Experiment set12IT017 for Shewanella oneidensis MR-1

Compare to:

Survival in PBS at 22C, experiment1, 13 day

Group: survival
Media: LB
Culturing: MR1_ML3b, Bioserve FPA, Anaerobic, at 30 (C)
By: Michael Dougherty on 6-Dec-17
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 8 genes in this experiment

SEED Subsystems

Subsystem #Specific
Ammonia assimilation 1
Cobalamin synthesis 1
Coenzyme B12 biosynthesis 1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
Hydrogenases 1
Membrane-bound Ni, Fe-hydrogenase 1
NiFe hydrogenase maturation 1
Type IV pilus 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-glutamate biosynthesis I 2 2 2
L-glutamine degradation I 1 1 1
L-glutamine degradation II 1 1 1
ammonia assimilation cycle III 3 3 2
5-hydroxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
2-methyladeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
5-methoxy-6-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
adeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I 3 3 1
5-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
benzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
5-methoxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
L-glutamate and L-glutamine biosynthesis 7 6 2
L-asparagine biosynthesis III (tRNA-dependent) 4 1 1
glutaminyl-tRNAgln biosynthesis via transamidation 4 1 1
NiFe(CO)(CN)2 cofactor biosynthesis 10 6 2
superpathway of adenosylcobalamin salvage from cobinamide I 8 8 1
L-citrulline biosynthesis 8 7 1
superpathway of adenosylcobalamin salvage from cobinamide II 9 8 1
superpathway of L-citrulline metabolism 12 9 1
adenosylcobalamin biosynthesis II (aerobic) 33 19 1
adenosylcobalamin biosynthesis I (anaerobic) 36 18 1