Experiment set12IT019 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x

200 most important genes:

  gene name fitness t score description  
BWI76_RS23920 -5.1 -6.1 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS00400 -4.9 -3.4 glutamine synthetase compare
BWI76_RS00965 -4.9 -2.1 acetolactate synthase 2 small subunit compare
BWI76_RS25230 -4.8 -10.8 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS23360 -4.8 -5.7 diaminopimelate decarboxylase compare
BWI76_RS04465 -4.5 -4.4 carbamoyl-phosphate synthase small subunit compare
BWI76_RS25225 -4.5 -6.3 ABC transporter permease compare
BWI76_RS25215 -4.4 -5.6 phospholipid-binding protein MlaC compare
BWI76_RS17720 -4.3 -1.8 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS07070 -4.3 -7.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS24400 -4.2 -7.5 outer membrane channel protein TolC compare
BWI76_RS18140 -4.0 -4.3 zinc ABC transporter permease compare
BWI76_RS20895 -4.0 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS26570 -3.9 -5.3 anion permease compare
BWI76_RS18950 -3.9 -6.9 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS09755 -3.8 -6.9 phosphoserine transaminase compare
BWI76_RS26085 -3.8 -3.4 3-dehydroquinate synthase compare
BWI76_RS23230 -3.8 -2.6 exodeoxyribonuclease V subunit beta compare
BWI76_RS04470 -3.8 -9.4 carbamoyl phosphate synthase large subunit compare
BWI76_RS25220 -3.7 -5.6 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS01615 -3.7 -12.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS10990 -3.7 -5.4 dihydroorotase compare
BWI76_RS04160 -3.6 -5.6 phosphoserine phosphatase compare
BWI76_RS20435 -3.6 -2.1 chorismate synthase compare
BWI76_RS21070 -3.6 -2.3 outer membrane protein assembly factor BamB compare
BWI76_RS20350 -3.5 -7.6 amidophosphoribosyltransferase compare
BWI76_RS07065 -3.4 -9.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20475 -3.4 -7.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS18130 -3.3 -5.7 zinc ABC transporter substrate-binding protein compare
BWI76_RS01610 -3.3 -6.6 phosphoribosylamine--glycine ligase compare
BWI76_RS18135 -3.3 -6.7 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS23365 -3.2 -9.0 LysR family transcriptional regulator compare
BWI76_RS08385 -3.2 -4.3 citrate (Si)-synthase compare
BWI76_RS21265 -3.2 -16.8 phosphoribosylformylglycinamidine synthase compare
BWI76_RS22755 -3.2 -9.0 phosphoadenosine phosphosulfate reductase compare
BWI76_RS27310 -3.1 -10.3 glycosyltransferase compare
BWI76_RS20650 -3.0 -3.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS01330 -3.0 -2.9 twin-arginine translocase subunit TatC compare
BWI76_RS05835 -3.0 -5.2 gamma-glutamyl-phosphate reductase compare
BWI76_RS25115 -2.9 -10.7 argininosuccinate synthase compare
BWI76_RS09660 -2.9 -2.0 DNA translocase FtsK compare
BWI76_RS19845 -2.9 -6.6 phosphatase compare
BWI76_RS00855 -2.9 -9.8 argininosuccinate lyase compare
BWI76_RS20965 -2.8 -5.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS04645 -2.8 -7.6 3-dehydroquinase compare
BWI76_RS00805 -2.8 -4.4 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS03010 -2.8 -7.0 ornithine carbamoyltransferase compare
BWI76_RS04255 -2.7 -11.3 threonine synthase compare
BWI76_RS18940 -2.7 -4.8 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS23240 -2.7 -4.5 exonuclease V subunit gamma compare
BWI76_RS04530 -2.7 -2.6 peptidylprolyl isomerase SurA compare
BWI76_RS00975 -2.7 -8.7 dihydroxy-acid dehydratase compare
BWI76_RS23220 -2.7 -8.8 amino-acid N-acetyltransferase compare
BWI76_RS18925 -2.6 -9.3 histidinol dehydrogenase compare
BWI76_RS09760 -2.5 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS05260 -2.5 -3.0 chaperone compare
BWI76_RS00850 -2.5 -8.8 acetylglutamate kinase compare
BWI76_RS04250 -2.5 -9.9 homoserine kinase compare
BWI76_RS00345 -2.5 -5.2 protein disulfide oxidoreductase DsbA compare
BWI76_RS00990 -2.5 -6.7 ketol-acid reductoisomerase compare
BWI76_RS00845 -2.5 -10.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS20355 -2.4 -6.4 colicin V production protein compare
BWI76_RS26200 -2.4 -6.4 starch synthase compare
BWI76_RS27430 -2.4 -2.2 (p)ppGpp synthetase compare
BWI76_RS18930 -2.4 -5.5 histidinol-phosphate transaminase compare
BWI76_RS18935 -2.3 -9.1 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS18955 -2.3 -7.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS21475 -2.3 -6.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS23265 -2.3 -3.1 hypothetical protein compare
BWI76_RS05015 -2.3 -3.5 transcriptional regulator compare
BWI76_RS04245 -2.3 -13.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS05840 -2.2 -5.6 glutamate 5-kinase compare
BWI76_RS19805 -2.2 -3.4 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS11845 -2.2 -5.4 tryptophan synthase subunit beta compare
BWI76_RS22690 -2.1 -2.9 adenylyl-sulfate kinase compare
BWI76_RS04675 -2.1 -5.8 3-isopropylmalate dehydrogenase compare
BWI76_RS00835 -2.1 -10.8 phosphoenolpyruvate carboxylase compare
BWI76_RS11840 -2.1 -3.4 tryptophan synthase subunit alpha compare
BWI76_RS00980 -2.1 -10.9 PLP-dependent threonine dehydratase compare
BWI76_RS15825 -2.1 -1.6 hypothetical protein compare
BWI76_RS22765 -2.1 -7.7 sulfite reductase subunit alpha compare
BWI76_RS23885 -2.0 -1.7 2-octaprenylphenol hydroxylase compare
BWI76_RS04670 -2.0 -7.4 3-isopropylmalate dehydratase large subunit compare
BWI76_RS09655 -2.0 -6.7 leucine-responsive regulatory protein compare
BWI76_RS04665 -2.0 -14.9 3-isopropylmalate dehydratase small subunit compare
BWI76_RS05135 -1.9 -4.8 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS06765 -1.9 -3.5 transcriptional regulator compare
BWI76_RS07730 -1.9 -2.1 iron-enterobactin transporter membrane protein compare
BWI76_RS02735 -1.9 -6.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS22760 -1.9 -5.4 sulfite reductase subunit beta compare
BWI76_RS09640 -1.8 -3.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS08495 -1.8 -6.2 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS02995 -1.8 -7.2 aspartate carbamoyltransferase compare
BWI76_RS11965 -1.8 -3.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS04680 -1.8 -12.1 2-isopropylmalate synthase compare
BWI76_RS06775 -1.8 -8.1 multidrug efflux RND transporter permease subunit compare
BWI76_RS14390 -1.7 -1.8 hypothetical protein compare
BWI76_RS17190 -1.7 -3.6 TonB system transport protein TonB compare
BWI76_RS00240 -1.7 -3.2 FMN-binding protein MioC compare
BWI76_RS04305 -1.6 -1.4 molecular chaperone DnaJ compare
BWI76_RS23480 -1.6 -7.9 EAL domain-containing protein compare
BWI76_RS06780 -1.6 -4.4 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS11860 -1.6 -7.1 anthranilate synthase component I compare
BWI76_RS06770 -1.6 -8.2 Hha toxicity attenuator compare
BWI76_RS22805 -1.6 -6.2 GTP diphosphokinase compare
BWI76_RS16490 -1.6 -2.6 glutaredoxin compare
BWI76_RS17980 -1.5 -5.0 RNA chaperone ProQ compare
BWI76_RS21350 -1.5 -2.4 anti-RNA polymerase sigma factor SigE compare
BWI76_RS18920 -1.5 -2.5 ATP phosphoribosyltransferase compare
BWI76_RS15835 -1.5 -1.7 hypothetical protein compare
BWI76_RS04685 -1.5 -5.9 putative leucine operon leader peptide compare
BWI76_RS24285 -1.5 -7.8 cystathionine beta-lyase compare
BWI76_RS26000 -1.5 -5.9 aspartate aminotransferase family protein compare
BWI76_RS02530 -1.5 -2.1 tRNA dimethylallyltransferase compare
BWI76_RS25645 -1.4 -6.7 shikimate dehydrogenase compare
BWI76_RS07740 -1.4 -2.2 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS19850 -1.4 -2.9 tRNA-Pro compare
BWI76_RS08500 -1.4 -3.6 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS11855 -1.4 -5.8 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS05140 -1.4 -5.7 Fe3+-hydroxamate ABC transporter permease FhuB conserved
BWI76_RS06910 -1.4 -1.8 transcriptional regulator compare
BWI76_RS04240 -1.4 -2.5 thr operon leader peptide compare
BWI76_RS01210 -1.4 -1.4 tyrosine recombinase XerC compare
BWI76_RS14320 -1.4 -2.9 hypothetical protein compare
BWI76_RS11435 -1.4 -1.9 hypothetical protein compare
BWI76_RS09635 -1.4 -1.9 amino acid ABC transporter ATP-binding protein compare
BWI76_RS16995 -1.4 -6.5 Fe-S cluster assembly protein SufB compare
BWI76_RS11850 -1.3 -5.5 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS12070 -1.3 -1.3 hypothetical protein compare
BWI76_RS03045 -1.3 -1.5 hypothetical protein compare
BWI76_RS17975 -1.3 -3.3 tail-specific protease compare
BWI76_RS24930 -1.3 -5.3 osmotically-inducible protein OsmY compare
BWI76_RS21465 -1.3 -4.6 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS16975 -1.3 -4.6 cysteine desufuration protein SufE compare
BWI76_RS20155 -1.3 -1.3 NADH-quinone oxidoreductase subunit I compare
BWI76_RS16980 -1.3 -5.2 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS01655 -1.3 -5.1 homoserine O-succinyltransferase compare
BWI76_RS24275 -1.3 -2.2 biopolymer transport protein ExbD compare
BWI76_RS10745 -1.3 -1.4 hypothetical protein compare
BWI76_RS23930 -1.3 -3.4 transcriptional regulator ArgP compare
BWI76_RS26480 -1.3 -6.0 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS27290 -1.2 -5.0 hypothetical protein compare
BWI76_RS11300 -1.2 -1.3 cupin compare
BWI76_RS27305 -1.2 -5.5 glycosyl transferase compare
BWI76_RS27680 -1.2 -6.1 TetR family transcriptional regulator compare
BWI76_RS11610 -1.2 -1.8 glutamate dehydrogenase compare
BWI76_RS24900 -1.2 -2.0 DeoR family transcriptional regulator compare
BWI76_RS08525 -1.2 -2.9 colicin transporter compare
BWI76_RS18385 -1.2 -1.5 hypothetical protein compare
BWI76_RS18065 -1.2 -2.1 DNA polymerase III subunit theta compare
BWI76_RS01325 -1.2 -1.2 twin-arginine translocase subunit TatB compare
BWI76_RS00720 -1.1 -2.0 DNA-binding response regulator compare
BWI76_RS26075 -1.1 -2.6 DNA adenine methylase compare
BWI76_RS11255 -1.1 -1.8 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS09650 -1.1 -3.4 hypothetical protein compare
BWI76_RS25600 -1.1 -1.2 tRNA-Thr compare
BWI76_RS05125 -1.1 -5.7 ferrichrome porin FhuA compare
BWI76_RS27385 -1.1 -4.4 orotate phosphoribosyltransferase compare
BWI76_RS01800 -1.1 -4.4 glucose-6-phosphate isomerase compare
BWI76_RS20640 -1.1 -3.7 cysteine synthase A compare
BWI76_RS09910 -1.1 -7.9 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS09970 -1.1 -1.6 porin OmpA compare
BWI76_RS02410 -1.1 -1.3 EF-P beta-lysylation protein EpmB compare
BWI76_RS16990 -1.0 -3.8 ABC transporter ATP-binding protein compare
BWI76_RS21345 -1.0 -1.7 sigma-E factor regulatory protein RseB compare
BWI76_RS25335 -1.0 -3.2 stringent starvation protein A compare
BWI76_RS21075 -1.0 -1.6 membrane protein compare
BWI76_RS17565 -1.0 -1.7 hypothetical protein compare
BWI76_RS21580 -1.0 -1.2 SsrA-binding protein compare
BWI76_RS07705 -1.0 -2.9 enterochelin esterase compare
BWI76_RS24280 -1.0 -4.6 biopolymer transporter ExbB compare
BWI76_RS26665 -1.0 -3.0 DNA-binding response regulator compare
BWI76_RS11835 -1.0 -1.9 putative regulatory protein MarR compare
BWI76_RS10825 -1.0 -3.0 deferrochelatase/peroxidase EfeB compare
BWI76_RS25320 -1.0 -4.5 glutamate synthase compare
BWI76_RS01275 -1.0 -4.9 LysR family transcriptional regulator compare
BWI76_RS25425 -1.0 -1.6 arginine repressor compare
BWI76_RS23485 -1.0 -5.0 hypothetical protein compare
BWI76_RS11275 -1.0 -3.6 sensor protein PhoQ compare
BWI76_RS16515 -1.0 -1.6 LysR family transcriptional regulator compare
BWI76_RS17000 -0.9 -2.6 Fe-S cluster assembly scaffold SufA compare
BWI76_RS00940 -0.9 -5.5 transcriptional regulator HdfR compare
BWI76_RS20380 -0.9 -1.2 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS27390 -0.9 -3.1 ribonuclease PH compare
BWI76_RS17195 -0.9 -2.2 hypothetical protein compare
BWI76_RS06485 -0.9 -2.5 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS12090 -0.9 -1.7 HNH endonuclease compare
BWI76_RS21000 -0.9 -3.1 exopolyphosphatase compare
BWI76_RS21780 -0.9 -2.4 S-(hydroxymethyl)glutathione synthase compare
BWI76_RS04100 -0.9 -3.1 peptide chain release factor 3 compare
BWI76_RS00960 -0.9 -5.2 acetolactate synthase 2 catalytic subunit compare
BWI76_RS06240 -0.9 -2.4 branched-chain amino acid transport system 2 carrier protein BrnQ compare
BWI76_RS25065 -0.9 -2.7 polyribonucleotide nucleotidyltransferase compare
BWI76_RS20205 -0.9 -4.2 aminotransferase AlaT compare
BWI76_RS19765 -0.9 -4.6 membrane protein compare
BWI76_RS01080 -0.9 -5.4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS01200 -0.9 -1.3 diaminopimelate epimerase compare
BWI76_RS09255 -0.9 -1.6 hypothetical protein compare
BWI76_RS26475 -0.9 -4.4 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS17155 -0.9 -1.7 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms