Experiment set12IT016 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x

200 most important genes:

  gene name fitness t score description  
BWI76_RS23920 -5.1 -9.3 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS10990 -4.9 -4.8 dihydroorotase compare
BWI76_RS09645 -4.8 -2.1 thioredoxin-disulfide reductase compare
BWI76_RS17720 -4.5 -2.0 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS20350 -4.4 -7.1 amidophosphoribosyltransferase compare
BWI76_RS09755 -4.4 -9.7 phosphoserine transaminase compare
BWI76_RS04470 -4.2 -11.9 carbamoyl phosphate synthase large subunit compare
BWI76_RS20355 -4.2 -3.2 colicin V production protein compare
BWI76_RS04160 -4.1 -5.6 phosphoserine phosphatase compare
BWI76_RS23240 -4.0 -3.9 exonuclease V subunit gamma compare
BWI76_RS21265 -3.8 -15.9 phosphoribosylformylglycinamidine synthase compare
BWI76_RS20435 -3.7 -2.2 chorismate synthase compare
BWI76_RS00400 -3.6 -3.5 glutamine synthetase compare
BWI76_RS04465 -3.6 -8.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS01610 -3.6 -8.5 phosphoribosylamine--glycine ligase compare
BWI76_RS01615 -3.6 -10.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS23230 -3.6 -3.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS00855 -3.4 -10.2 argininosuccinate lyase compare
BWI76_RS21475 -3.4 -8.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18920 -3.3 -2.4 ATP phosphoribosyltransferase compare
BWI76_RS03010 -3.3 -9.1 ornithine carbamoyltransferase compare
BWI76_RS08385 -3.2 -6.0 citrate (Si)-synthase compare
BWI76_RS11965 -3.2 -5.7 orotidine-5'-phosphate decarboxylase compare
BWI76_RS05840 -3.2 -9.1 glutamate 5-kinase compare
BWI76_RS04250 -3.2 -7.8 homoserine kinase compare
BWI76_RS20965 -3.2 -7.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS05835 -3.2 -5.6 gamma-glutamyl-phosphate reductase compare
BWI76_RS01210 -3.1 -3.3 tyrosine recombinase XerC compare
BWI76_RS23365 -3.1 -7.3 LysR family transcriptional regulator compare
BWI76_RS00850 -3.1 -12.0 acetylglutamate kinase compare
BWI76_RS25115 -3.1 -10.6 argininosuccinate synthase compare
BWI76_RS09660 -3.1 -2.1 DNA translocase FtsK compare
BWI76_RS18935 -3.0 -12.2 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04645 -3.0 -6.9 3-dehydroquinase compare
BWI76_RS04255 -3.0 -9.3 threonine synthase compare
BWI76_RS00990 -3.0 -9.2 ketol-acid reductoisomerase compare
BWI76_RS22765 -2.9 -12.9 sulfite reductase subunit alpha compare
BWI76_RS07070 -2.9 -5.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS00835 -2.8 -12.4 phosphoenolpyruvate carboxylase compare
BWI76_RS09910 -2.8 -15.6 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS00845 -2.8 -10.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS26085 -2.8 -2.5 3-dehydroquinate synthase compare
BWI76_RS22690 -2.8 -4.6 adenylyl-sulfate kinase compare
BWI76_RS22760 -2.8 -9.7 sulfite reductase subunit beta compare
BWI76_RS07065 -2.8 -11.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS00975 -2.7 -9.3 dihydroxy-acid dehydratase compare
BWI76_RS23360 -2.7 -4.1 diaminopimelate decarboxylase compare
BWI76_RS23220 -2.7 -11.6 amino-acid N-acetyltransferase compare
BWI76_RS04245 -2.7 -15.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS20895 -2.6 -6.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00980 -2.6 -10.3 PLP-dependent threonine dehydratase compare
BWI76_RS09760 -2.6 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS11840 -2.6 -4.7 tryptophan synthase subunit alpha compare
BWI76_RS00805 -2.6 -6.9 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS20650 -2.5 -3.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS05015 -2.5 -3.6 transcriptional regulator compare
BWI76_RS22755 -2.5 -5.3 phosphoadenosine phosphosulfate reductase compare
BWI76_RS18940 -2.5 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS27385 -2.4 -9.2 orotate phosphoribosyltransferase compare
BWI76_RS18930 -2.4 -6.3 histidinol-phosphate transaminase compare
BWI76_RS18950 -2.4 -6.7 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS02735 -2.4 -6.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS04665 -2.3 -16.2 3-isopropylmalate dehydratase small subunit compare
BWI76_RS26570 -2.3 -4.2 anion permease compare
BWI76_RS04680 -2.2 -12.2 2-isopropylmalate synthase compare
BWI76_RS02995 -2.1 -7.3 aspartate carbamoyltransferase compare
BWI76_RS18925 -2.1 -5.2 histidinol dehydrogenase compare
BWI76_RS21465 -2.1 -4.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS04670 -2.0 -10.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS18955 -2.0 -7.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04685 -2.0 -10.4 putative leucine operon leader peptide compare
BWI76_RS25645 -1.8 -8.5 shikimate dehydrogenase compare
BWI76_RS02530 -1.8 -2.8 tRNA dimethylallyltransferase compare
BWI76_RS05200 -1.8 -3.7 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS04240 -1.8 -3.4 thr operon leader peptide compare
BWI76_RS21140 -1.8 -3.1 molecular chaperone HscA compare
BWI76_RS11850 -1.7 -9.6 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS00390 -1.7 -5.2 two-component system sensor histidine kinase NtrB compare
BWI76_RS24285 -1.7 -6.6 cystathionine beta-lyase compare
BWI76_RS15835 -1.7 -1.6 hypothetical protein compare
BWI76_RS27390 -1.7 -4.1 ribonuclease PH compare
BWI76_RS22805 -1.6 -8.7 GTP diphosphokinase compare
BWI76_RS06340 -1.6 -1.8 hypothetical protein compare
BWI76_RS25335 -1.6 -4.0 stringent starvation protein A compare
BWI76_RS11845 -1.6 -3.3 tryptophan synthase subunit beta compare
BWI76_RS04530 -1.6 -2.1 peptidylprolyl isomerase SurA compare
BWI76_RS08520 -1.6 -2.1 colicin transporter TolQ compare
BWI76_RS04675 -1.6 -7.6 3-isopropylmalate dehydrogenase compare
BWI76_RS00965 -1.5 -1.6 acetolactate synthase 2 small subunit compare
BWI76_RS17975 -1.5 -3.9 tail-specific protease compare
BWI76_RS26000 -1.5 -5.2 aspartate aminotransferase family protein compare
BWI76_RS11860 -1.4 -5.6 anthranilate synthase component I compare
BWI76_RS23265 -1.4 -3.7 hypothetical protein compare
BWI76_RS08530 -1.3 -2.7 protein TolA compare
BWI76_RS01655 -1.3 -5.2 homoserine O-succinyltransferase compare
BWI76_RS00785 -1.3 -4.9 cystathionine gamma-synthase compare
BWI76_RS18065 -1.3 -2.4 DNA polymerase III subunit theta compare
BWI76_RS01185 -1.2 -2.7 adenylate cyclase compare
BWI76_RS25315 -1.2 -8.3 glutamate synthase large subunit compare
BWI76_RS26055 -1.2 -5.6 siroheme synthase compare
BWI76_RS01800 -1.2 -4.0 glucose-6-phosphate isomerase compare
BWI76_RS01275 -1.2 -4.5 LysR family transcriptional regulator compare
BWI76_RS27430 -1.2 -1.7 (p)ppGpp synthetase compare
BWI76_RS15660 -1.2 -1.0 hypothetical protein compare
BWI76_RS21580 -1.2 -1.7 SsrA-binding protein compare
BWI76_RS25320 -1.2 -6.0 glutamate synthase compare
BWI76_RS00385 -1.2 -7.6 nitrogen assimilation regulatory protein compare
BWI76_RS09655 -1.2 -3.4 leucine-responsive regulatory protein compare
BWI76_RS04305 -1.1 -1.2 molecular chaperone DnaJ compare
BWI76_RS11855 -1.1 -6.1 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS12550 -1.1 -2.8 hypothetical protein compare
BWI76_RS21480 -1.1 -5.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS06910 -1.1 -1.7 transcriptional regulator compare
BWI76_RS00345 -1.0 -3.3 protein disulfide oxidoreductase DsbA compare
BWI76_RS20970 -1.0 -1.8 phosphoribosylglycinamide formyltransferase compare
BWI76_RS20380 -1.0 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS23480 -1.0 -5.2 EAL domain-containing protein compare
BWI76_RS04510 -1.0 -2.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS12465 -1.0 -1.2 phage shock protein D compare
BWI76_RS14050 -1.0 -2.6 AP endonuclease, family 2 compare
BWI76_RS17530 -1.0 -2.5 hypothetical protein compare
BWI76_RS23915 -0.9 -1.4 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS25065 -0.9 -3.0 polyribonucleotide nucleotidyltransferase compare
BWI76_RS20440 -0.9 -2.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS02725 -0.9 -1.1 HxlR family transcriptional regulator compare
BWI76_RS26200 -0.9 -5.0 starch synthase compare
BWI76_RS25425 -0.9 -1.6 arginine repressor compare
BWI76_RS04955 -0.9 -2.1 hypoxanthine phosphoribosyltransferase compare
BWI76_RS04270 -0.9 -2.8 transaldolase compare
BWI76_RS17195 -0.9 -2.3 hypothetical protein compare
BWI76_RS08765 -0.9 -2.8 8-amino-7-oxononanoate synthase compare
BWI76_RS15260 -0.9 -1.7 hypothetical protein compare
BWI76_RS00970 -0.8 -2.2 branched chain amino acid aminotransferase compare
BWI76_RS08665 -0.8 -3.5 6-phosphogluconolactonase compare
BWI76_RS00590 -0.8 -1.5 hypothetical protein compare
BWI76_RS10035 -0.8 -1.7 hypothetical protein compare
BWI76_RS09650 -0.8 -3.6 hypothetical protein compare
BWI76_RS24400 -0.8 -4.2 outer membrane channel protein TolC compare
BWI76_RS15825 -0.8 -0.9 hypothetical protein compare
BWI76_RS08395 -0.8 -1.8 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS21450 -0.8 -1.6 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS20050 -0.8 -1.4 hypothetical protein compare
BWI76_RS18130 -0.8 -1.6 zinc ABC transporter substrate-binding protein compare
BWI76_RS14415 -0.8 -1.8 transcriptional regulator, TetR family protein compare
BWI76_RS08330 -0.8 -1.5 hypothetical protein compare
BWI76_RS00960 -0.8 -3.5 acetolactate synthase 2 catalytic subunit compare
BWI76_RS17945 -0.8 -1.6 hypothetical protein compare
BWI76_RS06525 -0.8 -4.0 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS00985 -0.8 -3.1 transcriptional regulator IlvY compare
BWI76_RS13610 -0.8 -3.4 sugar transporter compare
BWI76_RS06745 -0.8 -2.3 N-acetyltransferase GCN5 compare
BWI76_RS09710 -0.8 -2.3 transketolase compare
BWI76_RS02680 -0.7 -1.2 EamA family transporter compare
BWI76_RS10950 -0.7 -1.3 MFS transporter compare
BWI76_RS24925 -0.7 -2.1 DnaA initiator-associating protein DiaA compare
BWI76_RS24885 -0.7 -1.5 PTS galactitol transporter subunit IIB compare
BWI76_RS12090 -0.7 -2.1 HNH endonuclease compare
BWI76_RS17525 -0.7 -1.5 XshC-Cox1-family protein compare
BWI76_RS10500 -0.7 -1.7 flavoprotein monooxygenase compare
BWI76_RS27735 -0.7 -2.8 hypothetical protein compare
BWI76_RS19840 -0.7 -1.1 hypothetical protein compare
BWI76_RS22695 -0.7 -3.3 sulfate adenylyltransferase compare
BWI76_RS24120 -0.7 -2.3 YggW family oxidoreductase compare
BWI76_RS08525 -0.7 -1.8 colicin transporter compare
BWI76_RS15830 -0.7 -3.2 hypothetical protein compare
BWI76_RS18870 -0.7 -1.2 protein NifZ compare
BWI76_RS13445 -0.7 -1.6 alpha/beta hydrolase compare
BWI76_RS26460 -0.7 -3.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS21345 -0.7 -1.9 sigma-E factor regulatory protein RseB compare
BWI76_RS21070 -0.7 -1.1 outer membrane protein assembly factor BamB compare
BWI76_RS10060 -0.7 -1.2 acylphosphatase compare
BWI76_RS25505 -0.7 -3.6 RNase E specificity factor CsrD compare
BWI76_RS01890 -0.7 -2.4 transcriptional regulator Zur compare
BWI76_RS00180 -0.7 -1.4 F0F1 ATP synthase subunit epsilon compare
BWI76_RS13980 -0.7 -1.3 hypothetical protein compare
BWI76_RS17980 -0.7 -2.4 RNA chaperone ProQ compare
BWI76_RS19685 -0.7 -2.6 lysine transporter compare
BWI76_RS15000 -0.7 -2.1 amino acid ABC transporter ATP-binding protein compare
BWI76_RS14170 -0.7 -1.3 hypothetical protein compare
BWI76_RS09610 -0.7 -1.2 ATP-dependent Clp protease adaptor ClpS compare
BWI76_RS20640 -0.6 -2.1 cysteine synthase A compare
BWI76_RS14065 -0.6 -1.2 hypothetical protein compare
BWI76_RS22700 -0.6 -3.0 sulfate adenylyltransferase subunit 2 compare
BWI76_RS02855 -0.6 -1.9 cytochrome B562 compare
BWI76_RS14570 -0.6 -2.3 hypothetical protein compare
BWI76_RS26455 -0.6 -1.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS11235 -0.6 -0.9 hypothetical protein compare
BWI76_RS20390 -0.6 -1.7 erythronate-4-phosphate dehydrogenase compare
BWI76_RS22085 -0.6 -2.0 L-valine transporter subunit YgaH compare
BWI76_RS01350 -0.6 -0.7 NAD(P)H-flavin reductase compare
BWI76_RS21100 -0.6 -1.8 nucleoside-diphosphate kinase compare
BWI76_RS23510 -0.6 -2.6 transcriptional regulator compare
BWI76_RS06230 -0.6 -1.9 DNA-binding response regulator compare
BWI76_RS14320 -0.6 -1.3 hypothetical protein compare
BWI76_RS18770 -0.6 -0.9 DNA gyrase inhibitor compare
BWI76_RS11440 -0.6 -0.9 hypothetical protein compare
BWI76_RS10575 -0.6 -0.9 polar amino acid ABC transporter permease compare
BWI76_RS25600 -0.6 -0.8 tRNA-Thr compare
BWI76_RS11600 -0.6 -2.1 selenide, water dikinase SelD compare
BWI76_RS16000 -0.6 -0.9 multidrug transporter subunit MdtI compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted across organisms