Experiment set12IT026 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Methanol 5 vol%

200 most detrimental genes:

  gene name fitness t score description  
Psyr_2807 +1.6 2.5 NinB compare
Psyr_2757 +1.6 2.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4860 +1.4 2.0 Integrase, catalytic region compare
Psyr_2752 +1.3 3.0 conserved hypothetical protein compare
Psyr_4151 +1.1 1.3 Phosphocarrier HPr protein compare
Psyr_3932 +1.0 1.5 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_2717 +1.0 2.6 Antibiotic biosynthesis monooxygenase compare
Psyr_3702 +1.0 2.8 Arsenate reductase compare
Psyr_3837 +1.0 1.8 conserved hypothetical protein compare
Psyr_4087 +1.0 1.6 Protein of unknown function DUF520 compare
Psyr_4487 +1.0 2.3 Carbohydrate kinase, PfkB compare
Psyr_2200 +0.9 2.3 UreE urease accessory, N-terminal compare
Psyr_3779 +0.9 3.0 GCN5-related N-acetyltransferase compare
Psyr_4169 +0.9 2.6 4-carboxymuconolactone decarboxylase compare
Psyr_0736 +0.9 2.5 umuC protein compare
Psyr_2774 +0.9 2.0 Bacteriophage lambda tail assembly I compare
Psyr_3675 +0.9 1.7 adenosylcobinamide kinase compare
Psyr_2497 +0.9 1.5 lipoprotein, putative compare
Psyr_1130 +0.9 2.0 conserved hypothetical protein compare
Psyr_2563 +0.8 2.2 HAD-superfamily hydrolase, subfamily IIA compare
Psyr_2395 +0.8 2.6 transcriptional regulator, LysR family compare
Psyr_3432 +0.8 2.2 MotA/TolQ/ExbB proton channel compare
Psyr_4043 +0.8 2.3 hypothetical protein compare
Psyr_4050 +0.8 2.1 Protein of unknown function DUF479 compare
Psyr_2420 +0.8 2.7 conserved hypothetical protein compare
Psyr_0724 +0.8 2.2 conserved hypothetical protein compare
Psyr_3611 +0.8 2.7 Protein of unknown function DUF815 compare
Psyr_3701 +0.8 1.6 thioredoxin, putative compare
Psyr_4601 +0.8 2.0 hypothetical protein compare
Psyr_3848 +0.8 3.5 L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein compare
Psyr_4418 +0.8 1.6 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_2275 +0.8 1.5 glutamate synthase (NADPH) GltB3 subunit compare
Psyr_3554 +0.8 0.7 Carbon storage regulator compare
Psyr_4596 +0.8 2.1 conserved hypothetical protein compare
Psyr_2243 +0.8 2.1 Endoribonuclease L-PSP compare
Psyr_2806 +0.8 3.2 Bacteriophage Lambda NinG compare
Psyr_1123 +0.8 2.3 conserved hypothetical protein compare
Psyr_2247 +0.8 2.3 ABC transporter compare
Psyr_2202 +0.7 1.4 ABC transporter compare
Psyr_1314 +0.7 2.5 lipoprotein, putative compare
Psyr_4335 +0.7 1.2 transcriptional regulator, AsnC family compare
Psyr_2745 +0.7 3.3 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit:Ornithine cyclodeaminase/mu-crystallin compare
Psyr_2868 +0.7 2.1 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0510 +0.7 2.1 conserved hypothetical protein compare
Psyr_0444 +0.7 0.9 Malonate decarboxylase delta subunit compare
Psyr_1820 +0.7 2.7 conserved hypothetical protein compare
Psyr_2890 +0.7 2.6 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_0470 +0.7 2.6 conserved hypothetical protein compare
Psyr_4262 +0.7 1.1 lipoprotein, putative compare
Psyr_2123 +0.7 2.3 protocatechuate 3,4-dioxygenase, alpha subunit compare
Psyr_2228 +0.7 2.7 conserved hypothetical protein compare
Psyr_2851 +0.7 1.1 conserved hypothetical protein compare
Psyr_3184 +0.7 2.1 ATP-dependent Clp protease adaptor protein ClpS compare
Psyr_2984 +0.7 1.2 conserved hypothetical protein compare
Psyr_3293 +0.7 1.1 UspA compare
Psyr_4044 +0.7 2.1 Phospholipase D/Transphosphatidylase compare
Psyr_3482 +0.7 2.9 Protein of unknown function DUF1348 compare
Psyr_0087 +0.7 2.7 Fatty acid desaturase compare
Psyr_0885 +0.7 1.1 conserved hypothetical protein compare
Psyr_2553 +0.7 1.7 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases-related enzyme compare
Psyr_0231 +0.7 1.9 conserved hypothetical protein compare
Psyr_2969 +0.7 3.2 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3315 +0.7 1.4 conserved hypothetical protein compare
Psyr_1999 +0.7 1.8 OmpA/MotB compare
Psyr_2973 +0.7 1.6 Glyoxalase I compare
Psyr_3681 +0.7 1.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_2085 +0.7 2.7 methylisocitrate lyase compare
Psyr_0635 +0.6 1.4 MaoC-like dehydratase compare
Psyr_0349 +0.6 2.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0981 +0.6 1.7 conserved hypothetical protein compare
Psyr_2337 +0.6 1.3 conserved hypothetical protein compare
Psyr_4480 +0.6 1.2 outer membrane transport energization protein TonB compare
Psyr_3753 +0.6 3.0 Short-chain dehydrogenase/reductase SDR compare
Psyr_0550 +0.6 1.6 Protein of unknown function UPF0227 compare
Psyr_2350 +0.6 1.3 Protein of unknown function UPF0025 compare
Psyr_2537 +0.6 1.4 conserved hypothetical protein compare
Psyr_0781 +0.6 1.4 Protein-glutamate methylesterase compare
Psyr_1796 +0.6 1.6 GCN5-related N-acetyltransferase compare
Psyr_2264 +0.6 0.8 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4296 +0.6 2.8 HI0933-like protein compare
Psyr_0270 +0.6 2.1 DNA polymerase I compare
Psyr_3458 +0.6 0.9 Flagellar hook-basal body complex protein FliE compare
Psyr_0622 +0.6 1.4 transcriptional regulator, XRE family compare
Psyr_4576 +0.6 2.0 OsmC-like protein compare
Psyr_2255 +0.6 1.0 ABC transporter compare
Psyr_4336 +0.6 1.7 ribosomal large subunit pseudouridine synthase E compare
Psyr_3618 +0.6 1.5 Catalytic LigB subunit of aromatic ring-opening dioxygenase compare
Psyr_4880 +0.6 2.4 conserved hypothetical protein compare
Psyr_1645 +0.6 1.4 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_3974 +0.6 2.0 ABC transporter compare
Psyr_2266 +0.6 1.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2435 +0.6 2.1 Xylulokinase compare
Psyr_1039 +0.6 1.3 FecR protein compare
Psyr_0899 +0.6 3.1 Tripartite ATP-independent periplasmic transporter, DctQ component compare
Psyr_0746 +0.6 1.4 IS66 Orf2 like protein compare
Psyr_1274 +0.6 1.6 transferase hexapeptide repeat protein compare
Psyr_3357 +0.6 1.4 transcriptional regulator, LysR family compare
Psyr_0282 +0.5 2.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1850 +0.5 1.8 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase compare
Psyr_2190 +0.5 1.1 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_2621 +0.5 2.1 Secretion protein HlyD compare
Psyr_1987 +0.5 1.2 2-keto-3-deoxygalactonate kinase compare
Psyr_0844 +0.5 1.9 Protein of unknown function DUF446 compare
Psyr_4252 +0.5 3.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4330 +0.5 2.0 conserved domain protein compare
Psyr_2877 +0.5 1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_3358 +0.5 0.9 transmembrane pair compare
Psyr_3195 +0.5 2.0 NolW-like protein compare
Psyr_2885 +0.5 2.8 xylose ABC transporter ATP-binding protein compare
Psyr_5052 +0.5 4.4 Sodium:alanine symporter compare
Psyr_3104 +0.5 1.3 phosphate ABC transporter membrane protein 2, PhoT family compare
Psyr_1903 +0.5 1.0 conserved hypothetical protein compare
Psyr_2074 +0.5 2.4 ketopantoate reductase compare
Psyr_2088 +0.5 0.8 2-methylaconitate cis-trans isomerase compare
Psyr_3757 +0.5 3.3 Protein of unknown function DUF485 compare
Psyr_2067 +0.5 1.1 ABC transporter compare
Psyr_4811 +0.5 2.0 transcriptional regulator, AraC family compare
Psyr_3906 +0.5 1.0 regulatory protein, DeoR compare
Psyr_1273 +0.5 1.6 NUDIX hydrolase compare
Psyr_4140 +0.5 0.9 Protein of unknown function DUF140 compare
Psyr_4294 +0.5 1.3 Histone deacetylase family protein compare
Psyr_2840 +0.5 1.4 hypothetical protein compare
Psyr_2480 +0.5 1.9 transcriptional regulator, LysR family compare
Psyr_3234 +0.5 2.1 Lysine exporter protein (LYSE/YGGA) compare
Psyr_2588 +0.5 1.4 HpcH/HpaI aldolase compare
Psyr_3857 +0.5 1.1 conserved hypothetical protein compare
Psyr_2870 +0.5 1.2 CDS compare
Psyr_3795 +0.5 1.2 hypothetical protein compare
Psyr_4153 +0.5 1.7 conserved hypothetical protein compare
Psyr_1587 +0.5 2.0 Bile acid:sodium symporter compare
Psyr_1316 +0.5 2.7 OmpA/MotB compare
Psyr_2781 +0.5 1.0 hypothetical protein compare
Psyr_2221 +0.5 0.8 sarcosine oxidase, gamma subunit compare
Psyr_1570 +0.5 2.3 Copper resistance B precursor compare
Psyr_4809 +0.5 2.6 conserved hypothetical protein compare
Psyr_0793 +0.5 1.9 conserved hypothetical protein compare
Psyr_3712 +0.5 2.0 conserved hypothetical protein compare
Psyr_1017 +0.5 1.0 type III effector HopJ1 compare
Psyr_2908 +0.5 2.4 Phosphoglucomutase, alpha-D-glucose phosphate-specific compare
Psyr_4580 +0.5 1.4 anthranilate phosphoribosyltransferase compare
Psyr_2581 +0.5 1.5 FecR protein compare
Psyr_2529 +0.5 2.2 Amidohydrolase compare
Psyr_0923 +0.5 1.9 hypothetical protein compare
Psyr_2765 +0.5 1.1 conserved domain protein compare
Psyr_1087 +0.5 1.4 CDS compare
Psyr_1992 +0.5 1.1 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_3835 +0.5 1.4 hypothetical protein compare
Psyr_1546 +0.5 1.4 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen compare
Psyr_2208 +0.5 2.2 Amidase compare
Psyr_1496 +0.5 3.1 Copper resistance D compare
Psyr_3872 +0.5 2.6 conserved hypothetical protein compare
Psyr_1069 +0.5 1.5 molybdopterin synthase subunit MoaE compare
Psyr_1993 +0.5 1.6 transcriptional regulator, AraC family compare
Psyr_2344 +0.5 1.4 CDS compare
Psyr_1185 +0.5 1.5 type III chaperone protein ShcM compare
Psyr_2117 +0.5 1.3 conserved hypothetical protein compare
Psyr_0425 +0.5 1.1 Beta-ketoacyl synthase:Beta-ketoacyl synthase compare
Psyr_3777 +0.5 1.8 conserved hypothetical protein compare
Psyr_2134 +0.5 0.7 protein of unknown function DUF903 compare
Psyr_3280 +0.5 1.2 methylthioadenosine phosphorylase compare
Psyr_2637 +0.5 1.8 FAD dependent oxidoreductase compare
Psyr_2567 +0.5 2.4 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_1740 +0.5 2.1 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
Psyr_4301 +0.5 1.8 Protein of unknown function DUF88 compare
Psyr_2521 +0.5 1.8 conserved hypothetical protein compare
Psyr_1424 +0.5 0.7 Peptidase S24, S26A and S26B compare
Psyr_3103 +0.5 1.6 phosphate ABC transporter ATP-binding protein, PhoT family compare
Psyr_3377 +0.5 1.0 transcriptional regulator, MarR family compare
Psyr_2311 +0.5 1.5 conserved hypothetical protein compare
Psyr_4772 +0.5 1.8 Protein of unknown function DUF519 compare
Psyr_4793 +0.5 2.2 transcriptional regulator, ArsR family compare
Psyr_0884 +0.5 2.1 conserved hypothetical protein compare
Psyr_4710 +0.5 2.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2318 +0.5 1.2 CDS compare
Psyr_1389 +0.4 1.1 Protein of unknown function DUF1456 compare
Psyr_4658 +0.4 0.7 CDS compare
Psyr_2054 +0.4 1.5 Protein of unknown function DUF58 compare
Psyr_3767 +0.4 2.0 regulatory protein, LuxR compare
Psyr_1775 +0.4 1.5 Aldo/keto reductase compare
Psyr_1595 +0.4 1.8 Protein of unknown function DUF1232 compare
Psyr_2057 +0.4 1.4 acyl-CoA thioesterase II, putative compare
Psyr_4945 +0.4 1.8 Formate dehydrogenase, subunit FdhD compare
Psyr_3747 +0.4 1.9 asparagine synthase (glutamine-hydrolysing) compare
Psyr_3703 +0.4 1.1 Flavodoxin/nitric oxide synthase compare
Psyr_3578 +0.4 1.8 Major facilitator superfamily compare
Psyr_1407 +0.4 1.4 Protein of unknown function DUF28 compare
Psyr_1621 +0.4 1.5 Autoinducer synthesis protein compare
Psyr_1845 +0.4 1.8 GTP cyclohydrolase I compare
Psyr_0699 +0.4 1.9 CDS compare
Psyr_0347 +0.4 1.2 hypothetical protein compare
Psyr_3323 +0.4 1.5 conserved hypothetical protein compare
Psyr_3571 +0.4 1.6 L-arginine-binding protein / L-ornithine-binding protein compare
Psyr_4051 +0.4 0.7 transcriptional regulator, ArsR family compare
Psyr_4671 +0.4 1.1 coenzyme PQQ synthesis protein B compare
Psyr_0511 +0.4 1.6 conserved hypothetical protein compare
Psyr_3624 +0.4 1.5 transcriptional regulator, LysR family compare
Psyr_2618 +0.4 1.3 ABC transporter:Protein of unknown function DUF214 compare
Psyr_3760 +0.4 2.1 VacJ-like lipoprotein compare
Psyr_2211 +0.4 1.0 monooxygenase, NtaA/SnaA/SoxA family compare
Psyr_2921 +0.4 0.8 ADP-ribosylglycohydrolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Methanol across organisms