Experiment set12IT024 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS22120 +8.4 72.1 glutamate--cysteine ligase compare
BWI76_RS07465 +6.6 35.4 TetR family transcriptional regulator compare
BWI76_RS24075 +6.3 17.6 glutathione synthase compare
BWI76_RS02605 +2.9 14.4 esterase compare
BWI76_RS20995 +2.9 19.4 RNA degradosome polyphosphate kinase compare
BWI76_RS03025 +2.4 8.8 N-acetyltransferase compare
BWI76_RS06785 +2.4 10.2 DNA-binding transcriptional repressor AcrR compare
BWI76_RS22090 +2.1 5.3 transcriptional regulator compare
BWI76_RS27675 +1.8 10.0 EmrB/QacA family drug resistance transporter compare
BWI76_RS25475 +1.7 12.6 TIGR02099 family protein compare
BWI76_RS06535 +1.6 8.3 endopeptidase La compare
BWI76_RS08250 +1.5 1.3 tricarballylate utilization protein B compare
BWI76_RS18610 +1.5 1.4 transcriptional regulator LysR compare
BWI76_RS02180 +1.5 1.2 hypothetical protein compare
BWI76_RS20360 +1.4 2.4 cell division protein DedD compare
BWI76_RS20640 +1.4 4.5 cysteine synthase A compare
BWI76_RS11155 +1.3 2.9 penicillin-binding protein activator LpoB compare
BWI76_RS24100 +1.2 6.1 YggS family pyridoxal phosphate enzyme compare
BWI76_RS17915 +1.2 3.9 membrane protein compare
BWI76_RS00025 +1.1 1.6 hypothetical protein compare
BWI76_RS23300 +1.0 4.2 YgdI/YgdR family lipoprotein compare
BWI76_RS26095 +1.0 2.0 shikimate kinase compare
BWI76_RS03815 +1.0 4.4 hypothetical protein compare
BWI76_RS21235 +1.0 2.0 hypothetical protein compare
BWI76_RS05005 +1.0 3.7 polynucleotide adenylyltransferase compare
BWI76_RS15965 +1.0 3.8 MFS transporter compare
BWI76_RS00140 +1.0 1.6 phosphate transport system regulator PhoU compare
BWI76_RS23015 +1.0 2.3 cobalt transporter ATP-binding subunit compare
BWI76_RS09730 +0.9 2.2 pyruvate formate lyase 1-activating protein compare
BWI76_RS04525 +0.9 1.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS10755 +0.9 1.9 pyrimidine utilization flavin reductase protein F compare
BWI76_RS14075 +0.9 1.4 TetR family transcriptional regulator compare
BWI76_RS16920 +0.9 1.1 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS09625 +0.8 1.9 hypothetical protein compare
BWI76_RS26045 +0.8 2.7 nitrite reductase small subunit compare
BWI76_RS04850 +0.8 4.6 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS20390 +0.8 1.7 erythronate-4-phosphate dehydrogenase compare
BWI76_RS19935 +0.8 1.8 hypothetical protein compare
BWI76_RS13545 +0.8 1.6 N-acetyltransferase compare
BWI76_RS10575 +0.8 1.4 polar amino acid ABC transporter permease compare
BWI76_RS06370 +0.7 2.6 phosphatidylglycerophosphatase A compare
BWI76_RS22085 +0.7 2.1 L-valine transporter subunit YgaH compare
BWI76_RS15970 +0.7 3.1 carboxypeptidase M32 compare
BWI76_RS13840 +0.7 0.8 MBL fold metallo-hydrolase compare
BWI76_RS02860 +0.7 1.7 glycine dehydrogenase compare
BWI76_RS24480 +0.7 4.2 undecaprenyl-diphosphatase compare
BWI76_RS13630 +0.7 1.1 ABC transporter compare
BWI76_RS14740 +0.7 1.8 LysR family transcriptional regulator compare
BWI76_RS20750 +0.7 1.2 carboxysome structural protein EutK compare
BWI76_RS11335 +0.7 1.3 tautomerase compare
BWI76_RS08790 +0.7 4.3 two-component sensor histidine kinase compare
BWI76_RS23290 +0.7 0.9 DNA mismatch repair protein MutH compare
BWI76_RS19100 +0.7 3.5 putative acid phosphatase compare
BWI76_RS08975 +0.7 1.5 amino acid ABC transporter substrate-binding protein compare
BWI76_RS08795 +0.7 2.4 DNA-binding response regulator compare
BWI76_RS08925 +0.7 3.8 DNA-binding protein YbiB compare
BWI76_RS09100 +0.7 3.7 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS09540 +0.7 1.7 hypothetical protein compare
BWI76_RS22685 +0.7 2.8 hypothetical protein compare
BWI76_RS26810 +0.7 3.6 cellulose biosynthesis protein BcsG compare
BWI76_RS14835 +0.7 0.8 hypothetical protein compare
BWI76_RS15865 +0.7 2.3 hypothetical protein compare
BWI76_RS21370 +0.7 1.4 ATP-dependent RNA helicase SrmB compare
BWI76_RS07780 +0.7 1.3 hypothetical protein compare
BWI76_RS04815 +0.6 2.7 cell division protein ZapD compare
BWI76_RS17970 +0.6 1.8 zinc metalloprotease HtpX compare
BWI76_RS23500 +0.6 5.7 hypothetical protein compare
BWI76_RS22810 +0.6 3.7 23S rRNA (uracil(1939)-C(5))-methyltransferase compare
BWI76_RS25285 +0.6 1.0 HPr family phosphocarrier protein compare
BWI76_RS12950 +0.6 2.5 acriflavin resistance protein AcrA compare
BWI76_RS18410 +0.6 2.1 drug/metabolite exporter YedA compare
BWI76_RS10375 +0.6 1.9 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS23705 +0.6 1.2 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS16935 +0.6 1.0 shikimate dehydrogenase compare
BWI76_RS17910 +0.6 3.8 hypothetical protein compare
BWI76_RS18540 +0.6 3.8 signal transduction protein PmrD compare
BWI76_RS13820 +0.6 1.7 hypothetical protein compare
BWI76_RS12825 +0.6 1.9 hypothetical protein compare
BWI76_RS19460 +0.6 1.3 lipoprotein compare
BWI76_RS26205 +0.6 1.6 glucose-1-phosphate adenylyltransferase compare
BWI76_RS18080 +0.6 2.1 protein YebE compare
BWI76_RS06800 +0.6 1.1 DUF2496 domain-containing protein compare
BWI76_RS04270 +0.6 2.6 transaldolase compare
BWI76_RS14650 +0.6 1.7 helix-turn-helix transcriptional regulator compare
BWI76_RS26785 +0.6 3.8 UDP-forming cellulose synthase catalytic subunit compare
BWI76_RS08585 +0.6 2.7 nicotinamide riboside transporter PnuC compare
BWI76_RS09520 +0.6 1.6 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS14980 +0.6 1.1 hypothetical protein compare
BWI76_RS22850 +0.6 2.0 tRNA pseudouridine synthase TruC compare
BWI76_RS14470 +0.6 2.7 L-serine ammonia-lyase compare
BWI76_RS21980 +0.6 1.7 hypothetical protein compare
BWI76_RS19230 +0.6 2.5 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS09095 +0.6 2.6 glutathione ABC transporter ATP-binding protein GsiA compare
BWI76_RS09455 +0.6 1.6 YbjN domain-containing protein compare
BWI76_RS25480 +0.6 1.4 ribonuclease E/G compare
BWI76_RS26520 +0.6 2.1 nickel import ATP-binding protein NikE compare
BWI76_RS20720 +0.6 1.1 hypothetical protein compare
BWI76_RS21485 +0.6 3.0 DUF4154 domain-containing protein compare
BWI76_RS20665 +0.6 2.3 bifunctional pyridoxal kinase/hydroxymethylpyrimidine kinase compare
BWI76_RS00865 +0.6 2.6 DNA-binding transcriptional regulator OxyR compare
BWI76_RS23470 +0.5 4.5 hypothetical protein compare
BWI76_RS01650 +0.5 1.9 acetyltransferase compare
BWI76_RS12780 +0.5 1.1 hypothetical protein compare
BWI76_RS11635 +0.5 0.7 ABC transporter compare
BWI76_RS22635 +0.5 1.3 MFS transporter compare
BWI76_RS16950 +0.5 0.8 TetR family transcriptional regulator compare
BWI76_RS17330 +0.5 2.1 nitrate reductase subunit beta compare
BWI76_RS24945 +0.5 0.8 glutamine amidotransferase compare
BWI76_RS21490 +0.5 3.6 GGDEF domain-containing protein compare
BWI76_RS05970 +0.5 2.1 hypothetical protein compare
BWI76_RS16395 +0.5 2.2 glutathione S-transferase compare
BWI76_RS17080 +0.5 1.8 hypothetical protein compare
BWI76_RS22700 +0.5 3.0 sulfate adenylyltransferase subunit 2 compare
BWI76_RS12170 +0.5 1.5 hypothetical protein compare
BWI76_RS19680 +0.5 2.6 catecholate siderophore receptor CirA compare
BWI76_RS10070 +0.5 2.4 BAX inhibitor protein compare
BWI76_RS08380 +0.5 1.1 endonuclease VIII compare
BWI76_RS27915 +0.5 1.1 YceK/YidQ family lipoprotein compare
BWI76_RS14845 +0.5 2.8 hypothetical protein compare
BWI76_RS23985 +0.5 1.6 erythrose-4-phosphate dehydrogenase compare
BWI76_RS05165 +0.5 1.9 cobalamin-binding protein compare
BWI76_RS23495 +0.5 3.4 hypothetical protein compare
BWI76_RS04055 +0.5 4.6 GGDEF domain-containing protein compare
BWI76_RS15530 +0.5 1.3 hypothetical protein compare
BWI76_RS11640 +0.5 2.1 ABC transporter membrane protein compare
BWI76_RS15195 +0.5 1.2 DUF4186 domain-containing protein compare
BWI76_RS25705 +0.5 2.0 hypothetical protein compare
BWI76_RS02885 +0.5 2.3 dihydroorotase compare
BWI76_RS21245 +0.5 1.5 nitrogen regulatory protein P-II compare
BWI76_RS12125 +0.5 1.4 hypothetical protein compare
BWI76_RS23505 +0.5 4.5 ferrous iron transporter B compare
BWI76_RS16355 +0.5 1.5 electron transport complex subunit A compare
BWI76_RS12105 +0.5 1.9 hypothetical protein compare
BWI76_RS09975 +0.5 2.0 cell division inhibitor SulA compare
BWI76_RS12485 +0.5 2.3 TyrR family transcriptional regulator compare
BWI76_RS13130 +0.5 1.5 phenylacetic acid degradation protein PaaD compare
BWI76_RS24460 +0.5 3.1 bifunctional glutamine synthetase adenylyltransferase/deadenyltransferase compare
BWI76_RS07455 +0.5 2.4 NAD(P)H nitroreductase compare
BWI76_RS01690 +0.5 2.2 membrane protein compare
BWI76_RS11105 +0.5 1.8 aminodeoxychorismate lyase compare
BWI76_RS12610 +0.5 2.2 LysR family transcriptional regulator compare
BWI76_RS07955 +0.5 1.5 nucleoside diphosphate kinase regulator compare
BWI76_RS16860 +0.5 2.6 acyl-CoA dehydrogenase compare
BWI76_RS06405 +0.5 1.3 2-dehydropantoate 2-reductase compare
BWI76_RS15620 +0.5 1.1 hypothetical protein compare
BWI76_RS19785 +0.5 1.6 microcin C ABC transporter permease YejB compare
BWI76_RS26020 +0.5 1.6 peptidylprolyl isomerase A compare
BWI76_RS13240 +0.5 0.9 hypothetical protein compare
BWI76_RS16285 +0.5 2.8 hypothetical protein compare
BWI76_RS16085 +0.5 2.6 two-component system sensor histidine kinase DcuS compare
BWI76_RS11805 +0.5 2.5 hypothetical protein compare
BWI76_RS15960 +0.5 1.8 LysR family transcriptional regulator compare
BWI76_RS20085 +0.5 1.7 GNAT family N-acetyltransferase compare
BWI76_RS18235 +0.5 1.3 trehalose-phosphatase compare
BWI76_RS24150 +0.5 2.6 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
BWI76_RS19470 +0.5 1.3 DNA-binding response regulator compare
BWI76_RS24260 +0.5 1.4 hypothetical protein compare
BWI76_RS07855 +0.5 1.4 PucR family transcriptional regulator compare
BWI76_RS18905 +0.5 0.9 putrescine/spermidine ABC transporter compare
BWI76_RS03190 +0.5 1.1 hypothetical protein compare
BWI76_RS18360 +0.5 0.7 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS16775 +0.5 1.6 malate/lactate/ureidoglycolate dehydrogenase compare
BWI76_RS11040 +0.5 2.1 ribonuclease E compare
BWI76_RS25290 +0.5 2.4 monofunctional biosynthetic peptidoglycan transglycosylase compare
BWI76_RS00710 +0.5 1.0 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS24080 +0.5 0.9 DUF179 domain-containing protein compare
BWI76_RS00640 +0.5 1.7 L-rhamnose mutarotase compare
BWI76_RS18240 +0.5 1.0 L-arabinose ABC transporter permease AraH compare
BWI76_RS22935 +0.5 0.5 L-fucose mutarotase compare
BWI76_RS06520 +0.5 2.0 trigger factor compare
BWI76_RS10875 +0.5 1.5 quercetin 2,3-dioxygenase compare
BWI76_RS26175 +0.5 2.0 DeoR/GlpR family transcriptional regulator compare
BWI76_RS08615 +0.5 3.4 galactokinase compare
BWI76_RS22630 +0.5 1.4 LysR family transcriptional regulator compare
BWI76_RS19330 +0.5 0.7 HAD family hydrolase compare
BWI76_RS14310 +0.5 2.6 hypothetical protein compare
BWI76_RS11775 +0.5 1.1 2-deoxy-D-gluconate 3-dehydrogenase compare
BWI76_RS00180 +0.5 1.2 F0F1 ATP synthase subunit epsilon compare
BWI76_RS00450 +0.5 1.5 formate dehydrogenase accessory protein FdhE compare
BWI76_RS22600 +0.5 1.7 DNA mismatch repair protein MutS compare
BWI76_RS10330 +0.4 1.8 TetR family transcriptional regulator compare
BWI76_RS02525 +0.4 1.3 DNA mismatch repair protein MutL compare
BWI76_RS15745 +0.4 1.7 hypothetical protein compare
BWI76_RS27745 +0.4 1.8 PTS sugar transporter subunit IIB compare
BWI76_RS09105 +0.4 1.3 glutathione ABC transporter permease GsiC compare
BWI76_RS13575 +0.4 2.0 sugar binding transcriptional regulator, LacI family protein compare
BWI76_RS03605 +0.4 1.0 BMC domain-containing protein compare
BWI76_RS18580 +0.4 1.1 hypothetical protein compare
BWI76_RS25415 +0.4 1.6 GntR family transcriptional regulator compare
BWI76_RS17375 +0.4 1.1 nitrate ABC transporter, permease protein compare
BWI76_RS04705 +0.4 2.0 DNA-binding transcriptional regulator FruR compare
BWI76_RS19530 +0.4 1.4 YIP1 family protein compare
BWI76_RS02270 +0.4 2.7 DSBA oxidoreductase compare
BWI76_RS23215 +0.4 1.5 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS23690 +0.4 1.1 putative glyoxalase/bleomycin resistance protein/dioxygenase compare
BWI76_RS14170 +0.4 1.4 hypothetical protein compare
BWI76_RS14675 +0.4 1.1 fimbrial chaperone YfcS compare
BWI76_RS24955 +0.4 1.1 hypothetical protein compare
BWI76_RS06175 +0.4 1.8 DUF188 domain-containing protein compare
BWI76_RS10635 +0.4 2.4 GGDEF domain-containing protein compare


Specific Phenotypes

For 7 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted across organisms