4341 -3.2 -9.5 thiamine-phosphate diphosphorylase compare
Psyr_4340 -3.1 -11.3 phosphomethylpyrimidine kinase, putative compare
Psyr_4740 -3.1 -9.4 thiazole-phosphate synthase compare
Psyr_0034 -3.0 -4.5 tryptophan synthase, beta chain compare
Psyr_3008 -3.0 -8.0 Undecaprenyl-diphosphatase compare
Psyr_3287 -2.9 -4.2 DNA topoisomerase I compare
Psyr_0917 -2.9 -10.0 ABC-2 compare
Psyr_2593 -2.8 -5.1 ABC transporter compare
Psyr_2592 -2.8 -5.9 transport system permease protein compare
Psyr_2594 -2.7 -2.4 unknown conserved protein in bacilli compare
Psyr_1910 -2.7 -7.2 VacJ-like lipoprotein compare
Psyr_1614 -2.6 -4.3 lipid A biosynthesis acyltransferase compare
Psyr_4141 -2.6 -7.1 ABC transporter compare
Psyr_2582 -2.5 -10.9 TonB-dependent siderophore receptor compare
Psyr_4519 -2.4 -7.3 General substrate transporter:Major facilitator superfamily compare
Psyr_4139 -2.4 -6.1 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_2854 -2.4 -7.7 conserved hypothetical protein compare
Psyr_1963 -2.4 -6.7 Cyclic peptide transporter compare
Psyr_0033 -2.4 -4.6 tryptophan synthase, alpha chain compare
Psyr_4203 -2.4 -1.6 SsrA-binding protein compare
Psyr_1733 -2.4 -2.4 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_4887 -2.3 -10.8 Peptidase S41A, C-terminal protease compare
Psyr_1556 -2.3 -3.8 hypothetical protein compare
Psyr_0475 -2.3 -3.9 Protein of unknown function YGGT compare
Psyr_0849 -2.3 -10.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0535 -2.2 -4.4 toluene tolerance protein, putative compare
Psyr_3691 -2.2 -8.0 conserved hypothetical protein compare
Psyr_5067 -2.2 -6.5 conserved hypothetical protein compare
Psyr_0014 -2.2 -3.8 lipid A biosynthesis acyltransferase compare
Psyr_4580 -2.1 -5.3 anthranilate phosphoribosyltransferase compare
Psyr_4230 -2.1 -7.4 Helix-turn-helix, Fis-type compare
Psyr_0402 -2.1 -13.4 Peptidoglycan glycosyltransferase compare
Psyr_1247 -2.1 -3.7 conserved hypothetical protein compare
Psyr_1663 -2.0 -4.4 phosphoribosylanthranilate isomerase compare
Psyr_0202 -2.0 -9.4 transcriptional regulator, LysR family compare
Psyr_0574 -1.9 -6.2 protease FtsH subunit HflK compare
Psyr_2590 -1.9 -3.6 Periplasmic binding protein compare
Psyr_0947 -1.9 -6.2 TPR repeat protein:TPR repeat protein compare
Psyr_1584 -1.9 -9.5 Aspartyl/Asparaginyl beta-hydroxylase conserved
Psyr_2112 -1.9 -4.1 Protein with unknown function DUF469 compare
Psyr_3450 -1.8 -4.7 Hpt compare
Psyr_1638 -1.8 -4.4 RNAse E compare
Psyr_4231 -1.8 -9.8 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_4091 -1.7 -4.0 8-oxo-dGTPase compare
Psyr_4408 -1.7 -7.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0525 -1.7 -6.7 Lipopolysaccharide kinase compare
Psyr_0487 -1.6 -3.7 glutathione synthase compare
Psyr_3090 -1.6 -2.5 hypothetical protein compare
Psyr_1930 -1.6 -3.2 hypothetical protein compare
Psyr_2855 -1.6 -3.1 methionine synthase (B12-independent) compare
Psyr_4281 -1.6 -9.5 cytochrome bd quinol oxidase subunit 2 apoprotein compare
Psyr_3695 -1.6 -9.0 RelA/SpoT protein compare
Psyr_4115 -1.6 -2.5 phosphoheptose isomerase compare
Psyr_4920 -1.6 -1.7 conserved hypothetical bacteriophage protein compare
Psyr_4884 -1.6 -5.1 Rhodanese-like protein compare
Psyr_1975 -1.5 -2.8 Integrase, catalytic region compare
Psyr_3013 -1.5 -1.5 magnesium chelatase subunit ChlD compare
Psyr_3954 -1.5 -4.7 GTP-binding protein LepA compare
Psyr_4627 -1.5 -3.3 dimethyladenosine transferase compare
Psyr_1543 -1.5 -8.2 Peptidase M48, Ste24p compare
Psyr_1751 -1.4 -3.4 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0524 -1.4 -2.3 Lipopolysaccharide kinase compare
Psyr_1251 -1.4 -4.2 quinoprotein compare
Psyr_4282 -1.4 -5.9 cytochrome bd quinol oxidase subunit 1 apoprotein compare
Psyr_2838 -1.4 -2.0 conserved hypothetical protein compare
Psyr_1419 -1.3 -2.4 preQ(0) biosynthesis protein QueC compare
Psyr_3807 -1.3 -4.7 hypothetical protein compare
Psyr_2346 -1.3 -4.2 conserved hypothetical protein compare
Psyr_2143 -1.3 -1.2 delta1-piperideine 2-carboxylate reductase compare
Psyr_1097 -1.3 -2.4 glycine cleavage system H protein compare
Psyr_2848 -1.3 -4.3 hypothetical protein compare
Psyr_0550 -1.3 -3.1 Protein of unknown function UPF0227 compare
Psyr_3808 -1.3 -1.3 hypothetical protein compare
Psyr_1955 -1.3 -2.4 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_4978 -1.3 -2.8 hypothetical protein compare
Psyr_4686 -1.3 -4.3 8-amino-7-oxononanoate synthase compare
Psyr_4491 -1.2 -2.4 Deoxyribose-phosphate aldolase compare
Psyr_1964 -1.2 -4.3 Protein of unknown function DUF323 compare
Psyr_1616 -1.2 -3.3 Rieske [2Fe-2S] region compare
Psyr_4140 -1.2 -1.4 Protein of unknown function DUF140 compare
Psyr_4136 -1.2 -2.0 BolA-like protein compare
Psyr_4581 -1.2 -2.2 anthranilate synthase, component II compare
Psyr_3581 -1.2 -3.9 ribosomal large subunit pseudouridine synthase B compare
Psyr_4015 -1.2 -2.7 conserved domain protein compare
Psyr_3152 -1.2 -0.9 hypothetical protein compare
Psyr_1965 -1.2 -3.1 Twin-arginine translocation pathway signal compare
Psyr_0493 -1.2 -2.1 CheW-like protein compare
Psyr_0571 -1.2 -3.4 tRNA isopentenyltransferase compare
Psyr_2562 -1.2 -2.2 hypothetical protein compare
Psyr_2664 -1.1 -5.4 hypothetical protein compare
Psyr_1951 -1.1 -5.0 Periplasmic solute binding protein compare
Psyr_4687 -1.1 -5.6 biotin synthase compare
Psyr_1907 -1.1 -2.3 GTP cyclohydrolase I compare
Psyr_1953 -1.1 -1.8 conserved hypothetical protein compare
Psyr_0735 -1.1 -2.7 Peptidase S24, S26A and S26B compare
Psyr_2292 -1.1 -1.3 L-glutaminase compare
Psyr_4684 -1.1 -2.9 biotin synthesis protein BioC compare
Psyr_3142 -1.1 -2.3 general secretion pathway protein N, putative compare
Psyr_4808 -1.1 -2.2 conserved hypothetical protein compare
Psyr_0920 -1.1 -8.4 Glycosyl transferase, group 1 compare
Psyr_3179 -1.1 -2.5 DNA translocase FtsK compare
Psyr_1948 -1.1 -3.0 ABC transporter, periplasmic substrate-binding protein, putative compare
Psyr_1555 -1.1 -2.8 Cobyrinic acid a,c-diamide synthase compare
Psyr_3419 -1.1 -3.6 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_1885 -1.1 -1.2 hypothetical protein compare
Psyr_3842 -1.1 -4.6 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_1988 -1.1 -3.2 2-keto-3-deoxy-phosphogalactonate aldolase compare
Psyr_1599 -1.1 -7.1 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A compare
Psyr_4683 -1.1 -2.3 dethiobiotin synthase compare
Psyr_5043 -1.1 -4.2 Thioesterase superfamily compare
Psyr_1371 -1.1 -5.1 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_3000 -1.0 -1.4 methyltransferase, putative compare
Psyr_4277 -1.0 -3.6 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region compare
Psyr_4754 -1.0 -1.6 16S rRNA m(2)G-966 methyltransferase compare
Psyr_0255 -1.0 -1.9 glutamate-cysteine ligase compare
Psyr_4112 -1.0 -5.8 Protein of unknown function UPF0011 compare
Psyr_0393 -1.0 -3.3 Protein of unknown function DUF971 compare
Psyr_3208 -1.0 -2.2 NADH dehydrogenase subunit M compare
Psyr_1966 -1.0 -1.9 Peptidase M19, renal dipeptidase compare
Psyr_0394 -1.0 -3.4 Heat shock protein HslU compare
Psyr_1791 -1.0 -2.2 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_3127 -1.0 -2.5 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1667 -1.0 -2.8 Colicin V production protein compare
Psyr_3005 -1.0 -1.4 3-oxoadipate enol-lactonase compare
Psyr_4834 -1.0 -6.2 histidine:proton symporter, AAT family compare
Psyr_2824 -1.0 -3.9 conserved hypothetical protein compare
Psyr_1949 -1.0 -2.4 ABC-3 compare
Psyr_1277 -1.0 -0.9 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_3418 -1.0 -3.3 PilT protein, N-terminal compare
Psyr_3088 -1.0 -4.0 Glycosyl transferase, group 1 compare
Psyr_0919 -1.0 -5.4 Chromosome segregation ATPase-like protein compare
Psyr_2587 -0.9 -2.9 IucA/IucC compare
Psyr_2182 -0.9 -4.0 hypothetical protein compare
Psyr_2092 -0.9 -1.3 Protein of unknown function 1935 compare
Psyr_3246 -0.9 -3.0 Ku compare
Psyr_2847 -0.9 -1.7 hypothetical protein compare
Psyr_3806 -0.9 -3.0 hypothetical protein compare
Psyr_4933 -0.9 -3.3 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_2209 -0.9 -2.0 ABC transporter, substrate-binding protein, aliphatic sulfonate compare
Psyr_1121 -0.9 -1.6 6-phosphogluconolactonase compare
Psyr_4716 -0.9 -2.9 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_2249 -0.9 -2.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0184 -0.9 -2.1 Protein of unknown function DUF484 compare
Psyr_3459 -0.9 -1.8 Helix-turn-helix, Fis-type compare
Psyr_2842 -0.9 -4.6 hypothetical protein compare
Psyr_0549 -0.9 -1.5 Metallophosphoesterase compare
Psyr_0454 -0.9 -3.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1846 -0.9 -3.1 hypothetical protein compare
Psyr_3673 -0.9 -1.4 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_3759 -0.9 -5.1 conserved hypothetical protein compare
Psyr_0529 -0.9 -2.0 Glycosyl transferase, group 1 compare
Psyr_1736 -0.9 -3.1 Helix-turn-helix, Fis-type compare
Psyr_1935 -0.9 -3.9 Protein of unknown function DUF796 compare
Psyr_2641 -0.9 -2.1 hypothetical protein compare
Psyr_3586 -0.9 -3.1 Phosphoesterase PHP, N-terminal:PHP, C-terminal compare
Psyr_0097 -0.9 -3.4 hypothetical protein compare
Psyr_4116 -0.9 -1.3 Transport-associated protein compare
Psyr_2970 -0.9 -2.4 TPR repeat protein:TPR repeat protein compare
Psyr_2585 -0.9 -4.6 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 compare
Psyr_2823 -0.9 -1.2 hypothetical protein compare
Psyr_5078 -0.9 -2.1 conserved hypothetical protein compare
Psyr_0395 -0.8 -2.8 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B compare
Psyr_2069 -0.8 -1.7 conserved hypothetical protein compare
Psyr_1952 -0.8 -1.8 hypothetical protein compare
Psyr_3213 -0.8 -2.4 Propeptide, PepSY amd peptidase M4 compare
Psyr_3420 -0.8 -3.0 conserved hypothetical protein compare
Psyr_0444 -0.8 -0.8 Malonate decarboxylase delta subunit compare
Psyr_5132 -0.8 -2.2 Glucose-inhibited division protein A subfamily compare
Psyr_4416 -0.8 -2.2 precorrin-8X methylmutase compare
Psyr_0265 -0.8 -4.9 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_2080 -0.8 -4.1 aminodeoxychorismate synthase, subunit I compare
Psyr_5133 -0.8 -2.3 tRNA modification GTPase trmE compare
Psyr_2347 -0.8 -1.2 hypothetical protein compare
Psyr_1553 -0.8 -3.6 hypothetical protein compare
Psyr_2607 -0.8 -3.8 regulatory protein, LuxR compare
Psyr_5130 -0.8 -4.4 chromosome segregation ATPase compare
Psyr_2065 -0.8 -2.0 transcription elongation factor GreB compare
Psyr_1968 -0.8 -1.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4996 -0.8 -3.9 hypothetical protein compare
Psyr_2484 -0.8 -4.8 Acriflavin resistance protein compare
Psyr_0835 -0.8 -2.7 transcriptional regulator, TraR/DksA family compare
Psyr_0044 -0.8 -1.4 transferase hexapeptide repeat protein compare
Psyr_4939 -0.8 -2.4 conserved hypothetical protein compare
Psyr_1969 -0.8 -3.4 ABC transporter:Protein of unknown function DUF214 compare
Psyr_0436 -0.8 -1.4 Phosphopantetheine-binding protein compare
Psyr_0491 -0.8 -1.9 chemotaxis sensory transducer compare


Specific Phenotypes

For 12 genes in this experiment

For stress Fusaric acid in Pseudomonas syringae pv. syringae B728a

For stress Fusaric acid across organisms