Experiment set12IT024 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM

200 most important genes:

  gene name fitness t score description  
BWI76_RS20475 -5.0 -6.0 phospholipid-binding lipoprotein MlaA compare
BWI76_RS00965 -4.7 -2.1 acetolactate synthase 2 small subunit compare
BWI76_RS00400 -4.6 -3.1 glutamine synthetase compare
BWI76_RS18140 -4.6 -5.1 zinc ABC transporter permease compare
BWI76_RS18135 -4.5 -6.2 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS23360 -4.4 -5.2 diaminopimelate decarboxylase compare
BWI76_RS25230 -4.2 -8.5 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS17720 -4.0 -1.8 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS18130 -3.9 -4.0 zinc ABC transporter substrate-binding protein compare
BWI76_RS25220 -3.8 -5.7 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS04465 -3.7 -3.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS00345 -3.7 -5.0 protein disulfide oxidoreductase DsbA compare
BWI76_RS24400 -3.7 -7.0 outer membrane channel protein TolC compare
BWI76_RS26570 -3.5 -4.1 anion permease compare
BWI76_RS23920 -3.5 -5.5 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS09755 -3.5 -7.2 phosphoserine transaminase compare
BWI76_RS25225 -3.4 -7.4 ABC transporter permease compare
BWI76_RS20435 -3.3 -2.0 chorismate synthase compare
BWI76_RS04160 -3.3 -7.2 phosphoserine phosphatase compare
BWI76_RS01330 -3.2 -3.6 twin-arginine translocase subunit TatC compare
BWI76_RS04530 -3.2 -2.2 peptidylprolyl isomerase SurA compare
BWI76_RS06775 -3.2 -12.1 multidrug efflux RND transporter permease subunit compare
BWI76_RS04470 -3.2 -10.2 carbamoyl phosphate synthase large subunit compare
BWI76_RS02530 -3.2 -3.0 tRNA dimethylallyltransferase compare
BWI76_RS25215 -3.1 -8.9 phospholipid-binding protein MlaC compare
BWI76_RS19845 -3.0 -7.1 phosphatase compare
BWI76_RS23240 -3.0 -3.5 exonuclease V subunit gamma compare
BWI76_RS20355 -3.0 -3.9 colicin V production protein compare
BWI76_RS27310 -3.0 -11.1 glycosyltransferase compare
BWI76_RS01210 -2.9 -2.0 tyrosine recombinase XerC compare
BWI76_RS18940 -2.9 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS22805 -2.8 -10.6 GTP diphosphokinase compare
BWI76_RS05200 -2.8 -3.8 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS07070 -2.8 -5.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS01610 -2.7 -9.0 phosphoribosylamine--glycine ligase compare
BWI76_RS23480 -2.7 -11.3 EAL domain-containing protein compare
BWI76_RS04510 -2.7 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS23230 -2.7 -3.2 exodeoxyribonuclease V subunit beta compare
BWI76_RS20895 -2.7 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS06780 -2.6 -6.7 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS26455 -2.6 -3.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS07985 -2.6 -1.6 fluoride ion transporter CrcB compare
BWI76_RS18935 -2.5 -9.4 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS09660 -2.5 -1.7 DNA translocase FtsK compare
BWI76_RS01615 -2.5 -9.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS03010 -2.5 -6.6 ornithine carbamoyltransferase compare
BWI76_RS04305 -2.5 -1.6 molecular chaperone DnaJ compare
BWI76_RS00855 -2.4 -7.1 argininosuccinate lyase compare
BWI76_RS00850 -2.3 -7.4 acetylglutamate kinase compare
BWI76_RS09760 -2.3 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS05835 -2.3 -2.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS26460 -2.3 -6.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS00845 -2.3 -8.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS05260 -2.3 -2.7 chaperone compare
BWI76_RS21265 -2.2 -12.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS25115 -2.2 -7.1 argininosuccinate synthase compare
BWI76_RS04255 -2.2 -8.1 threonine synthase compare
BWI76_RS20350 -2.2 -5.3 amidophosphoribosyltransferase compare
BWI76_RS18950 -2.1 -5.2 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS00805 -2.1 -4.3 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS05015 -2.0 -3.6 transcriptional regulator compare
BWI76_RS08385 -2.0 -2.4 citrate (Si)-synthase compare
BWI76_RS11840 -2.0 -3.5 tryptophan synthase subunit alpha compare
BWI76_RS23220 -2.0 -6.2 amino-acid N-acetyltransferase compare
BWI76_RS05840 -2.0 -4.9 glutamate 5-kinase compare
BWI76_RS20965 -2.0 -2.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS04250 -1.9 -6.0 homoserine kinase compare
BWI76_RS00835 -1.9 -10.0 phosphoenolpyruvate carboxylase compare
BWI76_RS00970 -1.9 -5.8 branched chain amino acid aminotransferase compare
BWI76_RS21580 -1.8 -2.5 SsrA-binding protein compare
BWI76_RS15850 -1.8 -2.8 DUF1317 domain-containing protein compare
BWI76_RS18930 -1.8 -3.8 histidinol-phosphate transaminase compare
BWI76_RS20650 -1.8 -2.4 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS00940 -1.8 -4.0 transcriptional regulator HdfR compare
BWI76_RS18955 -1.7 -3.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS00975 -1.7 -8.2 dihydroxy-acid dehydratase compare
BWI76_RS04240 -1.7 -3.1 thr operon leader peptide compare
BWI76_RS20230 -1.7 -1.5 hypothetical protein compare
BWI76_RS06770 -1.7 -9.1 Hha toxicity attenuator compare
BWI76_RS06765 -1.7 -2.0 transcriptional regulator compare
BWI76_RS08530 -1.7 -2.4 protein TolA compare
BWI76_RS04665 -1.6 -11.1 3-isopropylmalate dehydratase small subunit compare
BWI76_RS24930 -1.6 -6.4 osmotically-inducible protein OsmY compare
BWI76_RS04670 -1.6 -7.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS00960 -1.6 -6.5 acetolactate synthase 2 catalytic subunit compare
BWI76_RS21310 -1.6 -1.2 DNA repair protein RecO compare
BWI76_RS11845 -1.6 -2.5 tryptophan synthase subunit beta compare
BWI76_RS04645 -1.6 -6.2 3-dehydroquinase compare
BWI76_RS01585 -1.6 -4.2 transcriptional regulator compare
BWI76_RS04685 -1.6 -6.0 putative leucine operon leader peptide compare
BWI76_RS00355 -1.6 -2.5 DNA polymerase I compare
BWI76_RS04245 -1.6 -9.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00240 -1.5 -3.4 FMN-binding protein MioC compare
BWI76_RS04675 -1.5 -6.2 3-isopropylmalate dehydrogenase compare
BWI76_RS23265 -1.5 -3.6 hypothetical protein compare
BWI76_RS21475 -1.5 -4.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS17975 -1.5 -2.7 tail-specific protease compare
BWI76_RS26200 -1.5 -6.0 starch synthase compare
BWI76_RS26665 -1.5 -3.2 DNA-binding response regulator compare
BWI76_RS04680 -1.5 -8.2 2-isopropylmalate synthase compare
BWI76_RS26670 -1.5 -5.7 two-component sensor histidine kinase compare
BWI76_RS18925 -1.5 -4.5 histidinol dehydrogenase compare
BWI76_RS08500 -1.5 -1.8 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS19840 -1.4 -1.6 hypothetical protein compare
BWI76_RS14970 -1.4 -2.0 pyrroline-5-carboxylate reductase compare
BWI76_RS27305 -1.4 -5.2 glycosyl transferase compare
BWI76_RS04715 -1.4 -1.1 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS16975 -1.4 -3.2 cysteine desufuration protein SufE compare
BWI76_RS18920 -1.4 -2.7 ATP phosphoribosyltransferase compare
BWI76_RS11275 -1.4 -5.4 sensor protein PhoQ compare
BWI76_RS18190 -1.4 -3.8 carboxy-S-adenosyl-L-methionine synthase CmoA compare
BWI76_RS11850 -1.3 -6.5 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS21810 -1.3 -1.4 universal stress protein compare
BWI76_RS21350 -1.3 -1.8 anti-RNA polymerase sigma factor SigE compare
BWI76_RS17945 -1.3 -1.7 hypothetical protein compare
BWI76_RS00990 -1.3 -7.2 ketol-acid reductoisomerase compare
BWI76_RS15290 -1.3 -1.5 transcriptional regulator compare
BWI76_RS09645 -1.3 -1.1 thioredoxin-disulfide reductase compare
BWI76_RS04515 -1.3 -1.7 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS26000 -1.2 -5.0 aspartate aminotransferase family protein compare
BWI76_RS26485 -1.2 -7.4 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
BWI76_RS26465 -1.2 -7.8 4-amino-4-deoxy-L-arabinose lipid A transferase compare
BWI76_RS13125 -1.2 -3.0 3-hydroxyacyl-CoA dehydrogenase compare
BWI76_RS11855 -1.2 -3.8 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS24885 -1.2 -1.0 PTS galactitol transporter subunit IIB compare
BWI76_RS21465 -1.2 -3.6 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS16980 -1.2 -4.2 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS16895 -1.2 -1.9 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS00440 -1.2 -1.6 CopG family transcriptional regulator compare
BWI76_RS18715 -1.2 -4.4 hypothetical protein compare
BWI76_RS18710 -1.2 -7.4 GGDEF-domain containing protein compare
BWI76_RS06530 -1.2 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS27275 -1.2 -5.3 hypothetical protein compare
BWI76_RS01200 -1.2 -1.1 diaminopimelate epimerase compare
BWI76_RS17155 -1.2 -1.9 hypothetical protein compare
BWI76_RS17980 -1.2 -2.4 RNA chaperone ProQ compare
BWI76_RS24900 -1.1 -1.8 DeoR family transcriptional regulator compare
BWI76_RS25335 -1.1 -3.2 stringent starvation protein A compare
BWI76_RS08525 -1.1 -2.0 colicin transporter compare
BWI76_RS06240 -1.1 -4.3 branched-chain amino acid transport system 2 carrier protein BrnQ compare
BWI76_RS11610 -1.1 -2.5 glutamate dehydrogenase compare
BWI76_RS21070 -1.1 -1.1 outer membrane protein assembly factor BamB compare
BWI76_RS13595 -1.1 -4.0 transcriptional regulator compare
BWI76_RS02995 -1.1 -4.2 aspartate carbamoyltransferase compare
BWI76_RS26475 -1.1 -5.8 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS08640 -1.1 -1.8 multidrug efflux pump-associated protein, AcrZ family compare
BWI76_RS06525 -1.1 -3.8 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS17195 -1.1 -2.3 hypothetical protein compare
BWI76_RS06475 -1.1 -1.6 protoheme IX farnesyltransferase compare
BWI76_RS16485 -1.1 -1.7 ribonuclease T compare
BWI76_RS04570 -1.1 -3.9 RNA polymerase-associated protein RapA compare
BWI76_RS27680 -1.1 -2.9 TetR family transcriptional regulator compare
BWI76_RS25065 -1.1 -2.3 polyribonucleotide nucleotidyltransferase compare
BWI76_RS01325 -1.1 -1.5 twin-arginine translocase subunit TatB compare
BWI76_RS23365 -1.1 -5.0 LysR family transcriptional regulator compare
BWI76_RS13420 -1.1 -1.8 ABC transporter permease compare
BWI76_RS17000 -1.0 -2.7 Fe-S cluster assembly scaffold SufA compare
BWI76_RS09970 -1.0 -1.4 porin OmpA compare
BWI76_RS11860 -1.0 -4.1 anthranilate synthase component I compare
BWI76_RS19240 -1.0 -1.4 ABC transporter substrate-binding protein compare
BWI76_RS27865 -1.0 -2.6 hypothetical protein compare
BWI76_RS25920 -1.0 -0.7 peptidylprolyl isomerase compare
BWI76_RS01800 -1.0 -2.9 glucose-6-phosphate isomerase compare
BWI76_RS21345 -1.0 -2.1 sigma-E factor regulatory protein RseB compare
BWI76_RS21000 -1.0 -3.8 exopolyphosphatase compare
BWI76_RS16470 -1.0 -1.5 transcriptional repressor NemR compare
BWI76_RS16995 -1.0 -4.1 Fe-S cluster assembly protein SufB compare
BWI76_RS05350 -1.0 -5.0 Rcs stress response system protein RcsF compare
BWI76_RS13435 -1.0 -1.4 hypothetical protein compare
BWI76_RS15825 -1.0 -1.1 hypothetical protein compare
BWI76_RS27820 -1.0 -1.6 ilvB operon leader peptide IvbL compare
BWI76_RS20695 -1.0 -3.4 sulfate/thiosulfate transporter permease subunit compare
BWI76_RS22645 -1.0 -3.7 RNA polymerase sigma factor RpoS compare
BWI76_RS18065 -1.0 -1.7 DNA polymerase III subunit theta compare
BWI76_RS20380 -1.0 -1.2 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS25300 -1.0 -2.2 hybrid sensor histidine kinase/response regulator compare
BWI76_RS23530 -1.0 -2.6 MarR family transcriptional regulator compare
BWI76_RS06635 -1.0 -2.0 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS06495 -1.0 -4.4 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS18060 -1.0 -2.1 hypothetical protein compare
BWI76_RS27290 -1.0 -4.7 hypothetical protein compare
BWI76_RS02735 -1.0 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS09635 -1.0 -2.1 amino acid ABC transporter ATP-binding protein compare
BWI76_RS14375 -1.0 -1.5 hypothetical protein compare
BWI76_RS25600 -0.9 -1.0 tRNA-Thr compare
BWI76_RS07065 -0.9 -4.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS00720 -0.9 -1.0 DNA-binding response regulator compare
BWI76_RS15835 -0.9 -1.1 hypothetical protein compare
BWI76_RS01135 -0.9 -3.8 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS10825 -0.9 -2.2 deferrochelatase/peroxidase EfeB compare
BWI76_RS08515 -0.9 -1.7 acyl-CoA thioesterase YbgC compare
BWI76_RS26075 -0.9 -2.9 DNA adenine methylase compare
BWI76_RS26480 -0.9 -2.2 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS17770 -0.9 -1.6 isomerase/hydrolase compare
BWI76_RS01060 -0.9 -5.2 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase compare
BWI76_RS11965 -0.9 -2.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS11410 -0.9 -1.7 leucine efflux protein compare
BWI76_RS23485 -0.9 -5.0 hypothetical protein compare
BWI76_RS09690 -0.9 -2.0 dimethyl sulfoxide reductase compare
BWI76_RS09895 -0.9 -1.7 aliphatic sulfonates ABC transporter ATP-binding protein compare


Specific Phenotypes

For 7 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted across organisms