Experiment set12IT022 for Paraburkholderia graminis OAS925

Compare to:

RCH2_defined_glucose_5mM with Chlorogenic acid 2 mM

200 most important genes:

  gene name fitness t score description  
ABIE53_000830 -6.0 -3.6 preprotein translocase subunit YajC compare
ABIE53_003158 -5.6 -3.0 phosphoserine aminotransferase compare
ABIE53_002546 -5.3 -3.7 cell wall-associated NlpC family hydrolase compare
ABIE53_001277 -5.3 -6.3 glucose/mannose transport system substrate-binding protein compare
ABIE53_003017 -5.1 -7.0 trehalose 6-phosphate phosphatase compare
ABIE53_001279 -5.0 -9.0 glucose/mannose transport system permease protein compare
ABIE53_003043 -4.6 -17.3 RNA polymerase sigma-70 factor (ECF subfamily) compare
ABIE53_002496 -4.6 -11.5 regulator of sigma E protease compare
ABIE53_003434 -4.5 -9.2 heptosyltransferase-2 compare
ABIE53_000423 -4.5 -3.1 DnaK suppressor protein compare
ABIE53_003157 -4.5 -5.4 chorismate mutase/prephenate dehydratase compare
ABIE53_005863 -4.5 -12.0 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_001278 -4.5 -5.3 glucose/mannose transport system permease protein compare
ABIE53_000403 -4.4 -3.1 rod shape-determining protein MreD compare
ABIE53_000885 -4.4 -6.0 biopolymer transport protein TolQ compare
ABIE53_001228 -4.4 -4.2 phosphoadenosine phosphosulfate reductase compare
ABIE53_003160 -4.3 -10.8 hypothetical protein compare
ABIE53_000414 -4.3 -14.4 homoserine O-acetyltransferase compare
ABIE53_001229 -4.3 -4.2 sulfate adenylyltransferase subunit 2 compare
ABIE53_006533 -4.3 -2.7 octopine/nopaline transport system ATP-binding protein compare
ABIE53_004811 -4.1 -7.9 tryptophan synthase alpha chain compare
ABIE53_001276 -4.1 -10.5 glucose-6-phosphate 1-dehydrogenase compare
ABIE53_002739 -4.1 -2.8 outer membrane protein assembly factor BamB compare
ABIE53_001544 -4.1 -2.8 coproporphyrinogen III oxidase compare
ABIE53_003733 -4.1 -2.8 glutamate synthase domain-containing protein 3 compare
ABIE53_003186 -4.0 -7.3 disulfide bond formation protein DsbB compare
ABIE53_004803 -4.0 -4.8 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_003735 -4.0 -2.7 hypothetical protein compare
ABIE53_001230 -4.0 -9.2 sulfate adenylyltransferase subunit 1 compare
ABIE53_001275 -3.9 -2.1 glucose-6-phosphate 1-dehydrogenase compare
ABIE53_000884 -3.9 -3.8 biopolymer transport protein TolR compare
ABIE53_004801 -3.9 -8.3 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_003231 -3.9 -2.4 DNA-directed RNA polymerase subunit omega compare
ABIE53_000798 -3.9 -5.3 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_003517 -3.8 -4.6 phosphogluconate dehydratase compare
ABIE53_004921 -3.8 -4.5 protocatechuate 3,4-dioxygenase beta subunit compare
ABIE53_000667 -3.8 -11.0 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_003305 -3.8 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_001226 -3.8 -5.2 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_000840 -3.7 -4.4 pyrroline-5-carboxylate reductase compare
ABIE53_003588 -3.7 -4.4 glutamate 5-kinase compare
ABIE53_000061 -3.7 -2.6 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_000598 -3.7 -3.6 thiol:disulfide interchange protein DsbA compare
ABIE53_002857 -3.7 -10.4 phosphomethylpyrimidine synthase compare
ABIE53_004804 -3.7 -7.8 3-isopropylmalate dehydrogenase compare
ABIE53_001225 -3.7 -5.0 LysR family cys regulon transcriptional activator compare
ABIE53_001227 -3.7 -2.5 uncharacterized protein (DUF934 family) compare
ABIE53_001273 -3.6 -9.0 glucokinase compare
ABIE53_003531 -3.6 -2.5 Fur family ferric uptake transcriptional regulator compare
ABIE53_005782 -3.6 -2.4 hypothetical protein compare
ABIE53_002077 -3.5 -2.4 phosphoserine phosphatase compare
ABIE53_000768 -3.5 -9.4 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_003306 -3.5 -5.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_004858 -3.5 -5.8 farnesyl diphosphate synthase compare
ABIE53_003734 -3.5 -9.3 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_001588 -3.5 -4.1 triosephosphate isomerase compare
ABIE53_002117 -3.5 -3.4 ATP-dependent Lon protease compare
ABIE53_000153 -3.4 -16.3 O-antigen ligase compare
ABIE53_002740 -3.4 -4.0 putative negative regulator of RcsB-dependent stress response compare
ABIE53_003640 -3.4 -5.7 anthranilate synthase component 1 compare
ABIE53_000880 -3.4 -11.6 tol-pal system protein YbgF compare
ABIE53_002116 -3.4 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_005904 -3.4 -5.6 peroxiredoxin compare
ABIE53_001140 -3.3 -2.3 dTDP-4-dehydrorhamnose reductase compare
ABIE53_001644 -3.3 -4.5 aromatic-amino-acid transaminase compare
ABIE53_004227 -3.3 -6.3 signal transduction histidine kinase compare
ABIE53_003565 -3.3 -4.4 thiol-disulfide isomerase/thioredoxin compare
ABIE53_004817 -3.2 -10.5 O-succinylhomoserine sulfhydrylase compare
ABIE53_001314 -3.2 -9.5 phosphoenolpyruvate carboxylase compare
ABIE53_005596 -3.1 -9.0 DNA-binding IclR family transcriptional regulator compare
ABIE53_000838 -3.1 -10.2 starvation-inducible DNA-binding protein compare
ABIE53_002652 -3.1 -2.1 hypothetical protein compare
ABIE53_002733 -3.1 -2.8 uncharacterized protein YjeT (DUF2065 family) compare
ABIE53_000663 -3.1 -12.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_002450 -3.1 -4.7 cell division protein ZapE compare
ABIE53_003146 -3.0 -6.1 ADP-L-glycero-D-manno-heptose 6-epimerase compare
ABIE53_000666 -3.0 -4.1 preprotein translocase subunit SecB compare
ABIE53_002794 -3.0 -2.1 PAS domain S-box-containing protein compare
ABIE53_000858 -3.0 -11.0 heat-inducible transcriptional repressor compare
ABIE53_001772 -3.0 -1.6 succinylglutamic semialdehyde dehydrogenase compare
ABIE53_004630 -3.0 -1.6 hypothetical protein compare
ABIE53_003159 -2.9 -6.8 phosphoserine aminotransferase compare
ABIE53_000633 -2.9 -2.0 hypothetical protein compare
ABIE53_002004 -2.9 -8.6 anti-sigma factor RsiW compare
ABIE53_000883 -2.9 -1.5 colicin import membrane protein compare
ABIE53_000046 -2.9 -11.2 putative MarR family transcription regulator compare
ABIE53_002494 -2.9 -4.7 outer membrane protein compare
ABIE53_004718 -2.9 -2.4 LysR family glycine cleavage system transcriptional activator compare
ABIE53_003536 -2.8 -4.7 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_006183 -2.8 -3.0 cobalt-precorrin 5A hydrolase compare
ABIE53_003674 -2.8 -5.7 AcrR family transcriptional regulator compare
ABIE53_001280 -2.8 -4.6 multiple sugar transport system ATP-binding protein compare
ABIE53_002762 -2.8 -3.3 enolase compare
ABIE53_000044 -2.8 -18.7 soluble lytic murein transglycosylase compare
ABIE53_000045 -2.7 -8.7 5-formyltetrahydrofolate cyclo-ligase compare
ABIE53_004920 -2.7 -6.1 protocatechuate 3,4-dioxygenase alpha subunit compare
ABIE53_003428 -2.6 -2.5 phosphoglycerate kinase compare
ABIE53_000413 -2.6 -6.1 methionine biosynthesis protein MetW compare
ABIE53_000199 -2.6 -2.7 hypothetical protein compare
ABIE53_002010 -2.5 -3.0 putative phosphate transport protein (TIGR00153 family) compare
ABIE53_003586 -2.5 -7.9 putative (di)nucleoside polyphosphate hydrolase compare
ABIE53_005294 -2.5 -2.0 low affinity Fe/Cu permease compare
ABIE53_000063 -2.5 -1.7 adenosylhomocysteinase compare
ABIE53_003465 -2.5 -8.6 DeoR family glycerol-3-phosphate regulon repressor compare
ABIE53_003525 -2.5 -13.2 LPS-assembly lipoprotein compare
ABIE53_003014 -2.5 -14.3 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_000678 -2.4 -7.5 cytochrome c oxidase subunit 3 compare
ABIE53_003749 -2.4 -2.9 diaminopimelate decarboxylase compare
ABIE53_001232 -2.4 -1.6 sirohydrochlorin cobaltochelatase compare
ABIE53_000383 -2.4 -2.2 DNA invertase Pin-like site-specific DNA recombinase compare
ABIE53_001770 -2.4 -3.7 arginine N-succinyltransferase compare
ABIE53_001163 -2.4 -7.4 FlaA1/EpsC-like NDP-sugar epimerase compare
ABIE53_005752 -2.4 -4.1 DNA-binding PadR family transcriptional regulator compare
ABIE53_001197 -2.3 -2.0 urease subunit beta compare
ABIE53_004325 -2.3 -2.2 hypothetical protein compare
ABIE53_003815 -2.3 -3.4 tRNA-Arg compare
ABIE53_003162 -2.3 -3.8 OOP family OmpA-OmpF porin compare
ABIE53_002788 -2.3 -7.5 IclR family KDG regulon transcriptional repressor compare
ABIE53_002528 -2.3 -2.2 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_000706 -2.3 -3.1 large subunit ribosomal protein L25 compare
ABIE53_003689 -2.3 -7.8 sec-independent protein translocase protein TatB compare
ABIE53_000682 -2.2 -11.0 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_001135 -2.2 -2.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
ABIE53_000650 -2.2 -10.0 thiol-disulfide isomerase/thioredoxin compare
ABIE53_000714 -2.2 -14.6 UPF0042 nucleotide-binding protein compare
ABIE53_002862 -2.2 -9.1 outer membrane protein assembly factor BamC compare
ABIE53_001037 -2.2 -2.2 hypothetical protein compare
ABIE53_000282 -2.2 -8.5 two-component system OmpR family response regulator compare
ABIE53_003261 -2.2 -8.7 undecaprenyl-diphosphatase compare
ABIE53_003015 -2.2 -14.8 ATP-binding cassette subfamily B protein compare
ABIE53_002729 -2.2 -8.3 KUP system potassium uptake protein compare
ABIE53_000614 -2.2 -2.8 rubrerythrin compare
ABIE53_001231 -2.2 -9.9 uroporphyrin-III C-methyltransferase compare
ABIE53_001421 -2.1 -2.5 cytochrome c553 compare
ABIE53_003019 -2.1 -2.3 copper(I)-binding protein compare
ABIE53_001188 -2.1 -6.6 PST family polysaccharide transporter compare
ABIE53_004031 -2.1 -2.4 DNA-binding transcriptional LysR family regulator compare
ABIE53_000674 -2.1 -7.6 cytochrome c oxidase subunit 1 compare
ABIE53_004168 -2.1 -5.8 transcriptional regulator with XRE-family HTH domain compare
ABIE53_003278 -2.1 -10.5 nucleoside-diphosphate-sugar epimerase compare
ABIE53_001160 -2.0 -7.1 GT2 family glycosyltransferase compare
ABIE53_003445 -2.0 -3.3 succinyl-CoA synthetase beta subunit compare
ABIE53_001162 -2.0 -8.6 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
ABIE53_000683 -2.0 -9.9 protoheme IX farnesyltransferase compare
ABIE53_002804 -2.0 -7.0 two-component system nitrogen regulation response regulator GlnG compare
ABIE53_006272 -2.0 -4.6 AcrR family transcriptional regulator compare
ABIE53_003877 -2.0 -9.0 DeoR/GlpR family transcriptional regulator of sugar metabolism compare
ABIE53_000190 -2.0 -2.6 hypothetical protein compare
ABIE53_000805 -2.0 -2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABIE53_005070 -1.9 -8.1 DNA-binding GntR family transcriptional regulator compare
ABIE53_005141 -1.9 -2.1 putative spermidine/putrescine transport system permease protein compare
ABIE53_003287 -1.9 -9.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
ABIE53_005451 -1.9 -3.1 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) compare
ABIE53_005000 -1.9 -1.6 hypothetical protein compare
ABIE53_004866 -1.9 -11.8 RNA polymerase primary sigma factor compare
ABIE53_005529 -1.9 -3.1 putative transcriptional regulator YheO compare
ABIE53_000313 -1.9 -12.8 glutamate--cysteine ligase compare
ABIE53_003148 -1.9 -4.9 UDPglucose 6-dehydrogenase compare
ABIE53_002102 -1.9 -6.7 hypothetical protein compare
ABIE53_000048 -1.9 -4.6 biotin-dependent carboxylase-like uncharacterized protein compare
ABIE53_003541 -1.8 -7.7 RNAse (barnase) inhibitor barstar compare
ABIE53_006008 -1.8 -1.8 two-component system chemotaxis response regulator CheY compare
ABIE53_003688 -1.8 -12.1 sec-independent protein translocase protein TatC compare
ABIE53_002424 -1.8 -8.1 anti-sigma factor RsiW compare
ABIE53_002535 -1.8 -4.4 superfamily II DNA/RNA helicase compare
ABIE53_000402 -1.8 -3.9 penicillin-binding protein 2 compare
ABIE53_002987 -1.8 -8.5 hypothetical protein compare
ABIE53_004648 -1.8 -4.5 squalene synthase HpnD compare
ABIE53_001710 -1.8 -2.7 DNA-binding transcriptional LysR family regulator compare
ABIE53_002940 -1.8 -7.2 UTP--glucose-1-phosphate uridylyltransferase compare
ABIE53_003459 -1.8 -7.3 cytochrome c553 compare
ABIE53_003460 -1.8 -6.2 mono/diheme cytochrome c family protein compare
ABIE53_002100 -1.7 -8.3 two-component system osmolarity sensor histidine kinase EnvZ compare
ABIE53_000680 -1.7 -7.9 surfeit locus 1 family protein compare
ABIE53_001538 -1.7 -7.0 ribonuclease G compare
ABIE53_004274 -1.7 -3.4 3-oxoadipate enol-lactonase compare
ABIE53_006277 -1.7 -1.6 sulfonate transport system permease protein compare
ABIE53_000777 -1.7 -7.3 putative membrane protein compare
ABIE53_003495 -1.6 -2.7 Holliday junction DNA helicase RuvB compare
ABIE53_002674 -1.6 -3.2 RNA polymerase sigma factor (sigma-70 family) compare
ABIE53_003040 -1.6 -7.4 serine protease Do compare
ABIE53_002101 -1.6 -6.2 two-component system phosphate regulon response regulator OmpR compare
ABIE53_005243 -1.6 -0.8 hypothetical protein compare
ABIE53_005545 -1.6 -3.0 trans-feruloyl-CoA hydratase/vanillin synthase compare
ABIE53_005702 -1.6 -4.0 two-component system heavy metal sensor histidine kinase CusS compare
ABIE53_005283 -1.6 -1.8 hypothetical protein compare
ABIE53_005351 -1.6 -2.1 nitrate reductase delta subunit compare
ABIE53_006063 -1.6 -3.7 AmiR/NasT family two-component response regulator compare
ABIE53_001991 -1.6 -4.2 sulfate transport system permease protein compare
ABIE53_004774 -1.6 -4.9 DeoR/GlpR family transcriptional regulator of sugar metabolism compare
ABIE53_000503 -1.6 -1.8 DNA invertase Pin-like site-specific DNA recombinase compare
ABIE53_002104 -1.6 -5.2 phytoene synthase compare
ABIE53_005905 -1.5 -2.4 alkyl hydroperoxide reductase subunit F compare
ABIE53_001007 -1.5 -1.0 hypothetical protein compare
ABIE53_003288 -1.5 -3.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA compare
ABIE53_001829 -1.5 -1.0 N utilization substance protein A compare
ABIE53_003571 -1.5 -1.4 thiol peroxidase compare
ABIE53_000649 -1.5 -2.6 peroxiredoxin compare
ABIE53_003298 -1.5 -4.3 phosphoribosylglycinamide formyltransferase-1 compare
ABIE53_004586 -1.5 -2.1 ribosomal protein S18 acetylase RimI-like enzyme compare


Specific Phenotypes

None in this experiment

For Paraburkholderia graminis OAS925 in stress experiments

For stress Chlorogenic acid across organisms