Experiment set12IT021 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) sulfate heptahydrate 0.209 mg/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS23920 -5.9 -7.0 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS26455 -5.9 -3.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS26460 -5.8 -7.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS20895 -5.4 -7.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04470 -5.4 -11.8 carbamoyl phosphate synthase large subunit compare
BWI76_RS01210 -5.3 -3.6 tyrosine recombinase XerC compare
BWI76_RS25225 -4.9 -10.0 ABC transporter permease compare
BWI76_RS09755 -4.7 -9.5 phosphoserine transaminase compare
BWI76_RS20475 -4.6 -6.7 phospholipid-binding lipoprotein MlaA compare
BWI76_RS25220 -4.6 -4.9 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS25230 -4.5 -6.7 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS04160 -4.5 -9.9 phosphoserine phosphatase compare
BWI76_RS17720 -4.4 -2.1 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS18950 -4.3 -6.3 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS01615 -4.3 -11.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS07065 -4.3 -5.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS23360 -4.1 -4.3 diaminopimelate decarboxylase compare
BWI76_RS04465 -4.0 -6.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04645 -3.9 -6.1 3-dehydroquinase compare
BWI76_RS20350 -3.8 -8.5 amidophosphoribosyltransferase compare
BWI76_RS24400 -3.8 -8.0 outer membrane channel protein TolC compare
BWI76_RS21265 -3.7 -11.2 phosphoribosylformylglycinamidine synthase compare
BWI76_RS18130 -3.7 -4.1 zinc ABC transporter substrate-binding protein compare
BWI76_RS23240 -3.7 -3.5 exonuclease V subunit gamma compare
BWI76_RS07070 -3.6 -7.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS18925 -3.6 -7.7 histidinol dehydrogenase compare
BWI76_RS20435 -3.5 -2.2 chorismate synthase compare
BWI76_RS09640 -3.5 -4.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS20965 -3.5 -5.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS26085 -3.5 -3.3 3-dehydroquinate synthase compare
BWI76_RS26570 -3.4 -4.2 anion permease compare
BWI76_RS01610 -3.4 -7.9 phosphoribosylamine--glycine ligase compare
BWI76_RS02530 -3.3 -3.2 tRNA dimethylallyltransferase compare
BWI76_RS21580 -3.3 -3.2 SsrA-binding protein compare
BWI76_RS18940 -3.3 -7.2 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS05015 -3.3 -4.4 transcriptional regulator compare
BWI76_RS25215 -3.3 -7.7 phospholipid-binding protein MlaC compare
BWI76_RS05835 -3.2 -4.9 gamma-glutamyl-phosphate reductase compare
BWI76_RS18935 -3.2 -10.7 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS00400 -3.2 -3.1 glutamine synthetase compare
BWI76_RS05840 -3.2 -4.9 glutamate 5-kinase compare
BWI76_RS21070 -3.1 -3.2 outer membrane protein assembly factor BamB compare
BWI76_RS20355 -3.1 -6.0 colicin V production protein compare
BWI76_RS00855 -3.1 -9.0 argininosuccinate lyase compare
BWI76_RS00805 -3.1 -5.5 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS04255 -3.0 -10.2 threonine synthase compare
BWI76_RS25115 -3.0 -7.0 argininosuccinate synthase compare
BWI76_RS23220 -3.0 -9.7 amino-acid N-acetyltransferase compare
BWI76_RS09660 -3.0 -2.0 DNA translocase FtsK compare
BWI76_RS18930 -2.9 -8.0 histidinol-phosphate transaminase compare
BWI76_RS00850 -2.9 -10.2 acetylglutamate kinase compare
BWI76_RS09635 -2.9 -4.1 amino acid ABC transporter ATP-binding protein compare
BWI76_RS10990 -2.9 -4.9 dihydroorotase compare
BWI76_RS18955 -2.9 -3.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04250 -2.8 -6.4 homoserine kinase compare
BWI76_RS00975 -2.8 -7.7 dihydroxy-acid dehydratase compare
BWI76_RS19845 -2.7 -6.3 phosphatase compare
BWI76_RS01200 -2.7 -2.6 diaminopimelate epimerase compare
BWI76_RS21310 -2.7 -1.8 DNA repair protein RecO compare
BWI76_RS03010 -2.7 -10.0 ornithine carbamoyltransferase compare
BWI76_RS08385 -2.6 -4.6 citrate (Si)-synthase compare
BWI76_RS11965 -2.6 -4.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS09760 -2.6 -6.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS00990 -2.6 -8.2 ketol-acid reductoisomerase compare
BWI76_RS22690 -2.6 -4.9 adenylyl-sulfate kinase compare
BWI76_RS18135 -2.6 -6.4 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS00835 -2.6 -13.2 phosphoenolpyruvate carboxylase compare
BWI76_RS00845 -2.6 -11.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS23230 -2.5 -3.8 exodeoxyribonuclease V subunit beta compare
BWI76_RS21475 -2.5 -4.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18140 -2.5 -4.2 zinc ABC transporter permease compare
BWI76_RS04530 -2.5 -2.4 peptidylprolyl isomerase SurA compare
BWI76_RS04240 -2.5 -4.2 thr operon leader peptide compare
BWI76_RS08495 -2.5 -5.4 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS04245 -2.4 -12.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS25645 -2.4 -8.5 shikimate dehydrogenase compare
BWI76_RS26200 -2.4 -6.5 starch synthase compare
BWI76_RS20650 -2.3 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS04675 -2.3 -5.7 3-isopropylmalate dehydrogenase compare
BWI76_RS00345 -2.3 -4.4 protein disulfide oxidoreductase DsbA compare
BWI76_RS23365 -2.3 -3.7 LysR family transcriptional regulator compare
BWI76_RS02995 -2.3 -8.0 aspartate carbamoyltransferase compare
BWI76_RS22805 -2.3 -11.0 GTP diphosphokinase compare
BWI76_RS09655 -2.2 -6.9 leucine-responsive regulatory protein compare
BWI76_RS11845 -2.1 -6.0 tryptophan synthase subunit beta compare
BWI76_RS15825 -2.1 -1.7 hypothetical protein compare
BWI76_RS26000 -2.1 -5.5 aspartate aminotransferase family protein compare
BWI76_RS08500 -2.1 -4.8 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS04665 -2.1 -13.4 3-isopropylmalate dehydratase small subunit compare
BWI76_RS04680 -2.1 -10.1 2-isopropylmalate synthase compare
BWI76_RS00980 -2.1 -9.9 PLP-dependent threonine dehydratase compare
BWI76_RS27310 -2.0 -10.0 glycosyltransferase compare
BWI76_RS17975 -2.0 -2.9 tail-specific protease compare
BWI76_RS22755 -2.0 -6.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS18920 -2.0 -4.3 ATP phosphoribosyltransferase compare
BWI76_RS22765 -1.9 -8.6 sulfite reductase subunit alpha compare
BWI76_RS01330 -1.9 -3.6 twin-arginine translocase subunit TatC compare
BWI76_RS27430 -1.9 -2.0 (p)ppGpp synthetase compare
BWI76_RS05260 -1.9 -2.7 chaperone compare
BWI76_RS04670 -1.9 -7.2 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04685 -1.9 -8.8 putative leucine operon leader peptide compare
BWI76_RS23885 -1.8 -2.2 2-octaprenylphenol hydroxylase compare
BWI76_RS22760 -1.8 -5.0 sulfite reductase subunit beta compare
BWI76_RS24285 -1.7 -6.4 cystathionine beta-lyase compare
BWI76_RS09645 -1.7 -1.5 thioredoxin-disulfide reductase compare
BWI76_RS11850 -1.7 -8.6 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS27390 -1.6 -5.5 ribonuclease PH compare
BWI76_RS00785 -1.6 -6.4 cystathionine gamma-synthase compare
BWI76_RS00965 -1.6 -1.5 acetolactate synthase 2 small subunit compare
BWI76_RS02410 -1.6 -1.5 EF-P beta-lysylation protein EpmB compare
BWI76_RS11855 -1.6 -5.3 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS23265 -1.5 -3.0 hypothetical protein compare
BWI76_RS16635 -1.5 -4.2 carbonate dehydratase compare
BWI76_RS25070 -1.5 -2.0 hypothetical protein compare
BWI76_RS11840 -1.5 -4.4 tryptophan synthase subunit alpha compare
BWI76_RS25425 -1.5 -2.5 arginine repressor compare
BWI76_RS09910 -1.5 -11.5 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS11860 -1.5 -6.6 anthranilate synthase component I compare
BWI76_RS17195 -1.5 -3.2 hypothetical protein compare
BWI76_RS21165 -1.5 -2.4 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS24280 -1.4 -5.3 biopolymer transporter ExbB compare
BWI76_RS25320 -1.4 -5.6 glutamate synthase compare
BWI76_RS24275 -1.4 -2.8 biopolymer transport protein ExbD compare
BWI76_RS25065 -1.4 -2.6 polyribonucleotide nucleotidyltransferase compare
BWI76_RS23930 -1.4 -7.0 transcriptional regulator ArgP compare
BWI76_RS21000 -1.4 -4.0 exopolyphosphatase compare
BWI76_RS01800 -1.4 -2.9 glucose-6-phosphate isomerase compare
BWI76_RS21465 -1.4 -4.2 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS08530 -1.4 -2.3 protein TolA compare
BWI76_RS09650 -1.4 -5.0 hypothetical protein compare
BWI76_RS26620 -1.3 -1.5 Fe-S biogenesis protein NfuA compare
BWI76_RS01655 -1.3 -7.2 homoserine O-succinyltransferase compare
BWI76_RS19805 -1.3 -3.7 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS12090 -1.3 -1.9 HNH endonuclease compare
BWI76_RS19685 -1.3 -5.2 lysine transporter compare
BWI76_RS25060 -1.3 -2.4 lipoprotein NlpI compare
BWI76_RS00355 -1.3 -1.8 DNA polymerase I compare
BWI76_RS17980 -1.2 -3.2 RNA chaperone ProQ compare
BWI76_RS04100 -1.2 -2.9 peptide chain release factor 3 compare
BWI76_RS11435 -1.2 -2.1 hypothetical protein compare
BWI76_RS01795 -1.2 -2.4 hypothetical protein compare
BWI76_RS21350 -1.2 -1.5 anti-RNA polymerase sigma factor SigE compare
BWI76_RS25335 -1.2 -2.2 stringent starvation protein A compare
BWI76_RS25315 -1.1 -6.8 glutamate synthase large subunit compare
BWI76_RS27385 -1.1 -2.9 orotate phosphoribosyltransferase compare
BWI76_RS18165 -1.1 -1.1 NUDIX pyrophosphatase compare
BWI76_RS26075 -1.1 -3.3 DNA adenine methylase compare
BWI76_RS21675 -1.1 -1.5 hypothetical protein compare
BWI76_RS02735 -1.1 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS01275 -1.1 -3.6 LysR family transcriptional regulator compare
BWI76_RS16980 -1.0 -2.9 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS07730 -1.0 -1.5 iron-enterobactin transporter membrane protein compare
BWI76_RS21565 -1.0 -1.1 outer membrane protein assembly factor BamE compare
BWI76_RS21450 -1.0 -1.7 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS16975 -1.0 -4.2 cysteine desufuration protein SufE compare
BWI76_RS15835 -1.0 -1.4 hypothetical protein compare
BWI76_RS01135 -1.0 -4.5 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS08535 -1.0 -1.3 translocation protein TolB compare
BWI76_RS00940 -1.0 -4.5 transcriptional regulator HdfR compare
BWI76_RS06475 -1.0 -1.3 protoheme IX farnesyltransferase compare
BWI76_RS19850 -1.0 -2.5 tRNA-Pro compare
BWI76_RS19330 -1.0 -1.2 HAD family hydrolase compare
BWI76_RS08605 -0.9 -1.7 phosphoglyceromutase compare
BWI76_RS00960 -0.9 -3.3 acetolactate synthase 2 catalytic subunit compare
BWI76_RS06770 -0.9 -5.7 Hha toxicity attenuator compare
BWI76_RS18430 -0.9 -2.3 hypothetical protein compare
BWI76_RS17400 -0.9 -1.2 transporter compare
BWI76_RS18065 -0.9 -1.9 DNA polymerase III subunit theta compare
BWI76_RS18770 -0.9 -1.3 DNA gyrase inhibitor compare
BWI76_RS21075 -0.9 -1.0 membrane protein compare
BWI76_RS20635 -0.9 -2.3 sulfate transporter CysZ compare
BWI76_RS26475 -0.9 -3.8 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS11285 -0.8 -1.5 transcriptional regulator compare
BWI76_RS16035 -0.8 -2.2 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS16470 -0.8 -1.5 transcriptional repressor NemR compare
BWI76_RS19700 -0.8 -1.2 deoxyribonuclease IV compare
BWI76_RS08520 -0.8 -1.1 colicin transporter TolQ compare
BWI76_RS01115 -0.8 -2.5 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS01325 -0.8 -1.4 twin-arginine translocase subunit TatB compare
BWI76_RS12950 -0.8 -3.7 acriflavin resistance protein AcrA compare
BWI76_RS01565 -0.8 -1.5 NADH pyrophosphatase compare
BWI76_RS19840 -0.8 -1.2 hypothetical protein compare
BWI76_RS00390 -0.8 -2.0 two-component system sensor histidine kinase NtrB compare
BWI76_RS17155 -0.8 -1.4 hypothetical protein compare
BWI76_RS01080 -0.8 -3.4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS09970 -0.8 -1.4 porin OmpA compare
BWI76_RS02990 -0.8 -2.4 aspartate carbamoyltransferase regulatory subunit compare
BWI76_RS08650 -0.8 -1.5 molybdate ABC transporter permease compare
BWI76_RS01995 -0.8 -1.1 AraC family transcriptional regulator compare
BWI76_RS15920 -0.8 -1.4 hypothetical protein compare
BWI76_RS00970 -0.8 -2.2 branched chain amino acid aminotransferase compare
BWI76_RS06775 -0.8 -4.9 multidrug efflux RND transporter permease subunit compare
BWI76_RS20440 -0.8 -1.4 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS26480 -0.8 -3.4 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS16995 -0.8 -3.9 Fe-S cluster assembly protein SufB compare
BWI76_RS24900 -0.8 -1.2 DeoR family transcriptional regulator compare
BWI76_RS10480 -0.8 -5.0 amino acid ABC transporter substrate-binding protein compare
BWI76_RS27875 -0.8 -0.9 membrane protein compare
BWI76_RS24600 -0.8 -2.5 dihydroxyacetone kinase compare
BWI76_RS13250 -0.8 -1.1 cytochrome b561 compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms