Experiment set12IT023 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and Ammonium chloride (N); with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS06055 -4.5 -3.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS01620 -4.1 -10.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20580 -4.0 -14.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS01625 -3.8 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS27365 -3.8 -11.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS25760 -3.7 -14.4 glucose-6-phosphate isomerase compare
PFLU_RS01900 -3.7 -10.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS04470 -3.6 -14.3 histidinol dehydrogenase compare
PFLU_RS20575 -3.6 -8.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS00180 -3.5 -8.5 tryptophan synthase subunit beta compare
PFLU_RS24330 -3.5 -9.3 phosphogluconate dehydratase compare
PFLU_RS20565 -3.4 -16.9 3-isopropylmalate dehydrogenase compare
PFLU_RS02590 -3.4 -11.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS27370 -3.4 -14.6 anthranilate phosphoribosyltransferase compare
PFLU_RS25360 -3.4 -8.9 glutamate 5-kinase compare
PFLU_RS01610 -3.3 -14.5 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS27910 -3.3 -1.8 helix-turn-helix transcriptional regulator compare
PFLU_RS01605 -3.3 -10.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20510 -3.3 -16.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28385 -3.3 -14.8 homoserine O-acetyltransferase compare
PFLU_RS10765 -3.3 -11.5 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS00175 -3.2 -11.3 tryptophan synthase subunit alpha compare
PFLU_RS04465 -3.2 -10.2 ATP phosphoribosyltransferase compare
PFLU_RS20540 -3.1 -12.7 phosphoribosylanthranilate isomerase compare
PFLU_RS30215 -3.0 -9.4 KTSC domain-containing protein compare
PFLU_RS28535 -3.0 -16.1 dihydroxy-acid dehydratase compare
PFLU_RS22595 -3.0 -2.1 OmpA family protein compare
PFLU_RS25640 -2.9 -14.9 ketol-acid reductoisomerase compare
PFLU_RS28165 -2.9 -14.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS27475 -2.9 -5.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS24765 -2.9 -18.3 2-isopropylmalate synthase compare
PFLU_RS05630 -2.8 -2.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS12450 -2.8 -12.4 cyclic peptide export ABC transporter compare
PFLU_RS02490 -2.8 -13.3 phosphoserine phosphatase SerB compare
PFLU_RS09055 -2.6 -3.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS20290 -2.6 -3.0 integration host factor subunit alpha compare
PFLU_RS31830 -2.6 -2.0 hypothetical protein compare
PFLU_RS20515 -2.5 -3.4 amidophosphoribosyltransferase compare
PFLU_RS18410 -2.5 -4.7 response regulator compare
PFLU_RS00065 -2.5 -8.3 lysophospholipid acyltransferase compare
PFLU_RS01895 -2.5 -7.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS25595 -2.4 -4.0 exodeoxyribonuclease V subunit gamma compare
PFLU_RS25585 -2.4 -3.9 exodeoxyribonuclease V subunit alpha compare
PFLU_RS16435 -2.3 -12.5 glycogen debranching protein GlgX compare
PFLU_RS01095 -2.2 -4.5 ribbon-helix-helix protein, CopG family compare
PFLU_RS14550 -2.2 -7.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28390 -2.1 -8.1 methionine biosynthesis protein MetW compare
PFLU_RS16410 -2.1 -14.2 glycogen synthase GlgA compare
PFLU_RS13750 -2.1 -2.9 hypothetical protein compare
PFLU_RS02625 -2.0 -11.2 ribonuclease R compare
PFLU_RS22645 -2.0 -11.0 EamA family transporter compare
PFLU_RS23380 -2.0 -3.3 HAD-IB family hydrolase compare
PFLU_RS21665 -2.0 -6.9 MinD/ParA family protein compare
PFLU_RS02275 -2.0 -2.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS25715 -1.9 -9.7 RNA polymerase-binding protein DksA compare
PFLU_RS13475 -1.9 -11.2 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS22740 -1.9 -4.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS05690 -1.9 -2.5 Grx4 family monothiol glutaredoxin compare
PFLU_RS26735 -1.8 -7.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS08505 -1.8 -5.6 protease HtpX compare
PFLU_RS31510 -1.8 -3.4 transcriptional regulator compare
PFLU_RS23070 -1.8 -1.5 50S ribosomal protein L32 compare
PFLU_RS04150 -1.8 -6.8 DUF1043 family protein compare
PFLU_RS19015 -1.8 -6.3 anti-sigma factor compare
PFLU_RS28645 -1.7 -9.9 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS16425 -1.7 -9.6 malto-oligosyltrehalose synthase compare
PFLU_RS25735 -1.7 -7.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS16415 -1.7 -9.6 malto-oligosyltrehalose trehalohydrolase compare
PFLU_RS28695 -1.7 -4.0 phosphoglycerate dehydrogenase compare
PFLU_RS04015 -1.7 -2.7 1-phosphofructokinase compare
PFLU_RS24555 -1.6 -3.6 thioredoxin fold domain-containing protein compare
PFLU_RS08155 -1.6 -5.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS04070 -1.6 -3.5 peptide chain release factor 3 compare
PFLU_RS13485 -1.6 -10.2 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS29515 -1.6 -8.4 RidA family protein compare
PFLU_RS30165 -1.6 -6.8 ParA family protein compare
PFLU_RS12975 -1.6 -4.2 DUF934 domain-containing protein compare
PFLU_RS07685 -1.6 -3.1 transcriptional repressor LexA compare
PFLU_RS18505 -1.6 -8.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS21425 -1.6 -2.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS07645 -1.5 -3.6 hypothetical protein compare
PFLU_RS15410 -1.5 -2.8 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS13540 -1.5 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS08125 -1.5 -3.3 integration host factor subunit beta compare
PFLU_RS14335 -1.5 -2.2 ABC transporter permease compare
PFLU_RS08650 -1.5 -2.1 heme exporter protein CcmB compare
PFLU_RS13715 -1.4 -2.0 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS28320 -1.4 -3.7 glutathione synthase compare
PFLU_RS28315 -1.4 -1.0 response regulator compare
PFLU_RS15910 -1.4 -1.3 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS29400 -1.4 -1.7 DUF1127 domain-containing protein compare
PFLU_RS01960 -1.4 -2.2 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS18530 -1.4 -3.8 DNA translocase FtsK compare
PFLU_RS15005 -1.4 -2.4 hypothetical protein compare
PFLU_RS02050 -1.3 -9.7 NAD(P)-binding protein compare
PFLU_RS23585 -1.3 -6.0 GntP family permease compare
PFLU_RS31490 -1.3 -1.1 hypothetical protein compare
PFLU_RS31800 -1.3 -1.3 hypothetical protein compare
PFLU_RS23725 -1.3 -7.6 glucose-6-phosphate dehydrogenase compare
PFLU_RS18670 -1.3 -2.5 NADH-quinone oxidoreductase subunit M compare
PFLU_RS02215 -1.3 -2.6 hypothetical protein compare
PFLU_RS03995 -1.3 -1.2 hypothetical protein compare
PFLU_RS24980 -1.3 -2.7 purine-binding chemotaxis protein CheW compare
PFLU_RS12800 -1.3 -2.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01390 -1.3 -4.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS18395 -1.3 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS04435 -1.2 -5.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS04780 -1.2 -3.0 hypothetical protein compare
PFLU_RS02455 -1.2 -2.0 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS05500 -1.2 -1.9 HigA family addiction module antidote protein compare
PFLU_RS01285 -1.2 -2.0 HAMP domain-containing protein compare
PFLU_RS29360 -1.2 -1.3 cytochrome c5 family protein compare
PFLU_RS14440 -1.2 -1.6 hypothetical protein compare
PFLU_RS29880 -1.2 -6.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS07725 -1.1 -3.0 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS31635 -1.1 -1.5 IS21 family transposase compare
PFLU_RS15725 -1.1 -4.2 siderophore-iron reductase FhuF compare
PFLU_RS24160 -1.1 -5.7 HAMP domain-containing protein compare
PFLU_RS24085 -1.1 -3.3 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS20970 -1.1 -1.1 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS23235 -1.1 -2.0 Arc family DNA-binding protein compare
PFLU_RS28655 -1.1 -7.3 HAD family hydrolase compare
PFLU_RS23390 -1.1 -1.3 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS22190 -1.1 -1.1 hypothetical protein compare
PFLU_RS19550 -1.1 -0.9 ABC transporter ATP-binding protein compare
PFLU_RS25755 -1.1 -3.0 pantoate--beta-alanine ligase compare
PFLU_RS07230 -1.1 -5.3 RNA polymerase sigma factor RpoE compare
PFLU_RS04315 -1.0 -2.1 rod shape-determining protein MreD compare
PFLU_RS18665 -1.0 -3.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS06320 -1.0 -2.0 OmpH family outer membrane protein compare
PFLU_RS25390 -1.0 -4.2 hypothetical protein compare
PFLU_RS04440 -1.0 -6.1 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS29885 -1.0 -5.3 LysR family transcriptional regulator compare
PFLU_RS21260 -1.0 -3.5 DUF3509 domain-containing protein compare
PFLU_RS29875 -1.0 -6.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS08670 -1.0 -3.1 heme lyase CcmF/NrfE family subunit compare
PFLU_RS04445 -1.0 -4.4 ABC transporter substrate-binding protein compare
PFLU_RS19555 -1.0 -1.3 histidine phosphatase family protein compare
PFLU_RS22725 -1.0 -1.3 transcriptional regulator compare
PFLU_RS07275 -1.0 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS13035 -1.0 -2.1 cobalamin biosynthesis protein CobW compare
PFLU_RS27465 -1.0 -3.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS13850 -1.0 -2.3 hypothetical protein compare
PFLU_RS31100 -1.0 -2.5 preprotein translocase subunit SecG compare
PFLU_RS05750 -1.0 -1.5 methionine--tRNA ligase compare
PFLU_RS18595 -0.9 -2.8 cupin domain-containing protein compare
PFLU_RS31675 -0.9 -1.0 hypothetical protein compare
PFLU_RS12980 -0.9 -4.5 nitrite/sulfite reductase compare
PFLU_RS17615 -0.9 -1.8 DeoR/GlpR transcriptional regulator compare
PFLU_RS05340 -0.9 -2.0 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS00870 -0.9 -1.1 hypothetical protein compare
PFLU_RS17495 -0.9 -1.9 hypothetical protein compare
PFLU_RS00310 -0.9 -1.5 twin transmembrane helix small protein compare
PFLU_RS07690 -0.9 -4.6 helix-turn-helix transcriptional regulator compare
PFLU_RS16420 -0.9 -5.1 4-alpha-glucanotransferase compare
PFLU_RS00520 -0.9 -2.3 DUF2388 domain-containing protein compare
PFLU_RS23045 -0.9 -4.1 beta-ketoacyl-ACP synthase II compare
PFLU_RS22520 -0.8 -1.4 GntR family transcriptional regulator compare
PFLU_RS19495 -0.8 -2.9 SDR family oxidoreductase compare
PFLU_RS31415 -0.8 -2.9 hypothetical protein compare
PFLU_RS19900 -0.8 -1.8 general secretion pathway protein GspM compare
PFLU_RS31275 -0.8 -1.3 hypothetical protein compare
PFLU_RS09550 -0.8 -2.5 hypothetical protein compare
PFLU_RS24785 -0.8 -4.6 outer membrane protein assembly factor BamB compare
PFLU_RS17505 -0.8 -1.9 hypothetical protein compare
PFLU_RS11760 -0.8 -2.3 GlxA family transcriptional regulator compare
PFLU_RS10980 -0.8 -2.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS28820 -0.8 -1.5 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS06650 -0.8 -1.8 DUF2288 domain-containing protein compare
PFLU_RS12025 -0.8 -2.8 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS08660 -0.8 -1.6 heme exporter protein CcmD compare
PFLU_RS00395 -0.8 -5.9 DNA polymerase I compare
PFLU_RS23525 -0.8 -3.4 SDR family oxidoreductase compare
PFLU_RS02045 -0.8 -6.7 glutamate synthase large subunit compare
PFLU_RS19170 -0.8 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS11525 -0.8 -1.8 GntR family transcriptional regulator compare
PFLU_RS08160 -0.8 -4.2 sugar transferase compare
PFLU_RS28210 -0.8 -2.1 RidA family protein compare
PFLU_RS13900 -0.8 -2.2 hypothetical protein compare
PFLU_RS08655 -0.8 -1.7 heme ABC transporter permease compare
PFLU_RS13765 -0.8 -1.8 hypothetical protein compare
PFLU_RS25120 -0.8 -1.5 response regulator compare
PFLU_RS09575 -0.7 -2.7 FadR family transcriptional regulator compare
PFLU_RS10090 -0.7 -1.7 redox-sensitive transcriptional activator SoxR compare
PFLU_RS08165 -0.7 -1.0 acyl carrier protein compare
PFLU_RS00440 -0.7 -5.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS31545 -0.7 -1.6 LysR family transcriptional regulator compare
PFLU_RS28340 -0.7 -1.2 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
PFLU_RS25645 -0.7 -1.3 acetolactate synthase small subunit compare
PFLU_RS31775 -0.7 -2.2 hypothetical protein compare
PFLU_RS15990 -0.7 -1.6 SDR family oxidoreductase compare
PFLU_RS28310 -0.7 -1.2 response regulator compare
PFLU_RS04430 -0.7 -3.4 ATP-binding cassette domain-containing protein compare
PFLU_RS30790 -0.7 -1.3 hypothetical protein compare
PFLU_RS28325 -0.7 -3.7 energy transducer TonB compare
PFLU_RS06430 -0.7 -4.7 RNA polymerase sigma factor RpoS compare
PFLU_RS30530 -0.7 -3.8 acetyltransferase compare
PFLU_RS20415 -0.7 -2.6 hypothetical protein compare
PFLU_RS00445 -0.7 -1.3 hypothetical protein compare
PFLU_RS13875 -0.7 -2.7 ImmA/IrrE family metallo-endopeptidase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in stress experiments

For stress Sucrose across organisms