Experiment set12IT023 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM

200 most important genes:

  gene name fitness t score description  
BWI76_RS26085 -5.3 -3.7 3-dehydroquinate synthase compare
BWI76_RS23920 -4.7 -8.4 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS20895 -4.5 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS09755 -4.5 -10.5 phosphoserine transaminase compare
BWI76_RS21070 -4.4 -4.0 outer membrane protein assembly factor BamB compare
BWI76_RS17720 -4.4 -2.0 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS04160 -4.3 -7.4 phosphoserine phosphatase compare
BWI76_RS00345 -4.3 -5.1 protein disulfide oxidoreductase DsbA compare
BWI76_RS20475 -4.1 -7.3 phospholipid-binding lipoprotein MlaA compare
BWI76_RS18140 -3.9 -5.1 zinc ABC transporter permease compare
BWI76_RS21350 -3.8 -4.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS20435 -3.6 -2.2 chorismate synthase compare
BWI76_RS25225 -3.5 -9.8 ABC transporter permease compare
BWI76_RS09760 -3.5 -7.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS01210 -3.4 -2.9 tyrosine recombinase XerC compare
BWI76_RS25215 -3.4 -5.8 phospholipid-binding protein MlaC compare
BWI76_RS25230 -3.4 -10.7 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS04470 -3.2 -10.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS01610 -3.1 -14.1 phosphoribosylamine--glycine ligase compare
BWI76_RS01615 -3.0 -10.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS25220 -3.0 -4.4 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS26570 -3.0 -3.6 anion permease compare
BWI76_RS16990 -2.9 -6.3 ABC transporter ATP-binding protein compare
BWI76_RS09660 -2.9 -2.0 DNA translocase FtsK compare
BWI76_RS22755 -2.9 -9.0 phosphoadenosine phosphosulfate reductase compare
BWI76_RS20965 -2.8 -5.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS20350 -2.8 -5.4 amidophosphoribosyltransferase compare
BWI76_RS23230 -2.8 -4.2 exodeoxyribonuclease V subunit beta compare
BWI76_RS22690 -2.7 -4.4 adenylyl-sulfate kinase compare
BWI76_RS16980 -2.7 -4.5 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS18135 -2.7 -6.2 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS18930 -2.7 -4.8 histidinol-phosphate transaminase compare
BWI76_RS07070 -2.7 -6.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04530 -2.7 -2.6 peptidylprolyl isomerase SurA compare
BWI76_RS23360 -2.7 -4.3 diaminopimelate decarboxylase compare
BWI76_RS21265 -2.7 -14.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04465 -2.6 -5.5 carbamoyl-phosphate synthase small subunit compare
BWI76_RS00855 -2.6 -11.7 argininosuccinate lyase compare
BWI76_RS15215 -2.6 -2.0 N-acetyltransferase compare
BWI76_RS08385 -2.5 -3.2 citrate (Si)-synthase compare
BWI76_RS20355 -2.5 -4.9 colicin V production protein compare
BWI76_RS18950 -2.5 -6.9 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS05840 -2.4 -5.6 glutamate 5-kinase compare
BWI76_RS00805 -2.4 -4.4 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS23240 -2.4 -3.9 exonuclease V subunit gamma compare
BWI76_RS00400 -2.3 -2.2 glutamine synthetase compare
BWI76_RS27310 -2.3 -11.9 glycosyltransferase compare
BWI76_RS22760 -2.3 -5.4 sulfite reductase subunit beta compare
BWI76_RS03010 -2.3 -8.4 ornithine carbamoyltransferase compare
BWI76_RS27430 -2.3 -2.3 (p)ppGpp synthetase compare
BWI76_RS16975 -2.3 -5.5 cysteine desufuration protein SufE compare
BWI76_RS18935 -2.3 -8.8 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS05835 -2.2 -3.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS02530 -2.2 -3.0 tRNA dimethylallyltransferase compare
BWI76_RS18925 -2.2 -7.5 histidinol dehydrogenase compare
BWI76_RS18130 -2.2 -3.1 zinc ABC transporter substrate-binding protein compare
BWI76_RS25115 -2.2 -10.0 argininosuccinate synthase compare
BWI76_RS19845 -2.2 -6.6 phosphatase compare
BWI76_RS00850 -2.1 -12.4 acetylglutamate kinase compare
BWI76_RS22765 -2.1 -9.7 sulfite reductase subunit alpha compare
BWI76_RS04250 -2.1 -9.4 homoserine kinase compare
BWI76_RS04645 -2.1 -6.9 3-dehydroquinase compare
BWI76_RS06775 -2.1 -11.0 multidrug efflux RND transporter permease subunit compare
BWI76_RS15825 -2.0 -1.6 hypothetical protein compare
BWI76_RS00975 -2.0 -7.7 dihydroxy-acid dehydratase compare
BWI76_RS18955 -2.0 -6.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS23220 -2.0 -7.5 amino-acid N-acetyltransferase compare
BWI76_RS18165 -2.0 -2.5 NUDIX pyrophosphatase compare
BWI76_RS00965 -2.0 -1.7 acetolactate synthase 2 small subunit compare
BWI76_RS00845 -2.0 -11.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS07065 -1.9 -5.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS24400 -1.9 -7.0 outer membrane channel protein TolC compare
BWI76_RS04255 -1.9 -7.6 threonine synthase compare
BWI76_RS16995 -1.9 -9.2 Fe-S cluster assembly protein SufB compare
BWI76_RS18940 -1.8 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS26200 -1.8 -4.5 starch synthase compare
BWI76_RS23480 -1.8 -8.5 EAL domain-containing protein compare
BWI76_RS00835 -1.8 -9.9 phosphoenolpyruvate carboxylase compare
BWI76_RS10990 -1.8 -4.1 dihydroorotase compare
BWI76_RS00240 -1.8 -3.3 FMN-binding protein MioC compare
BWI76_RS11840 -1.8 -3.6 tryptophan synthase subunit alpha compare
BWI76_RS20650 -1.8 -2.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS21580 -1.7 -2.8 SsrA-binding protein compare
BWI76_RS11980 -1.7 -2.2 DeoR family transcriptional regulator compare
BWI76_RS25060 -1.7 -4.0 lipoprotein NlpI compare
BWI76_RS00940 -1.7 -6.4 transcriptional regulator HdfR compare
BWI76_RS18920 -1.7 -4.2 ATP phosphoribosyltransferase compare
BWI76_RS24280 -1.6 -2.7 biopolymer transporter ExbB compare
BWI76_RS11845 -1.6 -5.1 tryptophan synthase subunit beta compare
BWI76_RS04245 -1.6 -9.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS01325 -1.6 -3.1 twin-arginine translocase subunit TatB compare
BWI76_RS23365 -1.6 -3.7 LysR family transcriptional regulator compare
BWI76_RS04680 -1.6 -10.4 2-isopropylmalate synthase compare
BWI76_RS17980 -1.6 -5.0 RNA chaperone ProQ compare
BWI76_RS27305 -1.6 -8.2 glycosyl transferase compare
BWI76_RS04670 -1.6 -7.0 3-isopropylmalate dehydratase large subunit compare
BWI76_RS17975 -1.6 -4.5 tail-specific protease compare
BWI76_RS24275 -1.5 -4.6 biopolymer transport protein ExbD compare
BWI76_RS19805 -1.5 -4.6 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS21475 -1.5 -6.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS02995 -1.5 -6.5 aspartate carbamoyltransferase compare
BWI76_RS04665 -1.5 -12.2 3-isopropylmalate dehydratase small subunit compare
BWI76_RS21345 -1.5 -2.9 sigma-E factor regulatory protein RseB compare
BWI76_RS04675 -1.5 -5.3 3-isopropylmalate dehydrogenase compare
BWI76_RS04685 -1.5 -9.2 putative leucine operon leader peptide compare
BWI76_RS26480 -1.5 -5.0 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS10035 -1.5 -2.1 hypothetical protein compare
BWI76_RS21565 -1.5 -1.5 outer membrane protein assembly factor BamE compare
BWI76_RS07730 -1.5 -2.0 iron-enterobactin transporter membrane protein compare
BWI76_RS07740 -1.5 -1.9 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS00960 -1.4 -5.7 acetolactate synthase 2 catalytic subunit compare
BWI76_RS18065 -1.4 -2.5 DNA polymerase III subunit theta compare
BWI76_RS01065 -1.4 -5.0 ATP-dependent RNA helicase RhlB compare
BWI76_RS26475 -1.4 -8.2 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS05260 -1.4 -2.5 chaperone compare
BWI76_RS06765 -1.4 -2.9 transcriptional regulator compare
BWI76_RS26460 -1.4 -3.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS01330 -1.4 -3.3 twin-arginine translocase subunit TatC compare
BWI76_RS20375 -1.4 -2.7 membrane protein compare
BWI76_RS01585 -1.4 -4.0 transcriptional regulator compare
BWI76_RS00990 -1.4 -5.8 ketol-acid reductoisomerase compare
BWI76_RS17190 -1.4 -2.5 TonB system transport protein TonB compare
BWI76_RS05200 -1.4 -2.4 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS26455 -1.4 -4.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS11850 -1.4 -8.7 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS25960 -1.3 -3.3 NUDIX hydrolase compare
BWI76_RS23885 -1.3 -2.3 2-octaprenylphenol hydroxylase compare
BWI76_RS02410 -1.3 -1.5 EF-P beta-lysylation protein EpmB compare
BWI76_RS26485 -1.3 -6.6 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
BWI76_RS07725 -1.3 -1.6 iron-enterobactin transporter permease compare
BWI76_RS01655 -1.3 -7.0 homoserine O-succinyltransferase compare
BWI76_RS24930 -1.3 -3.9 osmotically-inducible protein OsmY compare
BWI76_RS22095 -1.3 -3.3 multidrug export protein EmrA compare
BWI76_RS05015 -1.3 -1.9 transcriptional regulator compare
BWI76_RS06770 -1.3 -6.9 Hha toxicity attenuator compare
BWI76_RS07705 -1.2 -3.0 enterochelin esterase compare
BWI76_RS02735 -1.2 -3.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS00970 -1.2 -3.9 branched chain amino acid aminotransferase compare
BWI76_RS26395 -1.2 -2.4 cell division protein FtsE compare
BWI76_RS22805 -1.2 -6.5 GTP diphosphokinase compare
BWI76_RS20690 -1.2 -6.0 sulfate ABC transporter ATP-binding protein compare
BWI76_RS25485 -1.2 -1.9 septum formation protein Maf compare
BWI76_RS26390 -1.2 -4.2 cell division protein FtsX compare
BWI76_RS19010 -1.2 -2.3 polysaccharide pyruvyl transferase yvff compare
BWI76_RS09970 -1.2 -1.7 porin OmpA compare
BWI76_RS12345 -1.2 -1.8 nitrite transporter compare
BWI76_RS16485 -1.2 -2.1 ribonuclease T compare
BWI76_RS17000 -1.2 -2.7 Fe-S cluster assembly scaffold SufA compare
BWI76_RS00760 -1.2 -3.7 cell division protein FtsN compare
BWI76_RS01090 -1.2 -5.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS26075 -1.2 -3.9 DNA adenine methylase compare
BWI76_RS26000 -1.1 -5.5 aspartate aminotransferase family protein compare
BWI76_RS11860 -1.1 -4.9 anthranilate synthase component I compare
BWI76_RS00980 -1.1 -7.0 PLP-dependent threonine dehydratase compare
BWI76_RS11610 -1.1 -2.8 glutamate dehydrogenase compare
BWI76_RS20565 -1.1 -1.6 hypothetical protein compare
BWI76_RS20925 -1.1 -4.4 peptidase M48 compare
BWI76_RS26670 -1.1 -6.9 two-component sensor histidine kinase compare
BWI76_RS18755 -1.1 -1.4 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS15835 -1.1 -1.2 hypothetical protein compare
BWI76_RS01135 -1.1 -3.7 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS16315 -1.1 -1.1 SirA-like protein compare
BWI76_RS26465 -1.1 -6.0 4-amino-4-deoxy-L-arabinose lipid A transferase compare
BWI76_RS01085 -1.1 -5.2 polysaccharide chain length modulation protein compare
BWI76_RS01080 -1.1 -6.5 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS06780 -1.1 -3.9 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS25425 -1.1 -1.8 arginine repressor compare
BWI76_RS23265 -1.0 -2.7 hypothetical protein compare
BWI76_RS10815 -1.0 -3.5 iron permease compare
BWI76_RS16215 -1.0 -4.8 hypothetical protein compare
BWI76_RS20930 -1.0 -2.2 arsenate reductase (glutaredoxin) compare
BWI76_RS25920 -1.0 -2.0 peptidylprolyl isomerase compare
BWI76_RS05140 -1.0 -3.3 Fe3+-hydroxamate ABC transporter permease FhuB conserved
BWI76_RS11965 -1.0 -3.0 orotidine-5'-phosphate decarboxylase compare
BWI76_RS19765 -1.0 -6.1 membrane protein compare
BWI76_RS13730 -1.0 -2.7 hypothetical protein compare
BWI76_RS06465 -1.0 -1.7 IclR family transcriptional regulator compare
BWI76_RS15850 -1.0 -2.2 DUF1317 domain-containing protein compare
BWI76_RS09335 -1.0 -1.3 baseplate assembly protein W compare
BWI76_RS04305 -0.9 -1.0 molecular chaperone DnaJ compare
BWI76_RS16490 -0.9 -2.0 glutaredoxin compare
BWI76_RS11130 -0.9 -3.4 PTS glucose transporter subunit IIBC compare
BWI76_RS08535 -0.9 -1.7 translocation protein TolB compare
BWI76_RS13820 -0.9 -1.3 hypothetical protein compare
BWI76_RS17995 -0.9 -3.9 hypothetical protein compare
BWI76_RS00720 -0.9 -1.2 DNA-binding response regulator compare
BWI76_RS05125 -0.9 -4.6 ferrichrome porin FhuA compare
BWI76_RS27290 -0.9 -4.8 hypothetical protein compare
BWI76_RS07380 -0.9 -1.2 hypothetical protein compare
BWI76_RS04100 -0.9 -3.2 peptide chain release factor 3 compare
BWI76_RS25600 -0.9 -1.1 tRNA-Thr compare
BWI76_RS21310 -0.9 -0.9 DNA repair protein RecO compare
BWI76_RS23830 -0.9 -3.1 hypothetical protein compare
BWI76_RS12340 -0.9 -3.0 molecular chaperone Tir compare
BWI76_RS11275 -0.9 -4.5 sensor protein PhoQ compare
BWI76_RS00840 -0.9 -5.8 acetylornithine deacetylase compare
BWI76_RS11285 -0.9 -1.5 transcriptional regulator compare
BWI76_RS13240 -0.9 -1.3 hypothetical protein compare
BWI76_RS24900 -0.9 -1.7 DeoR family transcriptional regulator compare
BWI76_RS19330 -0.9 -1.1 HAD family hydrolase compare


Specific Phenotypes

For 12 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms