Experiment set12IT022 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and Iron (II) sulfate heptahydrate 0.209 mg/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS26460 -6.0 -6.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26085 -5.4 -3.7 3-dehydroquinate synthase compare
BWI76_RS20965 -5.2 -7.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS04465 -5.0 -7.6 carbamoyl-phosphate synthase small subunit compare
BWI76_RS00400 -4.9 -3.4 glutamine synthetase compare
BWI76_RS20475 -4.8 -7.1 phospholipid-binding lipoprotein MlaA compare
BWI76_RS05015 -4.7 -3.9 transcriptional regulator compare
BWI76_RS23920 -4.6 -7.6 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS25220 -4.4 -5.9 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS09755 -4.4 -10.4 phosphoserine transaminase compare
BWI76_RS25225 -4.3 -11.5 ABC transporter permease compare
BWI76_RS02530 -4.3 -3.0 tRNA dimethylallyltransferase compare
BWI76_RS18140 -4.3 -6.1 zinc ABC transporter permease compare
BWI76_RS25230 -4.3 -9.1 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS05835 -4.2 -4.5 gamma-glutamyl-phosphate reductase compare
BWI76_RS17720 -4.2 -2.0 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS01615 -4.2 -12.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS08385 -4.1 -5.4 citrate (Si)-synthase compare
BWI76_RS01210 -4.1 -3.1 tyrosine recombinase XerC compare
BWI76_RS09635 -3.9 -4.6 amino acid ABC transporter ATP-binding protein compare
BWI76_RS18130 -3.9 -4.1 zinc ABC transporter substrate-binding protein compare
BWI76_RS04160 -3.8 -7.6 phosphoserine phosphatase compare
BWI76_RS04470 -3.8 -10.1 carbamoyl phosphate synthase large subunit compare
BWI76_RS23360 -3.7 -4.8 diaminopimelate decarboxylase compare
BWI76_RS26455 -3.7 -4.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS04255 -3.6 -13.2 threonine synthase compare
BWI76_RS24400 -3.6 -8.8 outer membrane channel protein TolC compare
BWI76_RS20435 -3.5 -2.2 chorismate synthase compare
BWI76_RS21265 -3.5 -14.2 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04250 -3.5 -10.2 homoserine kinase compare
BWI76_RS20895 -3.5 -7.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS18135 -3.5 -7.4 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS05840 -3.4 -7.6 glutamate 5-kinase compare
BWI76_RS25115 -3.4 -11.0 argininosuccinate synthase compare
BWI76_RS18935 -3.4 -9.9 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS25215 -3.4 -10.1 phospholipid-binding protein MlaC compare
BWI76_RS20355 -3.3 -2.8 colicin V production protein compare
BWI76_RS21070 -3.2 -3.3 outer membrane protein assembly factor BamB compare
BWI76_RS00965 -3.2 -2.1 acetolactate synthase 2 small subunit compare
BWI76_RS03010 -3.2 -8.5 ornithine carbamoyltransferase compare
BWI76_RS01610 -3.1 -9.0 phosphoribosylamine--glycine ligase compare
BWI76_RS00855 -3.1 -9.1 argininosuccinate lyase compare
BWI76_RS20650 -3.1 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS15825 -3.0 -2.0 hypothetical protein compare
BWI76_RS00845 -3.0 -11.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS23230 -3.0 -4.1 exodeoxyribonuclease V subunit beta compare
BWI76_RS00850 -3.0 -9.6 acetylglutamate kinase compare
BWI76_RS23240 -3.0 -4.0 exonuclease V subunit gamma compare
BWI76_RS20350 -2.9 -6.4 amidophosphoribosyltransferase compare
BWI76_RS21475 -2.8 -5.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS07070 -2.8 -6.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS07065 -2.8 -9.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS00835 -2.8 -13.1 phosphoenolpyruvate carboxylase compare
BWI76_RS00805 -2.8 -6.9 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS00990 -2.7 -10.6 ketol-acid reductoisomerase compare
BWI76_RS05200 -2.7 -4.1 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS00345 -2.7 -4.8 protein disulfide oxidoreductase DsbA compare
BWI76_RS18930 -2.7 -7.6 histidinol-phosphate transaminase compare
BWI76_RS00975 -2.7 -8.3 dihydroxy-acid dehydratase compare
BWI76_RS04530 -2.7 -2.6 peptidylprolyl isomerase SurA compare
BWI76_RS22805 -2.7 -10.2 GTP diphosphokinase compare
BWI76_RS23220 -2.7 -7.2 amino-acid N-acetyltransferase compare
BWI76_RS19845 -2.6 -6.9 phosphatase compare
BWI76_RS00980 -2.6 -12.4 PLP-dependent threonine dehydratase compare
BWI76_RS21345 -2.6 -3.1 sigma-E factor regulatory protein RseB compare
BWI76_RS18950 -2.5 -7.0 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS26200 -2.5 -8.5 starch synthase compare
BWI76_RS04245 -2.5 -12.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS11845 -2.4 -5.7 tryptophan synthase subunit beta compare
BWI76_RS09640 -2.4 -4.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS17975 -2.3 -5.2 tail-specific protease compare
BWI76_RS04645 -2.3 -6.3 3-dehydroquinase compare
BWI76_RS18920 -2.3 -3.5 ATP phosphoribosyltransferase compare
BWI76_RS17195 -2.3 -3.8 hypothetical protein compare
BWI76_RS23365 -2.3 -6.4 LysR family transcriptional regulator compare
BWI76_RS08495 -2.3 -6.9 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS09760 -2.3 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04240 -2.2 -3.6 thr operon leader peptide compare
BWI76_RS18925 -2.2 -7.1 histidinol dehydrogenase compare
BWI76_RS00720 -2.1 -4.0 DNA-binding response regulator compare
BWI76_RS04675 -2.1 -8.6 3-isopropylmalate dehydrogenase compare
BWI76_RS01330 -2.1 -5.0 twin-arginine translocase subunit TatC compare
BWI76_RS26000 -2.1 -6.9 aspartate aminotransferase family protein compare
BWI76_RS04305 -2.1 -1.7 molecular chaperone DnaJ compare
BWI76_RS05260 -2.1 -3.0 chaperone compare
BWI76_RS04680 -2.1 -12.0 2-isopropylmalate synthase compare
BWI76_RS11965 -2.0 -4.5 orotidine-5'-phosphate decarboxylase compare
BWI76_RS24285 -2.0 -8.6 cystathionine beta-lyase compare
BWI76_RS09530 -2.0 -1.8 hypothetical protein compare
BWI76_RS25645 -2.0 -6.8 shikimate dehydrogenase compare
BWI76_RS04665 -2.0 -14.5 3-isopropylmalate dehydratase small subunit compare
BWI76_RS26570 -2.0 -4.4 anion permease compare
BWI76_RS27310 -1.9 -9.1 glycosyltransferase compare
BWI76_RS04670 -1.9 -9.4 3-isopropylmalate dehydratase large subunit compare
BWI76_RS11840 -1.9 -4.3 tryptophan synthase subunit alpha compare
BWI76_RS25060 -1.9 -3.3 lipoprotein NlpI compare
BWI76_RS06340 -1.9 -1.9 hypothetical protein compare
BWI76_RS02995 -1.8 -7.9 aspartate carbamoyltransferase compare
BWI76_RS21565 -1.8 -1.7 outer membrane protein assembly factor BamE compare
BWI76_RS17190 -1.8 -3.6 TonB system transport protein TonB compare
BWI76_RS01800 -1.8 -4.1 glucose-6-phosphate isomerase compare
BWI76_RS18940 -1.8 -2.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS04685 -1.8 -10.6 putative leucine operon leader peptide compare
BWI76_RS01195 -1.7 -2.4 membrane protein compare
BWI76_RS06775 -1.7 -9.8 multidrug efflux RND transporter permease subunit compare
BWI76_RS06780 -1.7 -4.6 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS01655 -1.7 -8.9 homoserine O-succinyltransferase compare
BWI76_RS11850 -1.7 -8.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS04525 -1.6 -1.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS09655 -1.6 -5.8 leucine-responsive regulatory protein compare
BWI76_RS11855 -1.6 -7.9 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS21350 -1.6 -2.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS01200 -1.6 -1.4 diaminopimelate epimerase compare
BWI76_RS09660 -1.5 -1.5 DNA translocase FtsK compare
BWI76_RS24275 -1.5 -4.8 biopolymer transport protein ExbD compare
BWI76_RS25065 -1.5 -3.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS08500 -1.5 -4.5 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS17980 -1.4 -2.6 RNA chaperone ProQ compare
BWI76_RS18955 -1.4 -3.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS11430 -1.4 -1.5 lipoprotein compare
BWI76_RS08405 -1.4 -2.3 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS20900 -1.4 -1.7 outer membrane protein assembly factor BamC compare
BWI76_RS11860 -1.4 -6.9 anthranilate synthase component I compare
BWI76_RS21165 -1.4 -2.4 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS08525 -1.4 -3.3 colicin transporter compare
BWI76_RS23970 -1.4 -2.1 mechanosensitive ion channel protein MscS compare
BWI76_RS09910 -1.4 -10.2 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS25425 -1.3 -2.3 arginine repressor compare
BWI76_RS00960 -1.3 -5.3 acetolactate synthase 2 catalytic subunit compare
BWI76_RS18065 -1.3 -2.3 DNA polymerase III subunit theta compare
BWI76_RS12670 -1.3 -1.9 DNA polymerase V subunit UmuD compare
BWI76_RS23930 -1.3 -5.5 transcriptional regulator ArgP compare
BWI76_RS03595 -1.3 -1.5 ethanolamine utilization protein EutM compare
BWI76_RS19850 -1.2 -3.1 tRNA-Pro compare
BWI76_RS24280 -1.2 -5.1 biopolymer transporter ExbB compare
BWI76_RS19685 -1.2 -3.7 lysine transporter compare
BWI76_RS20380 -1.2 -1.5 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS27385 -1.2 -6.3 orotate phosphoribosyltransferase compare
BWI76_RS04510 -1.1 -1.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS22645 -1.1 -3.4 RNA polymerase sigma factor RpoS compare
BWI76_RS01110 -1.1 -5.3 TDP-fucosamine acetyltransferase compare
BWI76_RS09970 -1.1 -1.7 porin OmpA compare
BWI76_RS04515 -1.1 -1.8 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS08530 -1.1 -1.6 protein TolA compare
BWI76_RS01095 -1.1 -2.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS01085 -1.1 -5.8 polysaccharide chain length modulation protein compare
BWI76_RS26075 -1.1 -3.5 DNA adenine methylase compare
BWI76_RS22690 -1.1 -2.7 adenylyl-sulfate kinase compare
BWI76_RS00785 -1.0 -4.8 cystathionine gamma-synthase compare
BWI76_RS09650 -1.0 -4.6 hypothetical protein compare
BWI76_RS27430 -1.0 -1.1 (p)ppGpp synthetase compare
BWI76_RS19840 -1.0 -1.4 hypothetical protein compare
BWI76_RS25320 -1.0 -4.8 glutamate synthase compare
BWI76_RS25335 -1.0 -2.1 stringent starvation protein A compare
BWI76_RS00355 -1.0 -2.8 DNA polymerase I compare
BWI76_RS26980 -1.0 -3.6 cold-shock protein compare
BWI76_RS09420 -1.0 -2.2 hypothetical protein compare
BWI76_RS10990 -1.0 -1.8 dihydroorotase compare
BWI76_RS27875 -1.0 -1.1 membrane protein compare
BWI76_RS00240 -1.0 -1.8 FMN-binding protein MioC compare
BWI76_RS27390 -1.0 -3.6 ribonuclease PH compare
BWI76_RS21250 -1.0 -5.3 two-component system response regulator GlrR compare
BWI76_RS01080 -1.0 -5.5 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS21140 -1.0 -1.5 molecular chaperone HscA compare
BWI76_RS25315 -1.0 -5.7 glutamate synthase large subunit compare
BWI76_RS25870 -1.0 -1.8 elongation factor Tu compare
BWI76_RS04100 -1.0 -2.4 peptide chain release factor 3 compare
BWI76_RS00970 -1.0 -2.5 branched chain amino acid aminotransferase compare
BWI76_RS10815 -1.0 -2.4 iron permease compare
BWI76_RS25920 -1.0 -1.9 peptidylprolyl isomerase compare
BWI76_RS21465 -1.0 -4.0 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS20940 -0.9 -2.0 uracil/xanthine transporter compare
BWI76_RS13595 -0.9 -3.2 transcriptional regulator compare
BWI76_RS27680 -0.9 -4.5 TetR family transcriptional regulator compare
BWI76_RS11130 -0.9 -5.0 PTS glucose transporter subunit IIBC compare
BWI76_RS26475 -0.9 -4.7 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS01135 -0.9 -3.5 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS10745 -0.9 -1.1 hypothetical protein compare
BWI76_RS18385 -0.9 -1.3 hypothetical protein compare
BWI76_RS20880 -0.9 -1.8 esterase compare
BWI76_RS19760 -0.9 -3.8 GTP-binding protein compare
BWI76_RS08520 -0.9 -1.3 colicin transporter TolQ compare
BWI76_RS25960 -0.9 -3.2 NUDIX hydrolase compare
BWI76_RS01795 -0.9 -3.1 hypothetical protein compare
BWI76_RS11235 -0.8 -1.1 hypothetical protein compare
BWI76_RS19805 -0.8 -2.9 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS06770 -0.8 -5.4 Hha toxicity attenuator compare
BWI76_RS23020 -0.8 -1.2 cobalamin biosynthesis protein CbiQ compare
BWI76_RS16215 -0.8 -4.1 hypothetical protein compare
BWI76_RS17155 -0.8 -1.5 hypothetical protein compare
BWI76_RS01630 -0.8 -1.1 16S ribosomal RNA compare
BWI76_RS06295 -0.8 -3.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS22860 -0.8 -1.5 SecY-interacting protein compare
BWI76_RS13250 -0.8 -1.1 cytochrome b561 compare
BWI76_RS09470 -0.8 -2.9 putrescine ABC transporter permease compare
BWI76_RS08535 -0.8 -1.3 translocation protein TolB compare
BWI76_RS16980 -0.8 -2.8 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS26405 -0.8 -1.1 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS09730 -0.8 -1.2 pyruvate formate lyase 1-activating protein compare
BWI76_RS21000 -0.8 -3.7 exopolyphosphatase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted across organisms