Experiment set12IT025 for Burkholderia phytofirmans PsJN

Compare to:

Disodium Glutarate carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -7.3 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS16835 -7.3 -7.1 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17685 -6.3 -9.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS18320 -6.3 -12.4 orotate phosphoribosyltransferase compare
BPHYT_RS04955 -6.2 -2.2 methionyl-tRNA synthetase compare
BPHYT_RS09500 -6.1 -6.9 glucose-6-phosphate isomerase compare
BPHYT_RS16245 -5.8 -8.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS15915 -5.7 -9.6 ornithine carbamoyltransferase compare
BPHYT_RS33915 -5.7 -9.4 isopropylmalate isomerase compare
BPHYT_RS33900 -5.6 -13.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS17855 -5.6 -16.8 glutamate synthase compare
BPHYT_RS33835 -5.5 -9.5 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS02590 -5.4 -9.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS15920 -5.4 -11.3 argininosuccinate synthase compare
BPHYT_RS17890 -5.2 -3.1 shikimate kinase compare
BPHYT_RS33875 -5.2 -10.6 tryptophan synthase subunit alpha compare
BPHYT_RS09515 -5.2 -6.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS03780 -5.1 -7.0 acyl-CoA dehydrogenase compare
BPHYT_RS03640 -5.1 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS01595 -5.1 -10.4 homoserine O-acetyltransferase compare
BPHYT_RS13705 -5.1 -6.0 chorismate synthase compare
BPHYT_RS02610 -5.0 -4.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS06555 -5.0 -10.1 ketol-acid reductoisomerase compare
BPHYT_RS16270 -5.0 -4.8 phosphoglycerate kinase compare
BPHYT_RS14190 -5.0 -11.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS03150 -4.9 -11.3 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33880 -4.9 -8.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17670 -4.9 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS06545 -4.8 -11.1 acetolactate synthase compare
BPHYT_RS17885 -4.7 -6.5 3-dehydroquinate synthase compare
BPHYT_RS06900 -4.7 -7.8 aspartate aminotransferase compare
BPHYT_RS16255 -4.7 -3.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16340 -4.6 -6.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS14895 -4.5 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33840 -4.5 -9.2 amidophosphoribosyltransferase compare
BPHYT_RS17675 -4.4 -2.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17400 -4.3 -7.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS17690 -4.3 -12.7 imidazole glycerol phosphate synthase compare
BPHYT_RS12815 -4.3 -7.3 IclR family transcriptional regulator compare
BPHYT_RS12285 -4.2 -6.2 isocitrate lyase compare
BPHYT_RS17390 -4.2 -13.6 anthranilate synthase subunit I compare
BPHYT_RS06530 -4.1 -2.1 membrane protein compare
BPHYT_RS36275 -4.1 -2.9 hypothetical protein compare
BPHYT_RS16675 -4.0 -2.8 dihydroorotase compare
BPHYT_RS14910 -4.0 -10.1 chorismate mutase compare
BPHYT_RS04725 -4.0 -6.5 sulfite reductase compare
BPHYT_RS06405 -4.0 -7.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS08565 -4.0 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS17715 -4.0 -9.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS14865 -3.9 -3.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS12985 -3.9 -3.4 amino acid acetyltransferase compare
BPHYT_RS08955 -3.8 -7.2 homoserine dehydrogenase compare
BPHYT_RS08960 -3.8 -2.2 threonine synthase compare
BPHYT_RS06610 -3.8 -2.6 triosephosphate isomerase compare
BPHYT_RS20305 -3.8 -7.8 hypothetical protein compare
BPHYT_RS15710 -3.7 -3.1 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS16905 -3.7 -3.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS33645 -3.6 -5.4 homoserine kinase compare
BPHYT_RS02570 -3.6 -5.0 phosphocarrier protein HPr compare
BPHYT_RS04965 -3.5 -7.1 ATP-binding protein compare
BPHYT_RS17395 -3.4 -2.9 anthranilate synthase subunit II compare
BPHYT_RS14915 -3.4 -8.6 phosphoserine aminotransferase compare
BPHYT_RS06685 -3.2 -2.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS12530 -3.2 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS12845 -3.1 -15.5 ATPase compare
BPHYT_RS19975 -3.1 -6.1 IclR family transcriptional regulator compare
BPHYT_RS17700 -3.1 -4.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS16345 -3.1 -4.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS08850 -3.0 -2.0 transcriptional regulator compare
BPHYT_RS13985 -2.8 -14.2 CoA transferase compare
BPHYT_RS14900 -2.7 -3.4 prephenate dehydrogenase compare
BPHYT_RS08245 -2.7 -7.4 anti-sigma factor compare
BPHYT_RS22325 -2.6 -2.7 histidine kinase compare
BPHYT_RS17265 -2.6 -1.5 cell division protein compare
BPHYT_RS11175 -2.5 -7.6 alpha-ketoglutarate transporter conserved
BPHYT_RS17380 -2.5 -10.9 ribulose-phosphate 3-epimerase compare
BPHYT_RS14845 -2.4 -1.6 cysteine synthase compare
BPHYT_RS17405 -2.4 -1.4 indole-3-glycerol phosphate synthase compare
BPHYT_RS33865 -2.4 -8.2 tryptophan synthase alpha chain compare
BPHYT_RS35885 -2.3 -5.2 hypothetical protein compare
BPHYT_RS18705 -2.3 -2.0 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS22730 -2.2 -2.6 serine/threonine kinase compare
BPHYT_RS14195 -2.2 -2.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS33905 -2.2 -1.2 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS13220 -2.1 -9.7 phosphomethylpyrimidine synthase compare
BPHYT_RS09480 -2.1 -1.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS33920 -2.1 -7.5 type II citrate synthase compare
BPHYT_RS23230 -2.1 -2.0 histidine kinase compare
BPHYT_RS03725 -2.0 -1.1 serine hydroxymethyltransferase compare
BPHYT_RS01590 -2.0 -8.3 methionine biosynthesis protein MetW compare
BPHYT_RS04730 -1.9 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS29085 -1.8 -2.2 LysR family transcriptional regulator compare
BPHYT_RS36400 -1.8 -1.7 hypothetical protein compare
BPHYT_RS03645 -1.8 -2.2 tRNA dimethylallyltransferase compare
BPHYT_RS16085 -1.7 -4.4 DeoR faimly transcriptional regulator compare
BPHYT_RS16555 -1.7 -3.5 cation transporter compare
BPHYT_RS16840 -1.7 -2.4 transketolase compare
BPHYT_RS01485 -1.7 -1.1 histidine kinase compare
BPHYT_RS29945 -1.6 -2.7 histidine kinase compare
BPHYT_RS28995 -1.6 -5.0 histidine kinase compare
BPHYT_RS02575 -1.6 -10.3 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS12900 -1.6 -2.1 transposase compare
BPHYT_RS06535 -1.6 -1.9 membrane protein compare
BPHYT_RS12590 -1.5 -2.1 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS14370 -1.5 -1.9 ribonuclease III compare
BPHYT_RS15670 -1.5 -4.8 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS01585 -1.4 -6.1 major facilitator superfamily protein compare
BPHYT_RS00815 -1.4 -1.3 hypothetical protein compare
BPHYT_RS03570 -1.4 -6.0 heat-inducible transcription repressor HrcA compare
BPHYT_RS32260 -1.4 -1.4 hypothetical protein compare
BPHYT_RS22360 -1.4 -3.1 response regulator receiver compare
BPHYT_RS03280 -1.4 -1.7 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS08340 -1.4 -0.4 chemotaxis protein CheY compare
BPHYT_RS09315 -1.4 -1.1 chemotaxis protein CheY compare
BPHYT_RS31910 -1.4 -1.4 hypothetical protein compare
BPHYT_RS20070 -1.4 -3.0 hypothetical protein compare
BPHYT_RS10135 -1.4 -1.2 hypothetical protein compare
BPHYT_RS16080 -1.3 -3.2 xylulokinase compare
BPHYT_RS19675 -1.3 -2.3 hypothetical protein compare
BPHYT_RS28360 -1.3 -1.7 carboxymuconolactone decarboxylase compare
BPHYT_RS05650 -1.3 -1.4 hypothetical protein compare
BPHYT_RS28575 -1.3 -1.2 transcriptional regulator compare
BPHYT_RS19555 -1.3 -2.5 glutamine amidotransferase compare
BPHYT_RS11685 -1.3 -1.3 phasin family protein compare
BPHYT_RS25135 -1.2 -2.1 hypothetical protein compare
BPHYT_RS01660 -1.2 -2.8 hypothetical protein compare
BPHYT_RS00310 -1.2 -7.1 hypothetical protein compare
BPHYT_RS34810 -1.2 -3.7 RND transporter compare
BPHYT_RS20545 -1.2 -1.9 hypothetical protein compare
BPHYT_RS05010 -1.2 -3.6 RpiR family transcriptional regulator compare
BPHYT_RS24585 -1.2 -2.0 NUDIX hydrolase compare
BPHYT_RS02285 -1.2 -5.6 cell division protein compare
BPHYT_RS11635 -1.1 -0.8 RNA polymerase subunit sigma-24 compare
BPHYT_RS13605 -1.1 -1.1 tRNA-Pro compare
BPHYT_RS07515 -1.1 -1.9 photosystem reaction center subunit H compare
BPHYT_RS30645 -1.1 -1.0 hypothetical protein compare
BPHYT_RS26775 -1.1 -0.8 chemotaxis protein CheB compare
BPHYT_RS06090 -1.1 -2.9 TetR family transcriptional regulator compare
BPHYT_RS06375 -1.1 -3.8 ribonuclease compare
BPHYT_RS25020 -1.1 -1.7 phospholipid-binding protein compare
BPHYT_RS09195 -1.1 -2.3 hypothetical protein compare
BPHYT_RS05730 -1.1 -2.3 hypothetical protein compare
BPHYT_RS06710 -1.0 -1.1 hypothetical protein compare
BPHYT_RS32200 -1.0 -1.0 lytic transglycosylase compare
BPHYT_RS03215 -1.0 -2.2 TetR family transcriptional regulator compare
BPHYT_RS33370 -1.0 -1.5 LysR family transcriptional regulator compare
BPHYT_RS32525 -1.0 -1.5 hypothetical protein compare
BPHYT_RS13200 -1.0 -1.3 molybdopterin binding oxidoreductase compare
BPHYT_RS29820 -1.0 -2.7 hypothetical protein compare
BPHYT_RS13890 -1.0 -2.4 RpiR family transcriptional regulator compare
BPHYT_RS30610 -1.0 -1.7 major facilitator transporter compare
BPHYT_RS16250 -1.0 -0.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS14400 -1.0 -1.9 anti-sigma factor compare
BPHYT_RS11795 -1.0 -1.2 membrane protein compare
BPHYT_RS10395 -1.0 -2.0 sulfonate ABC transporter compare
BPHYT_RS20725 -1.0 -1.1 histidine kinase compare
BPHYT_RS27230 -1.0 -1.7 hypothetical protein compare
BPHYT_RS01170 -1.0 -1.5 hypothetical protein compare
BPHYT_RS08950 -0.9 -6.8 aminotransferase compare
BPHYT_RS26965 -0.9 -0.9 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS29485 -0.9 -1.4 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS06500 -0.9 -1.9 LOG family protein compare
BPHYT_RS02965 -0.9 -1.5 membrane protein compare
BPHYT_RS09860 -0.9 -0.8 pilus assembly protein PilP compare
BPHYT_RS12925 -0.9 -0.7 exodeoxyribonuclease III compare
BPHYT_RS05175 -0.9 -1.5 hypothetical protein compare
BPHYT_RS21495 -0.9 -0.9 ABC transporter compare
BPHYT_RS12535 -0.9 -0.8 membrane protein compare
BPHYT_RS28540 -0.9 -3.8 amino acid ABC substrate-binding protein compare
BPHYT_RS27760 -0.9 -1.9 ABC transporter compare
BPHYT_RS27125 -0.9 -1.9 hypothetical protein compare
BPHYT_RS07165 -0.9 -1.3 peptide ABC transporter permease compare
BPHYT_RS08060 -0.9 -4.8 ribosome maturation factor RimP compare
BPHYT_RS16225 -0.9 -5.9 D-alanyl-D-alanine carboxypeptidase compare
BPHYT_RS02975 -0.9 -1.5 membrane protein compare
BPHYT_RS09850 -0.9 -1.4 molybdopterin oxidoreductase compare
BPHYT_RS11640 -0.9 -1.1 hypothetical protein compare
BPHYT_RS11140 -0.9 -2.7 major facilitator transporter compare
BPHYT_RS30890 -0.9 -1.1 hypothetical protein compare
BPHYT_RS33690 -0.8 -1.6 molybdate ABC transporter permease compare
BPHYT_RS22865 -0.8 -0.8 ATPase compare
BPHYT_RS14740 -0.8 -6.1 threonine-phosphate decarboxylase compare
BPHYT_RS28705 -0.8 -1.2 IclR family transcriptional regulator compare
BPHYT_RS34920 -0.8 -1.2 IclR family transcriptional regulator compare
BPHYT_RS17490 -0.8 -1.2 haloacid dehalogenase compare
BPHYT_RS08385 -0.8 -1.2 secretion protein compare
BPHYT_RS20595 -0.8 -2.2 hypothetical protein compare
BPHYT_RS29620 -0.8 -0.7 hypothetical protein compare
BPHYT_RS34655 -0.8 -1.4 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS08355 -0.8 -1.3 hypothetical protein compare
BPHYT_RS21025 -0.8 -1.0 cation-binding protein compare
BPHYT_RS14395 -0.8 -4.2 sugar dehydratase compare
BPHYT_RS34235 -0.8 -2.2 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS22940 -0.8 -1.1 pilus assembly protein TadE compare
BPHYT_RS18760 -0.8 -1.7 flagellar biosynthesis protein FliT compare
BPHYT_RS17920 -0.8 -0.6 protein CyaY compare
BPHYT_RS06335 -0.8 -1.0 CopG family transcriptional regulator compare
BPHYT_RS14550 -0.8 -0.8 tRNA-Asn compare
BPHYT_RS09330 -0.8 -5.6 phytoene synthase compare
BPHYT_RS03015 -0.8 -0.8 aldolase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Disodium Glutarate in Burkholderia phytofirmans PsJN

For carbon source Disodium Glutarate across organisms