Experiment set12IT026 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Methanol 5 vol%

200 most important genes:

  gene name fitness t score description  
Psyr_4740 -4.6 -8.7 thiazole-phosphate synthase compare
Psyr_4684 -4.3 -4.1 biotin synthesis protein BioC compare
Psyr_1613 -4.2 -7.0 septum site-determining protein MinC compare
Psyr_1544 -4.1 -4.9 SirA-like protein compare
Psyr_0014 -4.1 -6.7 lipid A biosynthesis acyltransferase compare
Psyr_0951 -4.0 -4.3 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4341 -3.7 -9.4 thiamine-phosphate diphosphorylase compare
Psyr_4687 -3.6 -6.5 biotin synthase compare
Psyr_0849 -3.6 -13.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4340 -3.6 -11.6 phosphomethylpyrimidine kinase, putative compare
Psyr_1751 -3.5 -7.0 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0487 -3.3 -4.5 glutathione synthase compare
Psyr_4194 -3.1 -7.1 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_4686 -3.1 -8.0 8-amino-7-oxononanoate synthase compare
Psyr_4683 -3.0 -4.1 dethiobiotin synthase compare
Psyr_3202 -2.9 -3.8 NADH dehydrogenase subunit G compare
Psyr_0454 -2.9 -5.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0259 -2.8 -5.3 Osmolarity sensor protein envZ compare
Psyr_1556 -2.8 -2.9 hypothetical protein compare
Psyr_5135 -2.8 -2.1 Protein of unknown function DUF37 compare
Psyr_4627 -2.7 -3.4 dimethyladenosine transferase compare
Psyr_3008 -2.7 -6.4 Undecaprenyl-diphosphatase compare
Psyr_2471 -2.6 -2.9 hydroxymethylglutaryl-CoA lyase compare
Psyr_0383 -2.5 -2.3 Twin-arginine translocation protein TatB compare
Psyr_0215 -2.4 -8.9 Exodeoxyribonuclease III xth compare
Psyr_4091 -2.4 -3.9 8-oxo-dGTPase compare
Psyr_0565 -2.3 -5.6 Protein of unknown function UPF0126 compare
Psyr_2112 -2.3 -3.5 Protein with unknown function DUF469 compare
Psyr_4203 -2.3 -1.5 SsrA-binding protein compare
Psyr_0531 -2.2 -2.3 LmbE-like protein compare
Psyr_0475 -2.2 -3.8 Protein of unknown function YGGT compare
Psyr_2980 -2.1 -5.1 UDP-glucose pyrophosphorylase compare
Psyr_1907 -2.1 -4.0 GTP cyclohydrolase I compare
Psyr_0535 -2.1 -3.4 toluene tolerance protein, putative compare
Psyr_1373 -1.9 -3.2 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3193 -1.9 -3.1 Transcription factor jumonji, jmjC compare
Psyr_3287 -1.9 -3.5 DNA topoisomerase I compare
Psyr_4622 -1.8 -4.3 Nucleotidyl transferase compare
Psyr_0826 -1.8 -5.7 glucose-6-phosphate isomerase compare
Psyr_0574 -1.8 -5.6 protease FtsH subunit HflK compare
Psyr_2095 -1.8 -4.6 Conserved TM helix compare
Psyr_3013 -1.8 -1.4 magnesium chelatase subunit ChlD compare
Psyr_1885 -1.7 -2.5 hypothetical protein compare
Psyr_2347 -1.7 -2.8 hypothetical protein compare
Psyr_3090 -1.7 -3.8 hypothetical protein compare
Psyr_0918 -1.6 -8.1 ABC transporter compare
Psyr_0917 -1.6 -6.7 ABC-2 compare
Psyr_2346 -1.5 -4.0 conserved hypothetical protein compare
Psyr_3808 -1.5 -1.8 hypothetical protein compare
Psyr_2823 -1.5 -1.7 hypothetical protein compare
Psyr_3459 -1.5 -1.8 Helix-turn-helix, Fis-type compare
Psyr_5132 -1.4 -2.0 Glucose-inhibited division protein A subfamily compare
Psyr_0524 -1.4 -2.4 Lipopolysaccharide kinase compare
Psyr_3954 -1.4 -3.9 GTP-binding protein LepA compare
Psyr_0255 -1.4 -2.5 glutamate-cysteine ligase compare
Psyr_4015 -1.4 -2.5 conserved domain protein compare
Psyr_3199 -1.4 -3.1 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_1378 -1.4 -2.2 RecA protein compare
Psyr_4143 -1.4 -1.7 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_1935 -1.4 -4.6 Protein of unknown function DUF796 compare
Psyr_4991 -1.4 -2.6 hypothetical protein compare
Psyr_0549 -1.4 -1.8 Metallophosphoesterase compare
Psyr_1930 -1.4 -2.2 hypothetical protein compare
Psyr_3208 -1.4 -2.3 NADH dehydrogenase subunit M compare
Psyr_3341 -1.3 -3.0 hypothetical protein compare
Psyr_3290 -1.3 -3.2 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_2642 -1.3 -3.8 hypothetical protein compare
Psyr_1268 -1.3 -5.3 extracellular solute-binding protein, family 3:SLT compare
Psyr_3142 -1.3 -2.9 general secretion pathway protein N, putative compare
Psyr_3281 -1.3 -1.8 Glycoside hydrolase, family 3, N-terminal compare
Psyr_0464 -1.3 -1.7 hypothetical protein compare
Psyr_3854 -1.3 -1.2 OmpA/MotB compare
Psyr_1419 -1.3 -2.8 preQ(0) biosynthesis protein QueC compare
Psyr_3040 -1.2 -3.8 conserved hypothetical protein compare
Psyr_3807 -1.2 -4.4 hypothetical protein compare
Psyr_0831 -1.2 -2.2 Two-component response regulator CbrB compare
Psyr_0835 -1.2 -4.7 transcriptional regulator, TraR/DksA family compare
Psyr_0580 -1.2 -2.1 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_2641 -1.2 -2.4 hypothetical protein compare
Psyr_1748 -1.2 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0034 -1.2 -4.0 tryptophan synthase, beta chain compare
Psyr_0579 -1.2 -6.8 RNAse R compare
Psyr_2824 -1.2 -4.6 conserved hypothetical protein compare
Psyr_2345 -1.2 -4.0 ea59 protein compare
Psyr_1555 -1.2 -2.8 Cobyrinic acid a,c-diamide synthase compare
Psyr_0377 -1.2 -4.9 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_2594 -1.2 -1.5 unknown conserved protein in bacilli compare
Psyr_RNA61 -1.2 -2.5 tRNA-Gly compare
Psyr_1975 -1.2 -2.3 Integrase, catalytic region compare
Psyr_1097 -1.1 -1.7 glycine cleavage system H protein compare
Psyr_1410 -1.1 -2.6 Holliday junction DNA helicase RuvB compare
Psyr_2398 -1.1 -1.8 ABC transporter compare
Psyr_2848 -1.1 -3.6 hypothetical protein compare
Psyr_0575 -1.1 -2.2 protease FtsH subunit HflC compare
Psyr_2842 -1.1 -4.7 hypothetical protein compare
Psyr_2428 -1.1 -3.6 GCN5-related N-acetyltransferase compare
Psyr_2251 -1.1 -1.5 Phosphonate metabolism PhnG compare
Psyr_3684 -1.1 -1.9 NLP/P60 compare
Psyr_0378 -1.1 -5.2 Glycosyl transferase, family 2 compare
Psyr_2854 -1.1 -2.5 conserved hypothetical protein compare
Psyr_3755 -1.1 -2.0 conserved hypothetical protein compare
Psyr_3952 -1.1 -2.9 conserved hypothetical protein compare
Psyr_1418 -1.1 -2.1 Radical SAM compare
Psyr_1667 -1.0 -3.2 Colicin V production protein compare
Psyr_4316 -1.0 -3.0 conserved hypothetical protein compare
Psyr_4581 -1.0 -1.7 anthranilate synthase, component II compare
Psyr_2253 -1.0 -1.9 Phosphonate metabolism compare
Psyr_0447 -1.0 -1.8 malonate decarboxylase subunit, putative compare
Psyr_0576 -1.0 -2.5 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_0044 -1.0 -1.3 transferase hexapeptide repeat protein compare
Psyr_3121 -1.0 -1.7 Protein of unknown function DUF1345 compare
Psyr_2245 -1.0 -1.6 conserved domain protein compare
Psyr_3581 -1.0 -3.3 ribosomal large subunit pseudouridine synthase B compare
Psyr_0528 -1.0 -1.7 Carbamoyltransferase compare
Psyr_1009 -1.0 -3.2 Peptidylprolyl isomerase, FKBP-type compare
Psyr_1931 -1.0 -3.7 hypothetical protein compare
Psyr_4634 -1.0 -1.4 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_1350 -1.0 -2.3 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_4093 -1.0 -3.1 glutamate N-acetyltransferase compare
Psyr_4408 -1.0 -4.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_1371 -1.0 -4.0 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_1458 -1.0 -3.3 hypothetical protein compare
Psyr_2982 -1.0 -2.6 conserved hypothetical protein compare
Psyr_0184 -1.0 -2.3 Protein of unknown function DUF484 compare
Psyr_4362 -0.9 -1.8 Rare lipoprotein A compare
Psyr_3213 -0.9 -2.1 Propeptide, PepSY amd peptidase M4 compare
Psyr_3680 -0.9 -2.3 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_3152 -0.9 -1.1 hypothetical protein compare
Psyr_0838 -0.9 -1.3 Rieske [2Fe-2S] region compare
Psyr_2348 -0.9 -1.3 hypothetical protein compare
Psyr_3107 -0.9 -2.0 conserved hypothetical protein compare
Psyr_4491 -0.9 -1.5 Deoxyribose-phosphate aldolase compare
Psyr_4673 -0.9 -1.2 Coenzyme PQQ synthesis D compare
Psyr_4519 -0.9 -4.2 General substrate transporter:Major facilitator superfamily compare
Psyr_4893 -0.9 -1.4 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0571 -0.9 -2.2 tRNA isopentenyltransferase compare
Psyr_2639 -0.9 -3.9 hypothetical protein compare
Psyr_1783 -0.9 -1.1 CDS compare
Psyr_1235 -0.9 -3.1 serine O-acetyltransferase compare
Psyr_2227 -0.9 -1.3 conserved hypothetical protein compare
Psyr_4845 -0.9 -1.3 conserved hypothetical protein compare
Psyr_0202 -0.9 -4.0 transcriptional regulator, LysR family compare
Psyr_0033 -0.9 -1.8 tryptophan synthase, alpha chain compare
Psyr_3179 -0.9 -2.0 DNA translocase FtsK compare
Psyr_4019 -0.8 -1.5 H-NS family protein MvaT compare
Psyr_1929 -0.8 -2.7 hypothetical protein compare
Psyr_2508 -0.8 -1.5 transcriptional regulator, IclR family compare
Psyr_4136 -0.8 -1.6 BolA-like protein compare
Psyr_0053 -0.8 -2.1 conserved hypothetical protein compare
Psyr_3806 -0.8 -2.2 hypothetical protein compare
Psyr_1019 -0.8 -3.4 Dihydroneopterin aldolase compare
Psyr_2488 -0.8 -2.0 hypothetical protein compare
Psyr_1487 -0.8 -2.3 conserved hypothetical protein compare
Psyr_2084 -0.8 -2.2 transcriptional regulator, GntR family compare
Psyr_0567 -0.8 -2.7 Protein of unknown function UPF0031:YjeF-related protein, N-terminal compare
Psyr_0863 -0.8 -2.6 PhnA protein compare
Psyr_4884 -0.8 -3.0 Rhodanese-like protein compare
Psyr_2664 -0.8 -3.6 hypothetical protein compare
Psyr_2941 -0.8 -2.2 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_0235 -0.8 -3.2 D-amino acid dehydrogenase small subunit compare
Psyr_1774 -0.8 -2.2 Mg2+ transporter protein, CorA-like protein compare
Psyr_3841 -0.8 -1.3 conserved hypothetical protein compare
Psyr_1108 -0.8 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_3720 -0.8 -3.9 Filamentation induced by cAMP protein Fic compare
Psyr_2602 -0.8 -3.6 transcriptional regulator, LuxR family compare
Psyr_2844 -0.8 -2.2 hypothetical protein compare
Psyr_2071 -0.8 -0.9 outer membrane lipoprotein OprI compare
Psyr_2897 -0.8 -3.2 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0845 -0.8 -1.6 conserved hypothetical protein compare
Psyr_4804 -0.8 -2.0 conserved hypothetical protein compare
Psyr_2387 -0.8 -2.5 Malate:quinone-oxidoreductase compare
Psyr_2182 -0.8 -2.4 hypothetical protein compare
Psyr_1588 -0.8 -2.0 Putative exonuclease, RdgC compare
Psyr_4476 -0.8 -3.0 dTDP-4-dehydrorhamnose reductase compare
Psyr_1887 -0.8 -1.7 CDS compare
Psyr_2595 -0.8 -2.4 Dimethylmenaquinone methyltransferase compare
Psyr_0356 -0.8 -0.6 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_1616 -0.7 -1.6 Rieske [2Fe-2S] region compare
Psyr_4582 -0.7 -0.9 hypothetical protein compare
Psyr_1127 -0.7 -1.4 Heavy metal response regulator compare
Psyr_1251 -0.7 -2.4 quinoprotein compare
Psyr_3904 -0.7 -3.3 Major intrinsic protein compare
Psyr_3465 -0.7 -3.1 Flagellar protein FlaG protein compare
Psyr_2433 -0.7 -1.9 conserved hypothetical protein compare
Psyr_2461 -0.7 -1.4 Uncharacterized conserved protein UCP030820 compare
Psyr_2087 -0.7 -2.9 aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming) compare
Psyr_1225 -0.7 -2.4 hypothetical protein compare
Psyr_2320 -0.7 -3.7 YD repeat protein compare
Psyr_4593 -0.7 -1.9 sigma factor domain protein compare
Psyr_1864 -0.7 -2.6 spermidine synthase compare
Psyr_4424 -0.7 -3.0 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_4822 -0.7 -1.1 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_0832 -0.7 -3.5 Two-component sensor kinase CbrA compare
Psyr_3164 -0.7 -3.2 Protein of unknown function UPF0005 compare
Psyr_3443 -0.7 -2.5 Flagellar biosynthesis protein FliQ compare
Psyr_3882 -0.7 -0.8 conserved hypothetical protein compare
Psyr_1736 -0.7 -2.1 Helix-turn-helix, Fis-type compare
Psyr_2184 -0.7 -1.8 Short-chain dehydrogenase/reductase SDR compare
Psyr_4350 -0.7 -1.6 Protein of unknown function DUF218 compare
Psyr_4029 -0.7 -2.7 pyruvate kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Methanol across organisms