Experiment set12IT002 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Lacidipine 0.4 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -6.0 -5.8 chromosomal replication initiator protein DnaA compare
BBR_RS10625 -5.1 -3.5 FHA domain-containing protein compare
BBR_RS13035 -4.6 -3.2 ABC transporter permease compare
BBR_RS13040 -4.5 -3.1 CHAP domain-containing protein compare
BBR_RS19450 -4.4 -3.0 GTPase ObgE compare
BBR_RS15455 -4.3 -3.0 orotate phosphoribosyltransferase compare
BBR_RS12545 -3.7 -3.6 DUF4012 domain-containing protein compare
BBR_RS15070 -3.4 -4.6 endolytic transglycosylase MltG compare
BBR_RS15090 -3.2 -2.2 type II 3-dehydroquinate dehydratase compare
BBR_RS20430 -3.1 -5.2 hypothetical protein compare
BBR_RS13635 -3.1 -8.7 carbamoyl-phosphate synthase large subunit compare
BBR_RS17640 -3.1 -3.0 DNA-directed RNA polymerase subunit omega compare
BBR_RS13630 -3.0 -6.0 carbamoyl-phosphate synthase small subunit compare
BBR_RS14210 -2.9 -2.7 hypothetical protein compare
BBR_RS15080 -2.9 -3.9 chorismate synthase compare
BBR_RS15440 -2.8 -4.6 orotidine-5'-phosphate decarboxylase compare
BBR_RS15520 -2.8 -4.2 shikimate 5-dehydrogenase compare
BBR_RS19540 -2.7 -2.6 homoserine dehydrogenase compare
BBR_RS15425 -2.6 -3.0 aspartate carbamoyltransferase compare
BBR_RS15435 -2.4 -3.7 dihydroorotase compare
BBR_RS15055 -2.4 -3.2 hypothetical protein compare
BBR_RS13300 -2.3 -2.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS19190 -2.2 -8.4 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS18690 -2.2 -7.6 diacylglycerol kinase compare
BBR_RS19375 -2.1 -2.0 acyl-CoA carboxylase subunit beta compare
BBR_RS13910 -2.1 -1.9 arginine repressor compare
BBR_RS18725 -2.1 -3.9 ribonuclease HI compare
BBR_RS13030 -2.1 -2.9 cell division ATP-binding protein FtsE compare
BBR_RS15650 -2.0 -1.9 Holliday junction resolvase compare
BBR_RS14070 -2.0 -6.6 threonine synthase compare
BBR_RS19070 -2.0 -1.8 50S ribosomal protein L33 compare
BBR_RS16750 -1.9 -3.4 ParA family protein compare
BBR_RS17135 -1.9 -2.1 RluA family pseudouridine synthase compare
BBR_RS14370 -1.9 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS13805 -1.9 -1.7 hypothetical protein compare
BBR_RS14265 -1.9 -5.5 Solute-binding protein of ABC transporter system for metals compare
BBR_RS15085 -1.9 -1.8 3-dehydroquinate synthase compare
BBR_RS20465 -1.8 -7.2 chromosome partitioning protein compare
BBR_RS16675 -1.8 -4.2 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS12590 -1.8 -2.7 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS11470 -1.7 -2.0 6-phosphogluconolactonase compare
BBR_RS20460 -1.7 -4.9 chromosome partitioning protein ParB compare
BBR_RS19120 -1.7 -7.2 helicase compare
BBR_RS20435 -1.7 -1.7 CCA tRNA nucleotidyltransferase compare
BBR_RS16965 -1.7 -2.3 ATP-dependent DNA helicase compare
BBR_RS18565 -1.7 -1.9 CHAP domain-containing protein compare
BBR_RS13450 -1.6 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS12905 -1.6 -3.4 galactose-1-phosphate uridylyltransferase compare
BBR_RS14260 -1.6 -1.4 ABC transporter ATP-binding protein compare
BBR_RS14240 -1.6 -5.5 1,4-alpha-glucan branching protein GlgB compare
BBR_RS18795 -1.6 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS16430 -1.5 -2.9 nucleotide pyrophosphatase compare
BBR_RS19165 -1.5 -2.4 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS10445 -1.5 -11.7 HlyC/CorC family transporter compare
BBR_RS12235 -1.5 -1.9 hypothetical protein compare
BBR_RS16635 -1.5 -2.4 ABC transporter ATP-binding protein compare
BBR_RS15050 -1.4 -2.2 DUF948 domain-containing protein compare
BBR_RS11185 -1.4 -2.6 type I DNA topoisomerase compare
BBR_RS21170 -1.4 -7.7 membrane protein insertion efficiency factor YidD compare
BBR_RS13770 -1.3 -2.0 DNA repair protein RecO compare
BBR_RS13640 -1.3 -4.7 orotidine-5'-phosphate decarboxylase compare
BBR_RS11770 -1.3 -3.4 chorismate mutase compare
BBR_RS12900 -1.3 -2.6 DeoR/GlpR transcriptional regulator compare
BBR_RS10620 -1.3 -2.8 phosphoprotein phosphatase compare
BBR_RS13370 -1.2 -2.2 phosphoribosylamine--glycine ligase compare
BBR_RS19170 -1.2 -8.6 DNA-binding response regulator compare
BBR_RS19800 -1.2 -10.1 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS18735 -1.1 -6.1 hypothetical protein compare
BBR_RS19815 -1.1 -9.1 ABC transporter permease compare
BBR_RS19160 -1.1 -1.5 phosphate ABC transporter permease subunit PstC compare
BBR_RS10755 -1.1 -4.1 adenylosuccinate synthase compare
BBR_RS19325 -1.1 -2.6 hypothetical protein compare
BBR_RS13455 -1.1 -2.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS10940 -1.1 -6.7 DedA family protein compare
BBR_RS14625 -1.1 -4.3 pyrroline-5-carboxylate reductase compare
BBR_RS16670 -1.1 -2.1 hypothetical protein compare
BBR_RS20455 -1.1 -4.5 thioredoxin-disulfide reductase compare
BBR_RS16245 -1.0 -2.3 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS11510 -1.0 -2.1 signal recognition particle-docking protein FtsY compare
BBR_RS15750 -1.0 -1.3 hypothetical protein compare
BBR_RS14080 -1.0 -1.4 hypothetical protein compare
BBR_RS12310 -1.0 -1.6 signal recognition particle protein compare
BBR_RS16170 -1.0 -2.0 hypothetical protein compare
BBR_RS19820 -1.0 -7.6 ATP-binding protein of ABC transporter system compare
BBR_RS20705 -1.0 -1.6 hypothetical protein compare
BBR_RS10900 -1.0 -1.7 molecular chaperone DnaK compare
BBR_RS16655 -1.0 -3.8 tyrosine recombinase XerC compare
BBR_RS14540 -1.0 -2.4 Na+/H+ antiporter NhaA compare
BBR_RS12355 -0.9 -2.3 ribonuclease III compare
BBR_RS11205 -0.9 -3.0 HPr family phosphocarrier protein compare
BBR_RS20750 -0.9 -1.8 GntR family transcriptional regulator compare
BBR_RS14610 -0.9 -1.9 DNA-binding response regulator compare
BBR_RS11175 -0.9 -6.2 penicillin-binding protein compare
BBR_RS12305 -0.9 -4.1 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS14715 -0.9 -1.2 XRE family transcriptional regulator compare
BBR_RS19535 -0.9 -6.6 homoserine kinase compare
BBR_RS18035 -0.9 -2.1 oligoribonuclease compare
BBR_RS15915 -0.8 -0.7 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS20480 -0.8 -0.9 membrane protein compare
BBR_RS11640 -0.8 -1.6 hypothetical protein compare
BBR_RS21015 -0.8 -0.8 hypothetical protein compare
BBR_RS16020 -0.8 -1.4 hypothetical protein compare
BBR_RS16640 -0.8 -1.3 ABC transporter permease compare
BBR_RS11970 -0.8 -1.3 Phage transcriptional regulator compare
BBR_RS12610 -0.8 -2.8 capsular polysaccharide biosynthesis protein compare
BBR_RS16685 -0.8 -1.4 alcohol dehydrogenase compare
BBR_RS13215 -0.8 -1.5 hypothetical protein compare
BBR_RS15655 -0.8 -2.5 Holliday junction branch migration protein RuvA compare
BBR_RS20955 -0.8 -0.9 hypothetical protein compare
BBR_RS20440 -0.8 -3.3 NUDIX hydrolase compare
BBR_RS17290 -0.8 -3.9 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS19155 -0.7 -3.5 phosphate ABC transporter, permease protein PstA compare
BBR_RS19760 -0.7 -1.0 polysaccharide ABC transporter ATPase compare
BBR_RS12975 -0.7 -5.1 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS11675 -0.7 -0.6 hypothetical protein compare
BBR_RS20720 -0.7 -3.0 DUF4422 domain-containing protein compare
BBR_RS10570 -0.7 -3.1 hypothetical protein compare
BBR_RS12300 -0.7 -2.4 30S ribosomal protein S16 compare
BBR_RS10580 -0.7 -1.2 septation inhibitor protein compare
BBR_RS12460 -0.7 -3.6 LacI family DNA-binding transcriptional regulator compare
BBR_RS19125 -0.7 -2.7 hypothetical protein compare
BBR_RS16755 -0.7 -2.7 site-specific tyrosine recombinase XerD compare
BBR_RS12500 -0.7 -0.7 sugar ABC transporter permease compare
BBR_RS15330 -0.7 -1.9 hypothetical protein compare
BBR_RS20930 -0.7 -1.7 hypothetical protein compare
BBR_RS16845 -0.7 -1.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS12605 -0.7 -2.1 glycosyltransferase family 2 protein compare
BBR_RS10265 -0.7 -4.2 DNA replication and repair protein RecF compare
BBR_RS18220 -0.6 -4.2 glycosyltransferase family 2 protein compare
BBR_RS15660 -0.6 -2.0 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS17455 -0.6 -3.4 DNA-binding response regulator compare
BBR_RS17155 -0.6 -0.7 cell division protein SepF compare
BBR_RS14520 -0.6 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BBR_RS12980 -0.6 -4.3 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS18180 -0.6 -3.5 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS20915 -0.6 -1.7 hypothetical protein compare
BBR_RS13255 -0.6 -2.3 hypothetical protein compare
BBR_RS15130 -0.6 -0.6 metal-sulfur cluster assembly factor compare
BBR_RS18175 -0.6 -0.8 GTP cyclohydrolase I FolE compare
BBR_RS16135 -0.6 -1.2 peptide deformylase compare
BBR_RS19520 -0.6 -2.6 DUF1778 domain-containing protein compare
BBR_RS19435 -0.6 -1.1 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS17040 -0.6 -2.4 hypothetical protein compare
BBR_RS14495 -0.6 -1.3 trigger factor compare
BBR_RS12380 -0.6 -2.2 DUF3039 domain-containing protein compare
BBR_RS13830 -0.6 -0.6 DUF4191 domain-containing protein compare
BBR_RS16255 -0.6 -0.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS10735 -0.5 -4.0 zinc metalloprotease HtpX compare
BBR_RS13375 -0.5 -2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS20475 -0.5 -4.6 KH domain-containing protein compare
BBR_RS12365 -0.5 -2.5 DUF177 domain-containing protein compare
BBR_RS20980 -0.5 -0.8 hypothetical protein compare
BBR_RS14085 -0.5 -1.1 nicotinate-nucleotide adenylyltransferase compare
BBR_RS20725 -0.5 -2.4 hypothetical protein compare
BBR_RS19645 -0.5 -2.6 RNA degradosome polyphosphate kinase compare
BBR_RS11595 -0.5 -1.8 50S ribosomal protein L9 compare
BBR_RS10915 -0.5 -2.5 MerR family DNA-binding transcriptional regulator compare
BBR_RS16625 -0.5 -1.3 DUF3710 domain-containing protein compare
BBR_RS13305 -0.5 -1.8 transcriptional repressor compare
BBR_RS12655 -0.5 -3.1 glycosyltransferase family 2 protein compare
BBR_RS14615 -0.5 -2.8 histidine kinase compare
BBR_RS14880 -0.5 -2.4 ATP-dependent helicase compare
BBR_RS15345 -0.5 -1.5 transporter compare
BBR_RS19055 -0.5 -1.0 ferredoxin family protein compare
BBR_RS17460 -0.5 -2.7 TPM domain-containing protein compare
BBR_RS18745 -0.5 -0.9 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS13380 -0.5 -2.8 amidophosphoribosyltransferase compare
BBR_RS14915 -0.5 -1.8 ABC transporter ATP-binding protein compare
BBR_RS15230 -0.5 -1.5 elongation factor 4 compare
BBR_RS13125 -0.5 -0.8 ABC transporter permease compare
BBR_RS16520 -0.5 -2.6 ribosome-associated translation inhibitor RaiA compare
BBR_RS15935 -0.5 -1.8 hypothetical protein compare
BBR_RS19445 -0.5 -3.9 glutamate 5-kinase compare
BBR_RS19755 -0.5 -3.0 glycosyl transferase compare
BBR_RS16165 -0.5 -2.2 M23 family peptidase compare
BBR_RS12985 -0.4 -2.3 MFS transporter compare
BBR_RS14045 -0.4 -1.9 GntR family transcriptional regulator compare
BBR_RS14140 -0.4 -0.9 Ppx/GppA family phosphatase compare
BBR_RS15870 -0.4 -1.3 hypothetical protein compare
BBR_RS15350 -0.4 -1.1 plasmid pRiA4b ORF-3 family protein compare
BBR_RS13420 -0.4 -1.1 DUF4230 domain-containing protein compare
BBR_RS10990 -0.4 -2.1 recombination protein RecR compare
BBR_RS11210 -0.4 -3.1 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS17480 -0.4 -2.1 hypothetical protein compare
BBR_RS13075 -0.4 -2.3 23S rRNA pseudouridylate synthase compare
BBR_RS15805 -0.4 -1.8 prolipoprotein diacylglyceryl transferase compare
BBR_RS17190 -0.4 -1.6 transcriptional regulator compare
BBR_RS20450 -0.4 -3.3 murein biosynthesis integral membrane protein MurJ compare
BBR_RS18575 -0.4 -1.5 hypothetical protein compare
BBR_RS14985 -0.4 -1.0 ATP-dependent DNA helicase PcrA compare
BBR_RS16035 -0.4 -1.2 hypothetical protein compare
BBR_RS13515 -0.4 -1.8 putative sulfate exporter family transporter compare
BBR_RS15885 -0.4 -2.1 histidine kinase compare
BBR_RS15180 -0.4 -2.0 long-chain fatty acid--CoA ligase compare
BBR_RS16490 -0.4 -1.4 polyprenyl synthase compare
BBR_RS19795 -0.4 -3.4 hypothetical protein compare
BBR_RS14000 -0.4 -1.4 hypothetical protein compare
BBR_RS17005 -0.4 -1.9 methyltransferase domain-containing protein compare
BBR_RS19655 -0.4 -2.8 hypothetical protein compare
BBR_RS16605 -0.4 -2.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Lacidipine across organisms